BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.11
(298 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85286 similar to GP|3776572|gb|AAC64889.1| ESTs gb|R65052 gb|... 456 e-129
AW689987 weakly similar to GP|1911338|gb|A unknown {Orgyia pseud... 37 0.009
TC90679 similar to PIR|T10521|T10521 beta-glucosidase (EC 3.2.1.... 35 0.035
BQ137264 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 35 0.045
TC86214 similar to PIR|B86201|B86201 protein F12K11.9 [imported]... 34 0.059
AW686235 similar to PIR|D96839|D968 F23A5.5 [imported] - Arabido... 34 0.059
TC79894 similar to GP|21104712|dbj|BAB93301. hypothetical protei... 34 0.059
CA919967 similar to GP|21522866|em cDNA coding for hydroxyphenyl... 34 0.077
TC77193 homologue to GP|21593495|gb|AAM65462.1 glycine rich prot... 33 0.13
TC77194 homologue to GP|21593495|gb|AAM65462.1 glycine rich prot... 32 0.23
TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 32 0.29
TC76916 MtN4 31 0.50
TC78402 weakly similar to PIR|B84853|B84853 hypothetical protein... 31 0.50
AL368332 weakly similar to GP|21322711|e pherophorin-dz1 protein... 31 0.66
TC91301 similar to GP|19310721|gb|AAL85091.1 unknown protein {Ar... 31 0.66
TC85305 aquaporin 31 0.66
TC76311 homologue to GP|3204132|emb|CAA07235.1 extensin {Cicer a... 30 0.86
AL376214 homologue to GP|3204132|emb| extensin {Cicer arietinum}... 30 0.86
TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed pr... 30 0.86
TC76430 similar to PIR|T07623|T07623 extensin homolog HRGP2 - so... 30 0.86
>TC85286 similar to GP|3776572|gb|AAC64889.1| ESTs gb|R65052 gb|AA712146
gb|H76533 gb|H76282 gb|AA650771 gb|H76287 gb|AA650887
gb|N37383, partial (77%)
Length = 1947
Score = 456 bits (1174), Expect = e-129
Identities = 236/298 (79%), Positives = 264/298 (88%)
Frame = +2
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 60
M T+FPP+ +L PL ++K SP S PKS SL +PI+S+L+K QTLSLKP
Sbjct: 902 MTTLFPPN-SLSPLLNLKSSP--------SLQPKSTSLISYKPIVSNLKKTQTLSLKPPT 1054
Query: 61 ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 120
S T+ L+HAQQGLAALAITLALNFSP+ LSGNA ASEFDV+NE P K++YVVDDAGVL
Sbjct: 1055 LPSCTTLLTHAQQGLAALAITLALNFSPLLLSGNAFASEFDVINERPPKEAYVVDDAGVL 1234
Query: 121 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI 180
SRVT+SDLK LL+DLESRK FHINFIT+RKLTSKADAFE+ADQ+LERWYPSVEEGNDKG+
Sbjct: 1235 SRVTKSDLKRLLADLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGV 1414
Query: 181 VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAID 240
VVLVTSQKEGAVTGGPAFVQAVGENILDATV+ENLPVLATDEKYNEA+ STAKRLVAAID
Sbjct: 1415 VVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPVLATDEKYNEAIYSTAKRLVAAID 1594
Query: 241 GLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK 298
GLPDPGGP VKD+KRESNF+TKEETE+KRGQFSLVVGGLLV+AFVVPM+QYYAYVAKK
Sbjct: 1595 GLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK 1768
>AW689987 weakly similar to GP|1911338|gb|A unknown {Orgyia pseudotsugata
single capsid nuclear polyhedrosis virus}, partial (11%)
Length = 675
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = +1
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLAS 62
T PP P LSS PSP ++ + PP P+P +NS S I++ N+ L P L S
Sbjct: 190 TPIPP--PTPALSSPTPSPMKIPIYPPPPIPSTNS--TSSTSINNNNNNKPNLLPPILTS 357
Query: 63 SGTSWLSHA 71
S S L A
Sbjct: 358 SIPSPLPFA 384
>TC90679 similar to PIR|T10521|T10521 beta-glucosidase (EC 3.2.1.21) -
common nasturtium, partial (43%)
Length = 1017
Score = 35.0 bits (79), Expect = 0.035
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Frame = -3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPK------------------SNSLFCSRPIISS 47
P M +P + S+ SP ++++ PP LPK S+ LF P S+
Sbjct: 409 PSRMVVPVVRSLPLSPCQVIVHPPH*LPKLSA*LPATKTFEAFLGRGSSGLFAYLPFFSN 230
Query: 48 LRKNQTLSLKPSLASSGTSW 67
R +T SL SL S +W
Sbjct: 229 TRDFRTASLANSLCSLLPNW 170
>BQ137264 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (3%)
Length = 1196
Score = 34.7 bits (78), Expect = 0.045
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = -1
Query: 5 FPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPS 59
+PP+ TLPP SS+ P+P LLS LP + + C P+I L ++ L PS
Sbjct: 326 WPPNTTLPPASSL-PTPLLFLLSSSRVLPLTATPHC--PLIFVLTTLSSVRLHPS 171
>TC86214 similar to PIR|B86201|B86201 protein F12K11.9 [imported] -
Arabidopsis thaliana, partial (84%)
Length = 1763
Score = 34.3 bits (77), Expect = 0.059
Identities = 25/59 (42%), Positives = 32/59 (53%), Gaps = 6/59 (10%)
Frame = +2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSP-----PSPLPKSNSLFCSRPIISSLRKNQTL-SLKP 58
PPH+ LP LS P P + LSP PSPLP ++ P + L K++TL SL P
Sbjct: 428 PPHIPLPFLSPHLPQPPQSPLSPLPLASPSPLPTAS------PSVLLLLKSKTLKSLSP 586
>AW686235 similar to PIR|D96839|D968 F23A5.5 [imported] - Arabidopsis
thaliana, partial (20%)
Length = 666
Score = 34.3 bits (77), Expect = 0.059
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPS 30
P H+ P S PSPT+LLLSPPS
Sbjct: 41 PSHLRRRPFVSTPPSPTKLLLSPPS 115
>TC79894 similar to GP|21104712|dbj|BAB93301. hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (28%)
Length = 1034
Score = 34.3 bits (77), Expect = 0.059
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Frame = +1
Query: 9 MTLPPLSSIKPSPTRLLLSP----PSPLPKSNS-------LFCSRPIISSLRKNQTLSLK 57
M++ + ++KP+ T LLSP P PLP S+S +FCS P S+L + L
Sbjct: 10 MSMSIIHNLKPTTTTTLLSPSISSPFPLPSSSSSSSFKPPIFCSNP--SNLSRRLFLPSV 183
Query: 58 PSLASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALAS--EFD 101
+ + T + A LAI ++ +F G L S EFD
Sbjct: 184 SGIWDAITGGSGNNNTNEALLAIRRGMS---LFRQGEVLGSVVEFD 312
>CA919967 similar to GP|21522866|em cDNA coding for hydroxyphenylpyruvate
dioxygenase {Arabidopsis thaliana}, partial (40%)
Length = 778
Score = 33.9 bits (76), Expect = 0.077
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPS--PLPKSNSLFCSRPIISSLRKNQTLSLKPSLASS 63
PPH+ LP LS P P PPS PL ++L + P SL K+ T + PSL++
Sbjct: 491 PPHIPLPFLSPRLPQPPPF---PPSLPPLASPSALHTALPFAPSLLKSTTQN-SPSLSA* 658
Query: 64 GTSWLSHAQQGLAALAITL 82
T+ H + A L
Sbjct: 659 TTAHFHHLLPSFSKTASNL 715
>TC77193 homologue to GP|21593495|gb|AAM65462.1 glycine rich protein-like
{Arabidopsis thaliana}, partial (85%)
Length = 989
Score = 33.1 bits (74), Expect = 0.13
Identities = 26/68 (38%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Frame = -3
Query: 5 FPPHMTLP----PLS--SIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSL-K 57
FPP + LP PL+ S KP P + PP+P S L RP LR + S
Sbjct: 519 FPPWLALPRPPAPLAPPSSKPRPVPFVWRPPAPAASSLPLPLPRPTPGGLRSVRLFSS*T 340
Query: 58 PSLASSGT 65
S+ SSGT
Sbjct: 339 LSITSSGT 316
>TC77194 homologue to GP|21593495|gb|AAM65462.1 glycine rich protein-like
{Arabidopsis thaliana}, partial (96%)
Length = 700
Score = 32.3 bits (72), Expect = 0.23
Identities = 26/68 (38%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Frame = -1
Query: 5 FPPHMTLP----PLS--SIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSL-K 57
FPP + LP PL+ S KP P + PP+P S L RP LR + S
Sbjct: 574 FPPWLVLPRPPAPLAPPSSKPRPGPFVWRPPAPAASSLPLPLPRPTPGGLRSVRLFSS*T 395
Query: 58 PSLASSGT 65
S+ SSGT
Sbjct: 394 LSITSSGT 371
>TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (15%)
Length = 984
Score = 32.0 bits (71), Expect = 0.29
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 7 PHMTLPPLSSIKP---SPTRLLLSPPSPLPKSNS 37
P + PP S +P SP R L+SPP PLP+S S
Sbjct: 346 PTASPPPRSPPRPPPRSPPRQLMSPPRPLPRSPS 447
Score = 27.3 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 26/59 (43%), Gaps = 5/59 (8%)
Frame = +1
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKS-----NSLFCSRPIISSLRKNQTLSLKPS 59
PP T PP+S P P L PP PLP + SLF + ++ T S P+
Sbjct: 532 PPAAT-PPVSRPPPRPALRRLLPPPPLPPTLPSSMASLFLAASVLPPASPPTT*SSPPT 705
>TC76916 MtN4
Length = 1850
Score = 31.2 bits (69), Expect = 0.50
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 4 IFPPHMTLPPLSSIKPSPTR--LLLSPPSPLP 33
+FPPH+ LPP+ + P + +++PP+P P
Sbjct: 997 VFPPHVPLPPVVPVTPPYVQPPPIVTPPTPTP 1092
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 4 IFPPHMTLPPLSSIKPSPTRLLLSPPSPLP 33
+FPPH+ LPP + PSP + +PP P
Sbjct: 910 VFPPHVPLPP---VVPSPPPYVPTPPIVKP 990
>TC78402 weakly similar to PIR|B84853|B84853 hypothetical protein At2g42370
[imported] - Arabidopsis thaliana, partial (14%)
Length = 1982
Score = 31.2 bits (69), Expect = 0.50
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = -1
Query: 6 PPHMTLPPLSSIKP-----SPTRLLLSPPSPLP 33
PPH+ LPP S P SP LLL PP P P
Sbjct: 518 PPHLPLPPHLSPHPLPPHPSPHPLLLHPPPPPP 420
>AL368332 weakly similar to GP|21322711|e pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (10%)
Length = 478
Score = 30.8 bits (68), Expect = 0.66
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 6 PPHMTLPPLSS--IKPSPTRLLLSPPSPLPKSNS 37
PPH PP I PSP + SPP PLP S S
Sbjct: 274 PPHNHPPPSPHHPIAPSPPHVRPSPPPPLPPSPS 375
>TC91301 similar to GP|19310721|gb|AAL85091.1 unknown protein {Arabidopsis
thaliana}, partial (66%)
Length = 693
Score = 30.8 bits (68), Expect = 0.66
Identities = 26/68 (38%), Positives = 34/68 (49%), Gaps = 9/68 (13%)
Frame = +3
Query: 11 LPPLSS------IKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQT---LSLKPSLA 61
LPPLSS + PSP+ PPSP P S ++ SL N T LSL P +
Sbjct: 291 LPPLSSPFFLTLLSPSPSPSPTPPPSPPPLS--------LLLSLVNNPTSLALSLVPLSS 446
Query: 62 SSGTSWLS 69
SS +++S
Sbjct: 447 SSAFAYVS 470
>TC85305 aquaporin
Length = 1221
Score = 30.8 bits (68), Expect = 0.66
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Frame = +3
Query: 7 PHMTLPPL--SSIKPSPTR---LLLSP---PSPLPKSNSLFCSRPII------------S 46
P LPPL SS+ PSP LLLSP SP+ S L S P + S
Sbjct: 240 PTTVLPPLPVSSLPPSPMHSLSLLLSPLVLTSPVDMSTPLSPSVPSLVVTSPSSVVSFTS 419
Query: 47 SLRKNQTLSLKPSLASSGTSWLSHA 71
SL + L L PSL+ S H+
Sbjct: 420 SLNSSDPLLLPPSLSLSPLRLFQHS 494
>TC76311 homologue to GP|3204132|emb|CAA07235.1 extensin {Cicer arietinum},
partial (77%)
Length = 973
Score = 30.4 bits (67), Expect = 0.86
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPL 32
P H T PP S P+PT + SPP P+
Sbjct: 311 PYHYTSPPPPSPAPAPTYIYKSPPPPM 391
>AL376214 homologue to GP|3204132|emb| extensin {Cicer arietinum}, partial
(48%)
Length = 362
Score = 30.4 bits (67), Expect = 0.86
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPL 32
P H T PP S P+PT + SPP P+
Sbjct: 144 PYHYTSPPPPSPAPAPTYIYKSPPPPM 224
>TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed protein
{Arabidopsis thaliana}, partial (37%)
Length = 1366
Score = 30.4 bits (67), Expect = 0.86
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 60
MG + H T S K SPT+ LSPP P+ S+S + + S K+ SL ++
Sbjct: 40 MGNLSSTHSTFAIFSPHKISPTKTPLSPP-PISASSSTASTPTLTRSDPKSNLTSLLTTM 216
Query: 61 ASSGTS 66
S +S
Sbjct: 217 ISQISS 234
>TC76430 similar to PIR|T07623|T07623 extensin homolog HRGP2 - soybean
(fragment), partial (61%)
Length = 912
Score = 30.4 bits (67), Expect = 0.86
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPL 32
P H T PP S P+PT + SPP P+
Sbjct: 198 PYHYTSPPPPSPAPAPTYIYKSPPPPM 278
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,294,279
Number of Sequences: 36976
Number of extensions: 126864
Number of successful extensions: 1312
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of query: 298
length of database: 9,014,727
effective HSP length: 96
effective length of query: 202
effective length of database: 5,465,031
effective search space: 1103936262
effective search space used: 1103936262
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0211.11