BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.20
(162 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI311783 homologue to PIR|T47587|T4 TATA box binding protein (TB... 123 2e-33
TC84105 homologue to PIR|C84507|C84507 hypothetical protein At2g... 60 5e-10
TC90445 homologue to PIR|C84507|C84507 hypothetical protein At2g... 58 1e-09
BQ122721 similar to GP|8843733|dbj SWI2/SNF2-like protein {Arabi... 55 9e-09
TC84487 similar to PIR|T52301|T52301 GYMNOS/PICKLE protein [impo... 53 6e-08
TC84267 weakly similar to PIR|S41478|S41478 DNA repair protein r... 51 2e-07
TC87517 similar to PIR|F84833|F84833 probable SNF2/SWI2 family t... 46 7e-06
TC83002 similar to GP|14532630|gb|AAK64043.1 putative DNA-bindin... 45 1e-05
BG584027 similar to GP|10178052|db helicase-like transcription f... 45 2e-05
TC91548 similar to PIR|D86185|D86185 hypothetical protein [impor... 44 2e-05
TC85956 homologue to GP|8885593|dbj|BAA97523.1 1 4-benzoquinone ... 40 5e-04
BE205152 similar to GP|19347965|gb putative helicase {Arabidopsi... 40 5e-04
TC88686 MTD2 27 2.7
TC77716 similar to GP|20465587|gb|AAM20276.1 unknown protein {Ar... 27 2.7
TC91217 similar to GP|5306274|gb|AAD42006.1| expressed protein {... 27 2.7
TC86275 similar to PIR|E96603|E96603 unknown protein F14G9.26 [i... 27 3.6
TC76895 homologue to SP|P35100|CLPA_PEA ATP-dependent clp protea... 26 6.1
TC80543 similar to PIR|T47646|T47646 hypothetical protein T15C9.... 26 8.0
AL384329 26 8.0
>BI311783 homologue to PIR|T47587|T4 TATA box binding protein (TBP)
associated factor (TAF)-like protein - Arabidopsis
thaliana, partial (6%)
Length = 788
Score = 123 bits (309), Expect(2) = 2e-33
Identities = 71/121 (58%), Positives = 81/121 (66%), Gaps = 24/121 (19%)
Frame = +2
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLTSADTLVFVEHD N MRD QAMD+A RLGQ+KVVNVHRLIMR TLEE+VMS
Sbjct: 17 HVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMS 196
Query: 63 KERFEVSVANAANNLRLLSV------------------------KSSVDHSDGVTELVGS 98
+RF+VSVANA N S+ KSS D+SDG +L+GS
Sbjct: 197 LQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKGSSVAKSSEDNSDGDPKLLGS 376
Query: 99 G 99
G
Sbjct: 377 G 379
Score = 35.0 bits (79), Expect(2) = 2e-33
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Frame = +3
Query: 100 DWWIYETNHIIQMNPIWIKSWQSLML-----------YTFHPRKRLQILTL 139
DW IY TNH IQ + I + W+SLM+ YTF LQILTL
Sbjct: 405 DWRIYGTNHSIQRSTI*VNFWRSLMVNFPDSFQSECTYTF---PILQILTL 548
>TC84105 homologue to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (15%)
Length = 834
Score = 59.7 bits (143), Expect = 5e-10
Identities = 24/61 (39%), Positives = 41/61 (66%)
Frame = +1
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSKE 64
GG G+NL +ADT++ + D N D QAM +A R+GQ +VVN++R + ++EE ++ +
Sbjct: 220 GGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERA 399
Query: 65 R 65
+
Sbjct: 400 K 402
>TC90445 homologue to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (29%)
Length = 1672
Score = 58.2 bits (139), Expect = 1e-09
Identities = 29/92 (31%), Positives = 48/92 (51%), Gaps = 7/92 (7%)
Frame = +2
Query: 6 GFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK-- 63
G G+NL +ADT++ + D N D QAM +A R+GQ+ VVN++R + ++EE ++ +
Sbjct: 1160 GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAK 1339
Query: 64 -----ERFEVSVANAANNLRLLSVKSSVDHSD 90
+ + NA L VK + D
Sbjct: 1340 KKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFD 1435
>BQ122721 similar to GP|8843733|dbj SWI2/SNF2-like protein {Arabidopsis
thaliana}, partial (19%)
Length = 650
Score = 55.5 bits (132), Expect = 9e-09
Identities = 25/59 (42%), Positives = 39/59 (65%)
Frame = +1
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
GG G+NLT+ADT + + D N D QAMD+ R+GQ K V+V+RL ++E +++ +
Sbjct: 202 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKR 378
>TC84487 similar to PIR|T52301|T52301 GYMNOS/PICKLE protein [imported] -
Arabidopsis thaliana, partial (14%)
Length = 612
Score = 52.8 bits (125), Expect = 6e-08
Identities = 26/53 (49%), Positives = 35/53 (65%)
Frame = +3
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLE 57
GG G+NL +ADT+V + D N D QAM +A RLGQ V +++LI R T+E
Sbjct: 453 GGLGINLATADTVVIYDRDWNPHADLQAMARAHRLGQTNKVLIYKLITRGTIE 611
>TC84267 weakly similar to PIR|S41478|S41478 DNA repair protein rad8 -
fission yeast (Schizosaccharomyces pombe), partial (5%)
Length = 751
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/67 (40%), Positives = 44/67 (65%)
Frame = +2
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSKE 64
G FG+NLT A+ + VE N ++QA+ +A RLGQ + V V R +MRDT+E ++ S++
Sbjct: 314 GAFGLNLTCANRVFIVELQWNPSVENQAIARAIRLGQGREVLVTRYVMRDTVEVEMSSQQ 493
Query: 65 RFEVSVA 71
+ ++A
Sbjct: 494 SHKKNLA 514
>TC87517 similar to PIR|F84833|F84833 probable SNF2/SWI2 family
transcription factor [imported] - Arabidopsis thaliana,
partial (6%)
Length = 773
Score = 45.8 bits (107), Expect = 7e-06
Identities = 22/64 (34%), Positives = 36/64 (55%)
Frame = +2
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
I G G+NL A +V VE N + QA+ + R+GQ++ +HR +++DT+EE +
Sbjct: 158 IQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKQKTLIHRFLVKDTVEESIY 337
Query: 62 SKER 65
R
Sbjct: 338 KLNR 349
>TC83002 similar to GP|14532630|gb|AAK64043.1 putative DNA-binding protein
{Arabidopsis thaliana}, partial (18%)
Length = 1088
Score = 45.1 bits (105), Expect = 1e-05
Identities = 22/73 (30%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Frame = +3
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ G G+N+ +A ++ ++ N + QA+D+A R+GQ + V V R+ ++DT+E++++
Sbjct: 624 LKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRIL 803
Query: 62 S-KERFEVSVANA 73
+ +E VA+A
Sbjct: 804 ALQEEKRKMVASA 842
>BG584027 similar to GP|10178052|db helicase-like transcription factor-like
protein {Arabidopsis thaliana}, partial (15%)
Length = 830
Score = 44.7 bits (104), Expect = 2e-05
Identities = 20/54 (37%), Positives = 37/54 (68%)
Frame = +3
Query: 8 GMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
G+NLT+A + +E N + QAMD+ R+GQ++ V + RLI ++++EE+++
Sbjct: 456 GINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKIL 617
>TC91548 similar to PIR|D86185|D86185 hypothetical protein [imported] -
Arabidopsis thaliana, complete
Length = 611
Score = 44.3 bits (103), Expect = 2e-05
Identities = 24/86 (27%), Positives = 46/86 (52%), Gaps = 5/86 (5%)
Frame = +2
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ GG +NLT A + ++ N + QA D+ R+GQ K + + R ++ +T+EE+++
Sbjct: 95 LKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERIL 274
Query: 62 SKER-----FEVSVANAANNLRLLSV 82
+ FE +V ++ L L+V
Sbjct: 275 KLQEKKELVFEGAVGGSSEALGKLTV 352
>TC85956 homologue to GP|8885593|dbj|BAA97523.1 1 4-benzoquinone
reductase-like; Trp repressor binding protein-like
{Arabidopsis thaliana}, partial (98%)
Length = 1976
Score = 39.7 bits (91), Expect = 5e-04
Identities = 18/51 (35%), Positives = 36/51 (70%)
Frame = +1
Query: 8 GMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEE 58
G++LT+A ++ ++ + N + QA+ +A R GQ+K+V V++L++ +LEE
Sbjct: 355 GISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEE 507
>BE205152 similar to GP|19347965|gb putative helicase {Arabidopsis thaliana},
partial (27%)
Length = 626
Score = 39.7 bits (91), Expect = 5e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMD 34
GG G+NLT+ADT++F E D N D QAMD
Sbjct: 535 GGLGINLTAADTVIFYESDWNPTLDLQAMD 624
>TC88686 MTD2
Length = 934
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 96 VGSGDWWIY-ETNHIIQMNPIWIKSWQSLMLYTFHPRKRLQILTLALRKVRFD 147
V SGD WIY +T+ I+ + I+ ++ + L LY ++L ++ R V +D
Sbjct: 613 VNSGDLWIYTDTSDIVDVGTIFKENCKILFLYI----EKLPLIIPDPRHVSYD 759
>TC77716 similar to GP|20465587|gb|AAM20276.1 unknown protein {Arabidopsis
thaliana}, partial (63%)
Length = 2392
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = +1
Query: 98 SGDWWIYETNHIIQMNPIWIKSWQSLMLYTFH 129
SG W+ + N I++ P W W+ L+L H
Sbjct: 970 SGSWFQFRENLRIELQPTW---WKDLLLVWLH 1056
>TC91217 similar to GP|5306274|gb|AAD42006.1| expressed protein {Arabidopsis
thaliana}, partial (23%)
Length = 1076
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -3
Query: 101 WWIYETNHIIQMNPIWI 117
WWIY + I+Q NP+ I
Sbjct: 612 WWIYVFDEIVQKNPLMI 562
>TC86275 similar to PIR|E96603|E96603 unknown protein F14G9.26 [imported] -
Arabidopsis thaliana, partial (51%)
Length = 961
Score = 26.9 bits (58), Expect = 3.6
Identities = 10/41 (24%), Positives = 21/41 (50%)
Frame = -3
Query: 115 IWIKSWQSLMLYTFHPRKRLQILTLALRKVRFDRLVGALGR 155
IW+++W L + P ++ + LT+ ++ D +L R
Sbjct: 125 IWLRNWVELWMNLEAPSEKFETLTMVWKRKMMDSFRSSLAR 3
>TC76895 homologue to SP|P35100|CLPA_PEA ATP-dependent clp protease
ATP-binding subunit clpA homolog chloroplast precursor.
[Garden pea], complete
Length = 3425
Score = 26.2 bits (56), Expect = 6.1
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 32 AMDKARRLGQEKVVNVHRLIMRDTLEEQVMSKERFEVSVANAANNLRLLSVKSSVDHSDG 91
++++AR+LG + + H L+ L E R ++ N+R ++ + +D
Sbjct: 770 SLEEARQLGHNYIGSEHLLL--GLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADN 943
Query: 92 VTELVGSG 99
VT VGSG
Sbjct: 944 VTATVGSG 967
>TC80543 similar to PIR|T47646|T47646 hypothetical protein T15C9.70 -
Arabidopsis thaliana, partial (60%)
Length = 1017
Score = 25.8 bits (55), Expect = 8.0
Identities = 9/28 (32%), Positives = 14/28 (49%)
Frame = +3
Query: 103 IYETNHIIQMNPIWIKSWQSLMLYTFHP 130
I N I +W+ W+SL Y++ P
Sbjct: 792 IENVNPAIGFKLLWLSDWESLQSYSYDP 875
>AL384329
Length = 480
Score = 25.8 bits (55), Expect = 8.0
Identities = 9/22 (40%), Positives = 11/22 (49%)
Frame = +3
Query: 100 DWWIYETNHIIQMNPIWIKSWQ 121
DWW+Y I W KSW+
Sbjct: 264 DWWLYSNCFWID*ILCWFKSWK 329
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,380,953
Number of Sequences: 36976
Number of extensions: 55004
Number of successful extensions: 468
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of query: 162
length of database: 9,014,727
effective HSP length: 89
effective length of query: 73
effective length of database: 5,723,863
effective search space: 417841999
effective search space used: 417841999
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0211.20