TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0209.4
         (342 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79174 homologue to PIR|T13029|T13029 beta-adaptin homolog F8L2...    29  3.0
TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate deh...    28  5.1
AL365936                                                               27  8.7

>TC79174 homologue to PIR|T13029|T13029 beta-adaptin homolog F8L21.170 -
           Arabidopsis thaliana, partial (27%)
          Length = 830

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 27/55 (48%)
 Frame = -2

Query: 194 VDVSARTILVSTLGILAKVPSLGGRIRPLGVGGALPIWRSGLASSSFATAIRAIM 248
           +  SA T L +T+G+L+ + S     +PL          S   S SFAT + A++
Sbjct: 655 ISASAATALATTIGLLSDIKSFSDSKKPLS------STNSAFMSYSFATQMAAVL 509


>TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase 
           chloroplast precursor (EC 1.1.1.95) (3-PGDH). [Mouse-ear
           cress], partial (87%)
          Length = 2474

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 40  PKMRNDNQSCDTTPTLTQSESRTINSLFTSMTSLL 74
           P ++N   S  +TPTL +S   T+NSL  ++ +++
Sbjct: 177 PNLQNPLTSHSSTPTLLESYPTTLNSLMLTLNNVV 281


>AL365936 
          Length = 441

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
 Frame = +2

Query: 1   MKVSQPK--MASMRPPYVR---------QTPCDPHGREPQKKLIVGDLPCPKMRNDN--Q 47
           MK   PK  M   RPP  R         QTP +   + P  KLI+G    PK RN +  Q
Sbjct: 113 MKFPNPKLIMGMPRPPKSRNPSLKQSTHQTPQNQTMKFPNPKLIMGMPRPPKSRNPSLKQ 292

Query: 48  SCDTTP 53
           S   TP
Sbjct: 293 STHQTP 310


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,230,151
Number of Sequences: 36976
Number of extensions: 132360
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of query: 342
length of database: 9,014,727
effective HSP length: 97
effective length of query: 245
effective length of database: 5,428,055
effective search space: 1329873475
effective search space used: 1329873475
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)