BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.1
(35 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78629 similar to GP|13486733|dbj|BAB39968. putative peptidyl-p... 60 2e-10
TC80180 similar to GP|13278483|gb|AAH04041.1 Similar to peptidyl... 58 9e-10
BG452363 similar to PIR|T07950|T07 peptidylprolyl isomerase (EC ... 55 6e-09
AL381531 homologue to GP|8843791|dbj| cyclophilin {Arabidopsis t... 54 1e-08
TC85522 similar to PIR|T02489|T02489 peptidylprolyl isomerase (E... 54 1e-08
TC79130 similar to GP|1305457|gb|AAB96833.1| cytosolic cyclophil... 54 1e-08
TC76308 similar to PIR|S54833|S54833 peptidylprolyl isomerase (E... 54 1e-08
AW981464 similar to GP|18376589|em putative cyclosporin A-bindin... 53 2e-08
TC79566 similar to GP|16323328|gb|AAL15377.1 AT5g13120/T19L5_80 ... 52 4e-08
TC88247 similar to GP|18146786|dbj|BAB82452. CYP1 {Vigna radiata... 52 5e-08
TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophyli... 52 5e-08
TC78290 similar to PIR|F84808|F84808 probable peptidyl-prolyl ci... 51 1e-07
TC81942 similar to SP|P34790|CYP1_ARATH Peptidyl-prolyl cis-tran... 50 1e-07
TC78721 similar to GP|15076665|dbj|BAB62328. cyclophilin {Oryza ... 50 3e-07
TC84618 similar to GP|13442983|gb|AAK02067.1 cyclophilin-40 {Ara... 48 7e-07
TC88504 similar to GP|13442983|gb|AAK02067.1 cyclophilin-40 {Ara... 48 1e-06
TC81794 homologue to PIR|C86151|C86151 hypothetical protein AAF7... 46 4e-06
TC90442 similar to PIR|T05766|T05766 peptidylprolyl isomerase (E... 44 1e-05
BQ135856 similar to GP|3063396|dbj| vcCyP {Vicia faba}, partial ... 33 0.032
TC93698 similar to GP|20259449|gb|AAM13845.1 unknown protein {Ar... 29 0.36
>TC78629 similar to GP|13486733|dbj|BAB39968. putative peptidyl-prolyl
cis-trans isomerase chloroplast precursor, partial
(74%)
Length = 1050
Score = 59.7 bits (143), Expect = 2e-10
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI TV
Sbjct: 599 FALKHVGPGVLSMANAGPNTNGSQFFICTV 688
>TC80180 similar to GP|13278483|gb|AAH04041.1 Similar to peptidylprolyl
isomerase F (cyclophilin F) {Mus musculus}, partial
(70%)
Length = 642
Score = 57.8 bits (138), Expect = 9e-10
Identities = 25/30 (83%), Positives = 27/30 (89%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 256 FTLKHTGPGILSMANAGPNTNGSQFFICTV 345
>BG452363 similar to PIR|T07950|T07 peptidylprolyl isomerase (EC 5.2.1.8) 1 -
Chlamydomonas reinhardtii, partial (88%)
Length = 586
Score = 55.1 bits (131), Expect = 6e-09
Identities = 23/30 (76%), Positives = 27/30 (89%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGP+TNGSQFF+ TV
Sbjct: 230 FTLKHTGPGILSMANAGPHTNGSQFFLCTV 319
>AL381531 homologue to GP|8843791|dbj| cyclophilin {Arabidopsis thaliana},
partial (39%)
Length = 527
Score = 54.3 bits (129), Expect = 1e-08
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMANAGP+TNGSQFFI+TV
Sbjct: 232 FKLKHTGPGFLSMANAGPDTNGSQFFITTV 143
>TC85522 similar to PIR|T02489|T02489 peptidylprolyl isomerase (EC 5.2.1.8)
F23F1.12 - Arabidopsis thaliana, partial (98%)
Length = 1051
Score = 54.3 bits (129), Expect = 1e-08
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMANAGP+TNGSQFFI+TV
Sbjct: 445 FKLKHTGPGFLSMANAGPDTNGSQFFITTV 534
>TC79130 similar to GP|1305457|gb|AAB96833.1| cytosolic cyclophilin
{Arabidopsis thaliana}, partial (96%)
Length = 738
Score = 54.3 bits (129), Expect = 1e-08
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F +KH GPG+LSMAN+GPNTNGSQFFI T
Sbjct: 336 FKLKHTGPGILSMANSGPNTNGSQFFICT 422
>TC76308 similar to PIR|S54833|S54833 peptidylprolyl isomerase (EC 5.2.1.8)
Cyp - kidney bean, complete
Length = 917
Score = 53.9 bits (128), Expect = 1e-08
Identities = 23/29 (79%), Positives = 25/29 (85%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F+ KH GPG+LSMANAGP TNGSQFFI T
Sbjct: 338 FIKKHTGPGILSMANAGPGTNGSQFFICT 424
>AW981464 similar to GP|18376589|em putative cyclosporin A-binding protein
{Picea abies}, complete
Length = 692
Score = 53.1 bits (126), Expect = 2e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F ++H GPG+LSMANAGP TNGSQFFI TV
Sbjct: 299 FNLRHTGPGILSMANAGPGTNGSQFFICTV 388
>TC79566 similar to GP|16323328|gb|AAL15377.1 AT5g13120/T19L5_80
{Arabidopsis thaliana}, partial (66%)
Length = 1149
Score = 52.4 bits (124), Expect = 4e-08
Identities = 23/30 (76%), Positives = 25/30 (82%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F + H GPG +SMANAGPNTNGSQFFI TV
Sbjct: 596 FNLSHTGPGAVSMANAGPNTNGSQFFICTV 685
>TC88247 similar to GP|18146786|dbj|BAB82452. CYP1 {Vigna radiata}, complete
Length = 786
Score = 52.0 bits (123), Expect = 5e-08
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F+ H GPGVLSMANAGP TNGSQFFI T
Sbjct: 363 FIKTHTGPGVLSMANAGPGTNGSQFFICT 449
>TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophylin protein
{Arabidopsis thaliana}, partial (30%)
Length = 1125
Score = 52.0 bits (123), Expect = 5e-08
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFI 32
F +KH GPGVLSMAN+GPNTNGSQFFI
Sbjct: 611 FKLKHDGPGVLSMANSGPNTNGSQFFI 691
>TC78290 similar to PIR|F84808|F84808 probable peptidyl-prolyl cis-trans
isomerase [imported] - Arabidopsis thaliana, partial
(90%)
Length = 1241
Score = 50.8 bits (120), Expect = 1e-07
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIS 33
F KH GPG+LSMAN+GPNTNG QFFI+
Sbjct: 403 FTAKHTGPGLLSMANSGPNTNGCQFFIT 486
>TC81942 similar to SP|P34790|CYP1_ARATH Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase)
(Cyclophilin), partial (53%)
Length = 449
Score = 50.4 bits (119), Expect = 1e-07
Identities = 23/30 (76%), Positives = 25/30 (82%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMAN+G NTNGSQFFI TV
Sbjct: 46 FNLKHEGPGTLSMANSGANTNGSQFFICTV 135
>TC78721 similar to GP|15076665|dbj|BAB62328. cyclophilin {Oryza sativa
(japonica cultivar-group)}, complete
Length = 764
Score = 49.7 bits (117), Expect = 3e-07
Identities = 21/26 (80%), Positives = 24/26 (91%)
Frame = +2
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH G G+LSMANAGPNTNGSQFFI+
Sbjct: 293 LKHTGAGILSMANAGPNTNGSQFFIT 370
>TC84618 similar to GP|13442983|gb|AAK02067.1 cyclophilin-40 {Arabidopsis
thaliana}, partial (84%)
Length = 984
Score = 48.1 bits (113), Expect = 7e-07
Identities = 22/29 (75%), Positives = 24/29 (81%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F +KH G+LSMAN GPNTNGSQFFIST
Sbjct: 321 FEMKHERKGMLSMANTGPNTNGSQFFIST 407
>TC88504 similar to GP|13442983|gb|AAK02067.1 cyclophilin-40 {Arabidopsis
thaliana}, partial (94%)
Length = 1460
Score = 47.8 bits (112), Expect = 1e-06
Identities = 21/29 (72%), Positives = 25/29 (85%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F +KH G+LSMAN+GPNTNGSQFFI+T
Sbjct: 413 FDLKHERKGILSMANSGPNTNGSQFFITT 499
>TC81794 homologue to PIR|C86151|C86151 hypothetical protein AAF76472.1
[imported] - Arabidopsis thaliana, complete
Length = 826
Score = 45.8 bits (107), Expect = 4e-06
Identities = 20/26 (76%), Positives = 23/26 (87%)
Frame = +1
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH G+LSMAN+GPNTNGSQFFIS
Sbjct: 358 LKHNARGILSMANSGPNTNGSQFFIS 435
>TC90442 similar to PIR|T05766|T05766 peptidylprolyl isomerase (EC 5.2.1.8)
M4E13.20 - Arabidopsis thaliana, partial (80%)
Length = 1181
Score = 44.3 bits (103), Expect = 1e-05
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GV+SMAN+GP++NGSQFF +TV
Sbjct: 595 FRIKHSHAGVVSMANSGPDSNGSQFFFTTV 684
>BQ135856 similar to GP|3063396|dbj| vcCyP {Vicia faba}, partial (50%)
Length = 796
Score = 32.7 bits (73), Expect = 0.032
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = +1
Query: 10 HVGPGVLSMANAGPNTN 26
H GPG+LSMANAG TN
Sbjct: 349 HTGPGILSMANAGAGTN 399
>TC93698 similar to GP|20259449|gb|AAM13845.1 unknown protein {Arabidopsis
thaliana}, partial (18%)
Length = 470
Score = 29.3 bits (64), Expect = 0.36
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +1
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH PG+LSMA A +T GS F I+
Sbjct: 310 LKHDSPGLLSMAIADRDTLGSHFIIT 387
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 921,795
Number of Sequences: 36976
Number of extensions: 5112
Number of successful extensions: 40
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 35
length of database: 9,014,727
effective HSP length: 11
effective length of query: 24
effective length of database: 8,607,991
effective search space: 206591784
effective search space used: 206591784
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0206b.1