BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0212.5
(129 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86953 similar to GP|18252504|gb|AAL66290.1 adenosine 5'-phosph... 100 2e-22
TC87909 similar to GP|15809802|gb|AAL06829.1 AT5g62650/MRG21_7 {... 27 2.2
TC93813 similar to GP|11935197|gb|AAG42014.1 unknown protein {Ar... 26 3.8
TC86279 homologue to PIR|T07093|T07093 acetyl-CoA carboxylase (E... 23 4.0
TC85326 similar to GP|5738542|emb|CAB53034.1 photosystem I subun... 25 8.4
TC84703 weakly similar to GP|20268746|gb|AAM14076.1 unknown prot... 25 8.4
BG449113 similar to PIR|S55881|S558 CCHH finger protein 1 - Arab... 25 8.4
TC85329 homologue to GP|5738542|emb|CAB53034.1 photosystem I sub... 25 8.4
BG582633 weakly similar to GP|20259149|gb| unknown protein {Arab... 25 8.4
>TC86953 similar to GP|18252504|gb|AAL66290.1 adenosine 5'-phosphosulfate
reductase {Glycine max}, partial (89%)
Length = 1334
Score = 100 bits (249), Expect = 2e-22
Identities = 68/144 (47%), Positives = 77/144 (53%), Gaps = 28/144 (19%)
Frame = +3
Query: 1 CCRVRKVRLLRRELKGVTT*IIGQ*KDQSPGT---------------------NLVKWNL 39
CCRVRKVR LRR LKG+ I GQ KDQSPGT +LVKWN
Sbjct: 639 CCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEVPVVQVDPVFEGLDGGNGSLVKWNP 818
Query: 40 VAISKAIIYGISLGP*MCL*IH*IRKDTF------PLEALVLREQHEREGNRWWEDAKAK 93
VA K L M + ++ + + P VL QHEREG WWEDAKAK
Sbjct: 819 VANVKGNDIWTFLRT-MDVPVNALHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAK 995
Query: 94 DCGLHKGNVKQDVGAQL-NGNGAA 116
+CGLHKGN+KQD AQ NGNG A
Sbjct: 996 ECGLHKGNLKQDDAAQNGNGNGVA 1067
>TC87909 similar to GP|15809802|gb|AAL06829.1 AT5g62650/MRG21_7 {Arabidopsis
thaliana}, partial (58%)
Length = 1763
Score = 26.9 bits (58), Expect = 2.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 83 GNRWWEDAKAKDCG 96
G RWWE+ + ++CG
Sbjct: 247 GERWWEEERERNCG 206
>TC93813 similar to GP|11935197|gb|AAG42014.1 unknown protein {Arabidopsis
thaliana}, partial (70%)
Length = 664
Score = 26.2 bits (56), Expect = 3.8
Identities = 12/42 (28%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Frame = +1
Query: 86 WWEDAKAKDCGLHKGNVKQDVGAQLNGNGAAMQVHC-HCRIH 126
WW CG+H G V+Q + + + + C HC +H
Sbjct: 511 WWM------CGIHTGQVRQSLQKKYHLKNSPCNACCVHCCLH 618
>TC86279 homologue to PIR|T07093|T07093 acetyl-CoA carboxylase (EC 6.4.1.2)
biotin carboxylase chain precursor - soybean, partial
(86%)
Length = 2189
Score = 23.5 bits (49), Expect(2) = 4.0
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -2
Query: 30 PGTNLVKWNLVAISKAIIYGIS 51
PG N+V W LVA ++ +GI+
Sbjct: 610 PGCNIVHWRLVAAART--FGIT 551
Score = 20.8 bits (42), Expect(2) = 4.0
Identities = 6/21 (28%), Positives = 11/21 (51%)
Frame = -3
Query: 79 HEREGNRWWEDAKAKDCGLHK 99
HE +WW + K+ +H+
Sbjct: 492 HEEHLYQWWNKQQHKESPIHE 430
>TC85326 similar to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
precursor {Arabidopsis thaliana}, partial (85%)
Length = 826
Score = 25.0 bits (53), Expect = 8.4
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = -3
Query: 82 EGNRWWEDAKAKDCGLHKGNVKQDVGAQLNGNGAAM 117
EGN W + G+ KG VK D+ G AAM
Sbjct: 152 EGN*WSGEEPQSPLGVTKGLVKLDLSWLAIGEAAAM 45
>TC84703 weakly similar to GP|20268746|gb|AAM14076.1 unknown protein
{Arabidopsis thaliana}, partial (10%)
Length = 770
Score = 25.0 bits (53), Expect = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 77 EQHEREGNRWWEDAKAK 93
E H + NRWW D + K
Sbjct: 188 EAHSEKPNRWWIDVRIK 238
>BG449113 similar to PIR|S55881|S558 CCHH finger protein 1 - Arabidopsis
thaliana, partial (15%)
Length = 632
Score = 25.0 bits (53), Expect = 8.4
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = +1
Query: 117 MQVHCHCRIHLK 128
+Q CHCRIH+K
Sbjct: 4 LQWKCHCRIHMK 39
>TC85329 homologue to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
precursor {Arabidopsis thaliana}, partial (79%)
Length = 1068
Score = 25.0 bits (53), Expect = 8.4
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = -3
Query: 82 EGNRWWEDAKAKDCGLHKGNVKQDVGAQLNGNGAAM 117
EGN W + G+ KG VK D+ G AAM
Sbjct: 121 EGN*WSGEEPQSPLGVTKGLVKLDLSWLAIGEAAAM 14
>BG582633 weakly similar to GP|20259149|gb| unknown protein {Arabidopsis
thaliana}, partial (27%)
Length = 787
Score = 25.0 bits (53), Expect = 8.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 81 REGNRWWEDAKAKDCGLHKG 100
+E RWW DA GL G
Sbjct: 316 KEKGRWWRDASGSGGGLEDG 257
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.344 0.153 0.534
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,224,633
Number of Sequences: 36976
Number of extensions: 47596
Number of successful extensions: 544
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of query: 129
length of database: 9,014,727
effective HSP length: 85
effective length of query: 44
effective length of database: 5,871,767
effective search space: 258357748
effective search space used: 258357748
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0212.5