BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.5
(1428 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 272 8e-73
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 188 1e-47
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 170 4e-42
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 166 6e-41
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 161 2e-39
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 118 2e-36
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 135 1e-31
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 132 1e-30
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 91 3e-30
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B... 125 9e-29
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 120 5e-27
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 75 9e-27
BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element pol... 110 3e-24
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 108 1e-23
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 98 3e-20
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 93 6e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 91 3e-18
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 88 2e-17
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 85 2e-16
AW773859 84 5e-16
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 272 bits (695), Expect = 8e-73
Identities = 145/244 (59%), Positives = 184/244 (74%), Gaps = 1/244 (0%)
Frame = +2
Query: 1055 QVCLLQKSLYGLKQASRQWYTTLCKALHTLGFSPSSADHTLYIKKGTTGSFTALLLYVDD 1114
+VC LQKS+YGLKQASRQWY+ L ++L + G+ SS+D +L+ K + SFT LL+YVDD
Sbjct: 17 KVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDS-SFTTLLVYVDD 193
Query: 1115 VLLTGNDLHEIQLVKESLHAQFRIKDMGEAKFFLGLEIARSKAGIVLNQRKYALELLSDS 1174
++L GND+ EIQ VK L +F+IKD+G ++FLGLE+ARSK GI+LNQRKY LELL DS
Sbjct: 194 IVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDS 373
Query: 1175 GLLGGKPTTTPMDSSQKFGLSTDTPL-SDISSYRRLIGKLLYLTTTRPDIAYVVNQLSQF 1233
G L K T TP D S K ++D+PL +D + YRRLIGKL+YLTTTRPDI++ V QLSQF
Sbjct: 374 GNLAVKSTLTPYDISLKLH-NSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQF 550
Query: 1234 LSAPTNVHEAAAHRVLRYIKGNPGCGLFYPADSSTTLTAFSDSDWAGCLDTRKSITGYCM 1293
+S P VH AA RVL+Y+K P GLFY A S+ L++F+DSDWA C TRKS+TGY +
Sbjct: 551 VSKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWV 730
Query: 1294 FLGS 1297
FLGS
Sbjct: 731 FLGS 742
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 188 bits (477), Expect = 1e-47
Identities = 93/191 (48%), Positives = 124/191 (64%)
Frame = +1
Query: 930 WRKAMDQEIEALERNHTWILVDKPHDKTPIGCKWVYRIKYKQDGTLDRYKARLVVKGYTQ 989
W +AM E +AL N TW LV P K IGCKWVYR+K DG+++++KARLV KG++Q
Sbjct: 97 WLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQ 276
Query: 990 LEGIDFIDTFSPVAKMTTLRVLLALASSYNWFLHQLDVDNAFLHAQLDEEIYMSLPQGLH 1049
G D+ +TFSPV K T+R++L +A +Y W + Q+D++NAFL+ L EE+YMS PQG
Sbjct: 277 TLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFE 456
Query: 1050 TEKPNQVCLLQKSLYGLKQASRQWYTTLCKALHTLGFSPSSADHTLYIKKGTTGSFTALL 1109
+ VC L KSLYGLKQA R WY L A GF+ S D +L I G+ L
Sbjct: 457 AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLI-YNQNGACIYLX 633
Query: 1110 LYVDDVLLTGN 1120
+YVDD+L+TG+
Sbjct: 634 IYVDDILITGS 666
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 170 bits (430), Expect = 4e-42
Identities = 81/194 (41%), Positives = 124/194 (63%), Gaps = 1/194 (0%)
Frame = -1
Query: 904 AYHTFVMNITAVVEPKRYSEAVKHDSWRKAMDQEIEALERNHTWILVDKPHDKTPIGCKW 963
A+ F++N+ P+ Y EA++ W++++ E A+ +N TW + P K + +W
Sbjct: 600 AHCAFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRW 421
Query: 964 VYRIKYKQDGTLDRYKARLVVKGYTQLEGIDFIDTFSPVAKMTTLRVLLALASSYNWFLH 1023
++ IKYK DG+++R K RLV +G+T G D+I+TF+PVAK+ T+R++L+LA + W L
Sbjct: 420 IFTIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLW 241
Query: 1024 QLDVDNAFLHAQLDEEIYMSLPQGL-HTEKPNQVCLLQKSLYGLKQASRQWYTTLCKALH 1082
Q+DV NAFL +L++E+YM P GL H K V L+K++YGLKQ+ R WY L L+
Sbjct: 240 QMDVKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLN 61
Query: 1083 TLGFSPSSADHTLY 1096
GF S DHTL+
Sbjct: 60 GRGFRKSELDHTLF 19
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 166 bits (420), Expect = 6e-41
Identities = 88/258 (34%), Positives = 149/258 (57%), Gaps = 8/258 (3%)
Frame = +3
Query: 912 ITAVVEPKRYSEAVKHDSWRKAMDQEIEALERNHTWILVDKPHDKTPIGCKWVYRIKYKQ 971
+T +P + EAVK + WR +M+ E+EA ERN+TW L D IG KW+++ K +
Sbjct: 24 LTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNE 203
Query: 972 DGTLDRYKARLVVKGYTQLEGIDFIDTFSPVAKMTTLRVLLALASSYNWFLHQLDVDNAF 1031
+G +++YKARLV KGY+Q G+D+ + F+PVA+ T+R+++ALA+ Q+ D
Sbjct: 204 NGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA-------QIKRDGVC 362
Query: 1032 L------HAQLDEEIYMSLPQGLHTEKPNQVC--LLQKSLYGLKQASRQWYTTLCKALHT 1083
+ H+ ++ + L H +V ++++LYGLKQA R WY+ +
Sbjct: 363 IS*M*KAHSCMEN*MRKFLLIN-HRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTK 539
Query: 1084 LGFSPSSADHTLYIKKGTTGSFTALLLYVDDVLLTGNDLHEIQLVKESLHAQFRIKDMGE 1143
GF +HTL++K G + LYVDD++ GND + + K+S+ +F + D+G+
Sbjct: 540 EGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGK 719
Query: 1144 AKFFLGLEIARSKAGIVL 1161
+FLG+E+ +++ GI +
Sbjct: 720 MHYFLGVEVTQNEKGIYI 773
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 161 bits (407), Expect = 2e-39
Identities = 80/217 (36%), Positives = 125/217 (56%)
Frame = +1
Query: 1150 LEIARSKAGIVLNQRKYALELLSDSGLLGGKPTTTPMDSSQKFGLSTDTPLSDISSYRRL 1209
+E+ +++ GI + QRKY +LL G+ + P+ K + D + Y+++
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1210 IGKLLYLTTTRPDIAYVVNQLSQFLSAPTNVHEAAAHRVLRYIKGNPGCGLFYPADSSTT 1269
+G L+YL TRPD+ YV++ +S+F++ PT +H A RVLRY+ G G+ Y + S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1270 LTAFSDSDWAGCLDTRKSITGYCMFLGSSLISWRSKKQTTTSRSSCEAEYRAMAATVCEV 1329
L A++DSD+AG LD RKS +GY L S +SW SKKQ + S+ +AE+ A A C+
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1330 QWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYH 1366
W+ +L L S ++MYCDN S + ++ NP H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 118 bits (296), Expect(2) = 2e-36
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Frame = -2
Query: 970 KQDGTLDRYKARLVVKGYTQLEGIDFIDTFSPVAKMTTLRVLLALASSYNWFLHQLDVDN 1029
KQ + R K++LVV+GY Q EGID+ + FSPVA+M +R+L+A A+ + L+Q+DV +
Sbjct: 439 KQA*VITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKS 260
Query: 1030 AFLHAQLDEEIYMSLPQGLH-TEKPNQVCLLQKSLYGLKQASRQWYTTLCKALHTLGFSP 1088
AF++ L EE+++ P G E PN V L K+LYGLKQA R WY L K L GF
Sbjct: 259 AFINGDLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKR 80
Query: 1089 SSADHTLYIKKGTTGSFTALLLYVDDV 1115
D+TL++ K + +YVDD+
Sbjct: 79 GKIDNTLFLLK-RE*ELLIIQVYVDDI 2
Score = 54.3 bits (129), Expect(2) = 2e-36
Identities = 22/53 (41%), Positives = 32/53 (59%)
Frame = -3
Query: 916 VEPKRYSEAVKHDSWRKAMDQEIEALERNHTWILVDKPHDKTPIGCKWVYRIK 968
+EPK EA++ W +M +E+ ER+ W LV +P KT IG +WV+R K
Sbjct: 591 IEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 135 bits (340), Expect = 1e-31
Identities = 80/217 (36%), Positives = 122/217 (55%), Gaps = 7/217 (3%)
Frame = -3
Query: 507 CTFQS----NVHNLWHYRLGHPSLVKGQSINELFPYVQCSKAHVCDVCPVAKQKRMSFPL 562
C+F S N LWH RLGHP G+++N + P V + C+ C + K + FP
Sbjct: 623 CSFTSSSSLNKDALWHARLGHPH---GRALNLMLPGVVFENKN-CEACILGKHCKNVFPR 456
Query: 563 SVTQSTAIFQLIHVDIWGPVSIVSLHGFSYFLTIVDDYSRFTWIYLLKS*AEVKNLVQEF 622
+ T F LI+ D+W S+ S YF+T +D+ S++TW+ L+ S V + + F
Sbjct: 455 TSTVYENCFDLIYTDLWTAPSL-SRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNF 279
Query: 623 CALVANQFETAVKTIRSDNGKEFSLPQFYAT---KGIVHQTSCVETPQQNSIVERKHQHI 679
A V N + +K +RSDNG E++ F + GI+HQTSC TPQQN + +RK++H+
Sbjct: 278 QAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHL 99
Query: 680 LNVARALLFQAHLPKIFWAHAIVHAVFLINRLPSPVL 716
+ VAR+L+FQA+ + A +LIN +P+ VL
Sbjct: 98 MEVARSLMFQAN---------VSTACYLINWIPTKVL 15
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 132 bits (332), Expect = 1e-30
Identities = 86/247 (34%), Positives = 126/247 (50%), Gaps = 7/247 (2%)
Frame = +1
Query: 555 QKRMSFPLSVTQSTAIFQLIHVDIWGPVSIVSLHGFSYFLTIVDDYSRFTWIYLLKS*AE 614
+K++SF + ++ I IH D+WGP + S G Y +TI+DD+ R W+Y L+ E
Sbjct: 49 RKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNE 228
Query: 615 VKNLVQEFCALVANQFETAVKTIRSDNGKEF---SLPQFYATKGIVHQTSCVETPQQNSI 671
+++ LV Q VK + +DN EF +F GI + PQQN +
Sbjct: 229 TFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGV 408
Query: 672 VERKHQHILNVARALLFQAHL--PKIFWAHAIVHAVFLINRLPSPVLDGKCPFQILHKVL 729
ER + +L AR +L A L + W A A L+NR P LD K P I L
Sbjct: 409 AERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNL 588
Query: 730 PDLTNLKVFGSLCFASTLVSHRTKFDPRAKRCVFLGFKPGTKGYIVY--DLKSNDIAISR 787
D +NL++FG C A LV+ K PRA C+FL + +KGY ++ D KS + +SR
Sbjct: 589 VDYSNLRIFG--CPAYALVND-GKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSR 759
Query: 788 NVVFHEN 794
+V F+E+
Sbjct: 760 DVTFNED 780
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 91.3 bits (225), Expect(2) = 3e-30
Identities = 44/118 (37%), Positives = 69/118 (58%)
Frame = +1
Query: 1068 QASRQWYTTLCKALHTLGFSPSSADHTLYIKKGTTGSFTALLLYVDDVLLTGNDLHEIQL 1127
Q+ R W+ + G+ DH ++IK +T L++YVDD+ LTG+ I+
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1128 VKESLHAQFRIKDMGEAKFFLGLEIARSKAGIVLNQRKYALELLSDSGLLGGKPTTTP 1185
+K L +F IKD+G K+FLG+E+AR K G ++QRKY L+LL ++ ++G K P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 60.5 bits (145), Expect(2) = 3e-30
Identities = 28/55 (50%), Positives = 40/55 (71%)
Frame = +2
Query: 1180 KPTTTPMDSSQKFGLSTDTPLSDISSYRRLIGKLLYLTTTRPDIAYVVNQLSQFL 1234
KP+ TPMD++ K G + L D Y+RL+GKL+YL+ TRPDI++VV +SQF+
Sbjct: 338 KPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
oleracea}, partial (12%)
Length = 639
Score = 125 bits (315), Expect = 9e-29
Identities = 57/125 (45%), Positives = 86/125 (68%)
Frame = +2
Query: 1 LSEGNYHNWARAMKMSLLTKNKLGFVDGTIAEPPQDHPVLPFWQRCNMLVLSWLIKSISV 60
L+ GNY W+R+M +SL KNKLG +DGT+ P D P LP W+RCN LVL+W++ SI
Sbjct: 209 LNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLPLWKRCNDLVLTWILHSIEP 388
Query: 61 EIAQSILWRDKATDVWNELRERFAQADLFRISELQEEIFSLKQGDNSVSKFYTSMKTLWD 120
+IA+S+++ D A VW++L +RF+Q D RI ++++EI +QG +S +YT +K+L
Sbjct: 389 DIARSVIFSDTAAAVWSDLHDRFSQGDESRIYQIRQEISECRQGSLLISDYYTKLKSLLG 568
Query: 121 ELDIL 125
+ IL
Sbjct: 569 *IRIL 583
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 120 bits (300), Expect = 5e-27
Identities = 59/146 (40%), Positives = 86/146 (58%)
Frame = +2
Query: 1276 SDWAGCLDTRKSITGYCMFLGSSLISWRSKKQTTTSRSSCEAEYRAMAATVCEVQWLSYL 1335
SDWAG +TRKS +GY LG+ ISW SKKQ + S+ EAEY A + + WL +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1336 LHDLQAPPSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQGLVHLLPIAS 1395
L + + P +YCDN+SA+ ++ NP +H R+KHI++ H +RE + + V + +
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1396 SHQLADIFTKPLTPAPFRHIFSKLGM 1421
++ADIFTKPL F + LGM
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 75.5 bits (184), Expect(2) = 9e-27
Identities = 37/96 (38%), Positives = 56/96 (57%)
Frame = +3
Query: 1328 EVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQGL 1387
E W+ L+ +L +++YCD+QSA+HIA NP++H RTKHI + H VRE V++G
Sbjct: 249 EAIWMQRLMEEL-GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGS 425
Query: 1388 VHLLPIASSHQLADIFTKPLTPAPFRHIFSKLGMYD 1423
V + I ++ LAD TK + F S G+ +
Sbjct: 426 VDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGLLE 533
Score = 64.7 bits (156), Expect(2) = 9e-27
Identities = 34/75 (45%), Positives = 44/75 (58%)
Frame = +1
Query: 1247 RVLRYIKGNPGCGLFYPADSSTTLTAFSDSDWAGCLDTRKSITGYCMFLGSSLISWRSKK 1306
R++RYIKG G + + S T+ + DSD+AG D RKS TGY L +SW SK
Sbjct: 7 RIMRYIKGTSGVAVCF-GGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKL 183
Query: 1307 QTTTSRSSCEAEYRA 1321
QT + S+ EAEY A
Sbjct: 184 QTVVALSTTEAEYMA 228
>BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element polyprotein
[imported] - Arabidopsis thaliana, partial (2%)
Length = 608
Score = 110 bits (276), Expect = 3e-24
Identities = 50/133 (37%), Positives = 83/133 (61%), Gaps = 2/133 (1%)
Frame = +1
Query: 1 LSEGNYHNWARAMKMSLLTKNKLGFVDGTIAEPPQ-DHPV-LPFWQRCNMLVLSWLIKSI 58
L+ NY +W+R+M +L KNK+GF++G+I P + D P W RCN ++LSWL S+
Sbjct: 175 LNGTNYSSWSRSMVHALTAKNKVGFINGSIKTPSEVDQPAEYALWNRCNSMILSWLTHSV 354
Query: 59 SVEIAQSILWRDKATDVWNELRERFAQADLFRISELQEEIFSLKQGDNSVSKFYTSMKTL 118
++A+ ++ A VW + +++F+Q ++ I ++Q+ + SL QG S S ++T +K L
Sbjct: 355 EPDLAKGVIHAKTACQVWEDFKDQFSQKNIPAIYQIQKSLASLSQGTVSASTYFTKIKGL 534
Query: 119 WDELDILNPLPVC 131
WDEL+ LP C
Sbjct: 535 WDELETYRTLPTC 573
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 108 bits (270), Expect = 1e-23
Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Frame = +1
Query: 1248 VLRYIKGNPGCGLFYP--ADSSTTLTAFSDSDWAGCLDTRKSITGYCMFLGSSLISWRSK 1305
VL+Y+ + L Y A L + D+D+AG +DTRKS++G+ L + ISW++
Sbjct: 16 VLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTISWKAN 195
Query: 1306 KQTTTSRSSCEAEYRAMAATVCEVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSY 1365
+Q+ + S+ +AEY A V + WL ++ +L V ++CD+QSA+H+A++ Y
Sbjct: 196 QQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEY-VKIHCDSQSAIHLANHQVY 372
Query: 1366 HERTKHIEVDCHIVREKVQQGLVHLLPIASSHQLADIFTKPLTPAPFRHI 1415
HERTKHI++ H +R+ ++ + + +AS AD+FTK A H+
Sbjct: 373 HERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTKLKKHARATHV 522
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 97.8 bits (242), Expect = 3e-20
Identities = 65/160 (40%), Positives = 92/160 (56%), Gaps = 1/160 (0%)
Frame = -3
Query: 1238 TNVHEAAAHRVLRYIKGNPGCGLFYPADSSTTLTAFSDSDWAGCLDTRKSITGYCMFLGS 1297
T H AA ++L Y+K +P +F+P S + AF DSD ++ + S
Sbjct: 599 TAQHPQAAIQIL-YLKISPSQ*IFFP--S*IQIKAFCDSD*ID--QAA*TLENQSVIFAS 435
Query: 1298 SLISWRSKKQTTTSRSSCEAEYRAMAATVCEVQWLSYLLHDLQAPPSAPVSMYCDNQSAM 1357
S + R + + YR++ +T+CE++WL+YLL+DL+ P +YCDNQSA
Sbjct: 434 S*ATHSYAGNLKKKRYNFKI-YRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAA 258
Query: 1358 -HIAHNPSYHERTKHIEVDCHIVREKVQQGLVHLLPIASS 1396
HIA N S+ ERTKHIE+DCHIVR K+Q L H+L I SS
Sbjct: 257 RHIAANSSFLERTKHIELDCHIVRVKLQLKLFHILHILSS 138
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 93.2 bits (230), Expect = 6e-19
Identities = 45/113 (39%), Positives = 68/113 (59%)
Frame = +1
Query: 665 TPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIVHAVFLINRLPSPVLDGKCPFQI 724
TPQQN + ER ++ +L RA+L A + K FWA A+ A ++INR PS V+D K P ++
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 725 LHKVLPDLTNLKVFGSLCFASTLVSHRTKFDPRAKRCVFLGFKPGTKGYIVYD 777
D ++L VFG + RTK DP++++C+FLG+ KGY ++D
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 90.9 bits (224), Expect = 3e-18
Identities = 44/91 (48%), Positives = 63/91 (68%)
Frame = +2
Query: 943 RNHTWILVDKPHDKTPIGCKWVYRIKYKQDGTLDRYKARLVVKGYTQLEGIDFIDTFSPV 1002
+ T LV KP PIG +W+Y+IK +DGTL +YKARLV KGY + +GIDF + F+PV
Sbjct: 47 QKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPV 226
Query: 1003 AKMTTLRVLLALASSYNWFLHQLDVDNAFLH 1033
++ T+ +LLALA++ +H +DV AFL+
Sbjct: 227 VRIETI*LLLALAATNGC*IHHIDVKIAFLN 319
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 88.2 bits (217), Expect = 2e-17
Identities = 48/124 (38%), Positives = 70/124 (55%), Gaps = 3/124 (2%)
Frame = +1
Query: 1220 RPDIAYVVNQLSQFLSAPTNVHEAAAHRVLRYIKGNPGCGLFYPADSST---TLTAFSDS 1276
RPDI Y V+ +S+F+ P H AA+R+LRY++G GL +P + + L +SDS
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1277 DWAGCLDTRKSITGYCMFLGSSLISWRSKKQTTTSRSSCEAEYRAMAATVCEVQWLSYLL 1336
DW G R+S +GY + ISW +KKQ T+ SS EAEY A + WL ++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1337 HDLQ 1340
+L+
Sbjct: 472 KELK 483
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 85.1 bits (209), Expect = 2e-16
Identities = 55/152 (36%), Positives = 85/152 (55%)
Frame = +2
Query: 876 STAVSSSSSSKGTSYPLSKVISYCNLAPAYHTFVMNITAVVEPKRYSEAVKHDSWRKAMD 935
S V+ +SSSK SY + + Y + + + + IT+ +EPK Y +A + W AM+
Sbjct: 164 SHLVTLNSSSK--SYHIFHYVGY-SFSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAME 334
Query: 936 QEIEALERNHTWILVDKPHDKTPIGCKWVYRIKYKQDGTLDRYKARLVVKGYTQLEGIDF 995
QEI+ LE N+T L K + C+ VY+I +K +G +++YKA+LV K + Q+EG DF
Sbjct: 335 QEIQVLEENNTSTLEPLREGKKWVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF 514
Query: 996 IDTFSPVAKMTTLRVLLALASSYNWFLHQLDV 1027
D K R LL +A++ LH +DV
Sbjct: 515 *D-LCLSNKDDNCRCLLTIAAAKG*QLHLMDV 607
>AW773859
Length = 538
Score = 83.6 bits (205), Expect = 5e-16
Identities = 45/132 (34%), Positives = 68/132 (51%)
Frame = -3
Query: 457 LIQDSNACKMIGTVRAVKGLYIFNKSSISSLASCNSISTSVNPSVHSSSICTFQSNVHNL 516
LIQ+ + KMIG+ +GLY S +T + V TF L
Sbjct: 383 LIQEKRSLKMIGSGELFEGLYFLTTQDTPS-------ATIASSQVQPQPQPTFLPQ-EAL 228
Query: 517 WHYRLGHPSLVKGQSINELFPYVQCSKAHVCDVCPVAKQKRMSFPLSVTQSTAIFQLIHV 576
WH+RLGH S K S++ FP++ + VCD+C ++ K++ F LS +++ ++L H
Sbjct: 227 WHFRLGHLSNRKLLSLHSNFPFITIDQNSVCDICHYSRHKKLPFQLSTNRASKCYELFHF 48
Query: 577 DIWGPVSIVSLH 588
DIWGP S S+H
Sbjct: 47 DIWGPFSTQSIH 12
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,817,924
Number of Sequences: 36976
Number of extensions: 800498
Number of successful extensions: 4712
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 4557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4677
length of query: 1428
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1320
effective length of database: 5,021,319
effective search space: 6628141080
effective search space used: 6628141080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0211.5