BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.6
(90 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP... 37 2e-06
TC77571 homologue to GP|20804846|dbj|BAB92528. putative rust res... 29 0.27
TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein... 28 0.79
BF633555 27 1.0
AW684949 homologue to GP|9049409|dbj| hypothetical protein {Oryz... 27 1.4
TC92421 similar to GP|21554368|gb|AAM63475.1 unknown {Arabidopsi... 27 1.8
TC83882 similar to GP|20197942|gb|AAD31580.2 putative farnesylat... 26 2.3
TC80418 similar to GP|14594931|emb|CAC43326. putative beta5 prot... 26 2.3
TC79021 similar to GP|14090343|dbj|BAB55502. contains EST C98129... 26 3.0
TC83570 similar to GP|18376118|emb|CAD21184. related to RNA anne... 26 3.0
BI265544 26 3.0
TC81294 weakly similar to PIR|E96501|E96501 hypothetical protein... 26 3.0
CA920886 similar to GP|11994399|db contains similarity to recept... 26 3.0
TC77402 similar to PIR|T50691|T50691 amino acid permease 6 [impo... 25 3.9
TC77076 similar to PIR|T07734|T07734 homeotic protein VAHOX1 - t... 25 3.9
TC91649 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine ma... 25 3.9
TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleopori... 25 3.9
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi... 25 3.9
BF633770 25 5.1
>TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP2-like
transposon protein {Oryza sativa (japonica
cultivar-group)}, partial (10%)
Length = 2433
Score = 37.4 bits (85), Expect(2) = 2e-06
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 2 KSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGK 43
KSHD H ++ L + + ++P V+ L LS FFR LC K
Sbjct: 346 KSHDAHFMLHYLLQIPIRSTMPKAVAQPLIRLSRFFRSLCQK 471
Score = 28.1 bits (61), Expect(2) = 2e-06
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 64 MEMLFPLSFFTVSVHLILSL 83
+EM+FP SFF V VHL + L
Sbjct: 534 LEMVFPPSFFDVMVHLAIHL 593
>TC77571 homologue to GP|20804846|dbj|BAB92528. putative rust resistance
protein {Oryza sativa (japonica cultivar-group)},
partial (1%)
Length = 954
Score = 29.3 bits (64), Expect = 0.27
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -1
Query: 37 FRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFPLSFFT 74
F +CG K+ L IV+ C + FPL+FFT
Sbjct: 120 FDYVCG*KRRSKSCTSLYRSIVVFYCEVHCKFPLTFFT 7
>TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein T28I19.100
- Arabidopsis thaliana, partial (14%)
Length = 1460
Score = 27.7 bits (60), Expect = 0.79
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 58 VLTLCHMEMLFPLSFFTVSVHLILSLFFLWLLV 90
+L C M + F + FF+ +H++ + FF ++LV
Sbjct: 587 LLHFCSMLIFFFILFFSPFMHIVFTFFFSFVLV 489
>BF633555
Length = 513
Score = 27.3 bits (59), Expect = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 69 PLSFFTVSVHLILSLFFLWLLV 90
PLSF+ + + LIL LF W+++
Sbjct: 339 PLSFYKLQICLILPLFLCWVML 274
>AW684949 homologue to GP|9049409|dbj| hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (7%)
Length = 275
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -1
Query: 59 LTLCHMEMLFPLSFFTVSVHLILSLFFL 86
L LCH +L LSFF V +H IL L L
Sbjct: 113 LFLCHQNILLQLSFF*V-LHKILQLLLL 33
>TC92421 similar to GP|21554368|gb|AAM63475.1 unknown {Arabidopsis
thaliana}, partial (41%)
Length = 977
Score = 26.6 bits (57), Expect = 1.8
Identities = 21/61 (34%), Positives = 27/61 (43%)
Frame = -3
Query: 26 VSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFPLSFFTVSVHLILSLFF 85
VS +L ELS F LC + TL +LF L FFT H + +LFF
Sbjct: 381 VSHLLPELSLLFHCLCHSTFH------------FTLQSYHLLF-LLFFTCLQHFLSALFF 241
Query: 86 L 86
+
Sbjct: 240 I 238
>TC83882 similar to GP|20197942|gb|AAD31580.2 putative farnesylated protein
{Arabidopsis thaliana}, partial (4%)
Length = 670
Score = 26.2 bits (56), Expect = 2.3
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = -2
Query: 3 SHDFHILMEQFLPLAMW---GSLPDEVSAVLN---ELSSFFRQLCGKVLNVKALDKLQHD 56
SH+ H+ + LPL ++ L + + N S F L K + L K Q+
Sbjct: 519 SHNLHLQLHHHLPLELYLHHHPLLLNLFKIFNTQKPKSLNFSTLLSKFQTLTLLVKTQNP 340
Query: 57 IVLTLCHMEMLFPLSFFTVSVHLILSLFFLWLLV 90
+L + + FPL + +H LF W++V
Sbjct: 339 NLLNFLTLLVNFPLLLLLLLLH---QLFSFWVVV 247
>TC80418 similar to GP|14594931|emb|CAC43326. putative beta5 proteasome
subunit {Nicotiana tabacum}, partial (10%)
Length = 1170
Score = 26.2 bits (56), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 53 LQHDIVLTLCHMEMLFPLSFFTVSVHLILSLFF 85
LQH+ + C +L F VS L++SLFF
Sbjct: 374 LQHNDLKLRCFNNILSSTGLFKVSSKLLISLFF 276
>TC79021 similar to GP|14090343|dbj|BAB55502. contains EST
C98129(C0752)~unknown protein {Oryza sativa (japonica
cultivar-group)}, partial (36%)
Length = 1386
Score = 25.8 bits (55), Expect = 3.0
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -2
Query: 51 DKLQHDIVLTLCHMEMLFPLSFFTVSVHL 79
DKL HD+ L L + ++FPLSF+ S+H+
Sbjct: 1265 DKL-HDVPL*L--VNIIFPLSFYAPSLHV 1188
>TC83570 similar to GP|18376118|emb|CAD21184. related to RNA annealing
protein {Neurospora crassa}, partial (26%)
Length = 1333
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 18 MWGSLPDEVSAVLNELSSFFRQ 39
+W SLPD +S VL ++SF R+
Sbjct: 356 LWSSLPDMMSVVLVIVASFNRE 291
>BI265544
Length = 408
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 63 HMEMLFPLSFFTVSVHLILSLFFLWL 88
+ EMLF L FF + + + LF LW+
Sbjct: 161 YSEMLFSLKFFNFYLFVNIFLFDLWI 238
>TC81294 weakly similar to PIR|E96501|E96501 hypothetical protein F28H19.3
[imported] - Arabidopsis thaliana, partial (9%)
Length = 1154
Score = 25.8 bits (55), Expect = 3.0
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Frame = +2
Query: 7 HILMEQFLPLA-MWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHME 65
H+L LP + +W + E ++ +F + L++KA DKL DI+ T +
Sbjct: 833 HVLSADLLPRSEVWPNSFKEEGPTDESIALYFFP-GNRRLSIKAFDKLVDDIICTEAAVR 1009
Query: 66 --------MLFPLSFFTVSVHLILSLFFLW 87
++FP + + ++LW
Sbjct: 1010VVTENAVLLIFPSDLLPIRHQKFQTKYYLW 1099
>CA920886 similar to GP|11994399|db contains similarity to receptor protein
kinase~gene_id:MIL23.20 {Arabidopsis thaliana}, partial
(25%)
Length = 818
Score = 25.8 bits (55), Expect = 3.0
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = -2
Query: 59 LTLCHMEMLFPLSFFTVSVHLILSLFFLWLLV 90
L CH ML F ++++L+LFF+ LL+
Sbjct: 499 LDTCHQNMLNMAMFLQK*MYMLLALFFMNLLL 404
>TC77402 similar to PIR|T50691|T50691 amino acid permease 6 [imported] -
Arabidopsis thaliana, partial (90%)
Length = 1902
Score = 25.4 bits (54), Expect = 3.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -2
Query: 57 IVLTLCHMEMLFPLSFFTVSVHLILSLFFLWL 88
I++ +M +L ++F T++ HLI+ + + W+
Sbjct: 1892 IIVHYINMVLLVGVNFSTINKHLIIMVQYTWI 1797
>TC77076 similar to PIR|T07734|T07734 homeotic protein VAHOX1 - tomato,
partial (43%)
Length = 1664
Score = 25.4 bits (54), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 59 LTLCHMEMLFPLSFFTVSVHLILSLF 84
L L H E F L V +HLILS+F
Sbjct: 672 LNLIH*ETPFLLGLMKVLIHLILSVF 595
>TC91649 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine max},
partial (93%)
Length = 1143
Score = 25.4 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = +1
Query: 52 KLQHDIVLTLCHMEMLFPLSFFTVSVHLILSLFFLWL 88
+LQH I + +L+ L VS+H ++ F WL
Sbjct: 13 RLQHFIFTSSSFSFLLWILHLVKVSIHCTIAKLFTWL 123
>TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleoporin PRECOZ
{Arabidopsis thaliana}, partial (48%)
Length = 2532
Score = 25.4 bits (54), Expect = 3.9
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +3
Query: 4 HDFHILMEQFLPLAMWGSLPDEVS 27
HD I +FL L MW LP + S
Sbjct: 1014 HDIQIDWRRFLGLLMWYQLPPDTS 1085
>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
protein {Glycine max}, partial (90%)
Length = 488
Score = 25.4 bits (54), Expect = 3.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 44 VLNVKALDKLQHDIVLTLCHMEMLFPLSFFTVSVHLILSLF 84
+L V L+ + H +L+ CH S FT+ HL +S F
Sbjct: 248 ILTVHLLNCISHRFLLSECHKTKTS*SSSFTIVNHLGISDF 126
>BF633770
Length = 510
Score = 25.0 bits (53), Expect = 5.1
Identities = 11/42 (26%), Positives = 21/42 (49%), Gaps = 7/42 (16%)
Frame = +2
Query: 55 HDIVLTLCHMEMLFPLS-------FFTVSVHLILSLFFLWLL 89
H+ V + H +++ L F++ H+ ++FF WLL
Sbjct: 347 HNFVTLISHFQLILKLIATRKFVLFYSY*FHICSNVFFFWLL 472
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.333 0.145 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,538
Number of Sequences: 36976
Number of extensions: 44528
Number of successful extensions: 671
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of query: 90
length of database: 9,014,727
effective HSP length: 66
effective length of query: 24
effective length of database: 6,574,311
effective search space: 157783464
effective search space used: 157783464
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0206b.6