BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0200.6
(398 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77629 similar to GP|6648962|gb|AAF21309.1| seed maturation pro... 533 e-152
TC79471 similar to GP|21536629|gb|AAM60961.1 seed maturation-lik... 172 2e-43
TC89581 similar to PIR|B96661|B96661 unknown protein 83181-8510... 70 2e-12
BQ143793 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 38 0.008
AL389254 weakly similar to GP|7523514|dbj| Similar to Arabidopsi... 34 0.11
BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 34 0.11
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati... 33 0.19
AW697042 similar to GP|13122418|dbj putative glycin-rich protein... 32 0.33
TC86781 similar to GP|17064894|gb|AAL32601.1 Unknown protein {Ar... 32 0.33
TC89483 similar to GP|18377662|gb|AAL66981.1 unknown protein {Ar... 32 0.33
TC78352 homologue to PIR|T14086|T14086 hypothetical protein F9N1... 32 0.43
TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk p... 32 0.43
TC92479 similar to GP|9759160|dbj|BAB09716.1 contains similarity... 32 0.43
BQ144460 weakly similar to SP|P78621|SEPA Cytokinesis protein se... 27 0.72
TC85977 similar to GP|10176918|dbj|BAB10162. auxin response fact... 31 0.74
TC79049 weakly similar to PIR|T10798|T10798 pherophorin-S - Volv... 31 0.74
TC93591 similar to PIR|T05209|T05209 hypothetical protein F24J7.... 31 0.74
TC90194 similar to GP|19570030|gb|AAL92326.1 hypothetical protei... 31 0.74
TC88061 homologue to SP|Q43117|KPYA_RICCO Pyruvate kinase isozym... 30 1.3
TC92385 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 30 1.3
>TC77629 similar to GP|6648962|gb|AAF21309.1| seed maturation protein PM23
{Glycine max}, partial (76%)
Length = 1741
Score = 533 bits (1374), Expect = e-152
Identities = 289/407 (71%), Positives = 329/407 (80%), Gaps = 10/407 (2%)
Frame = +3
Query: 2 PSKIPNRQREEREGKSGCIGGCSSWQPPFPSSPLFLFLFSTSA----LHPPHPSLSLLSA 57
P + R+REE+ G + +Q + P L S+S+ LH PS S +
Sbjct: 12 PKEKGRRRREEKRKVLGFV--VVDFQFYMATLPSILSFSSSSSSSLPLHRFRPSPSFSFS 185
Query: 58 TTQTLQNRNPLSWFLLPQPPPSGISPPNPR----ELIQEIEPLDVSHIQKDVPPTTADAM 113
++ ++P + +L + + ELIQEIEPLDVS+IQKDVPPTTADAM
Sbjct: 186 PLRSNPTKSPSPFLVLASSSHDSNDFTSKKSALSELIQEIEPLDVSNIQKDVPPTTADAM 365
Query: 114 KRTISGMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKNLDMCERD 173
KRTISGMLGLLPSDQF+VV+EALWEPLSKLLISSMMTGYTLRNAEYRLCLEK LD+C+RD
Sbjct: 366 KRTISGMLGLLPSDQFNVVVEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKTLDICDRD 545
Query: 174 LEKPKAESTPMDLQGLLHDSVNVIDFGRKSNLSSKVEKVHEDVDIQDLGEISSEAQQYIL 233
LEKPKAEST DLQ L DSVNVIDFGR +NLSSKVEK HEDV+IQDLG+IS+EAQ+YI
Sbjct: 546 LEKPKAESTKFDLQDFLRDSVNVIDFGRNNNLSSKVEKPHEDVNIQDLGQISAEAQEYIS 725
Query: 234 NLQSRLSSMKKELHEVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELK 293
+LQSRLSS+KKEL EVKRK+AALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELK
Sbjct: 726 SLQSRLSSIKKELREVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELK 905
Query: 294 EIIISVVHGLLATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTR 353
+II+SVVHGLLATLSPKMHSKPST SENAT+G+ANAG+EDCAEVVENSS++F P ISLTR
Sbjct: 906 DIILSVVHGLLATLSPKMHSKPSTTSENATVGSANAGNEDCAEVVENSSLKFQPFISLTR 1085
Query: 354 DYLARLLFWCMLLGHYLRGLEYRVDLTELLSLTSDAENNG--NEQIA 398
DYLARLLFWCMLLGHYLRGLEYR++L ELLSLT+ AEN NEQIA
Sbjct: 1086DYLARLLFWCMLLGHYLRGLEYRMELAELLSLTNVAENGASENEQIA 1226
>TC79471 similar to GP|21536629|gb|AAM60961.1 seed maturation-like protein
{Arabidopsis thaliana}, partial (50%)
Length = 1464
Score = 172 bits (436), Expect(2) = 2e-43
Identities = 115/318 (36%), Positives = 177/318 (55%), Gaps = 20/318 (6%)
Frame = +3
Query: 88 ELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLISS 147
++++ I+PLD S I K V + D+MK+TIS MLGLLPSD F V + +PL +LL+SS
Sbjct: 306 KMLRRIKPLDNSVISKGVSEASKDSMKQTISTMLGLLPSDHFDVTVSFEIQPLHRLLVSS 485
Query: 148 MMTGYTLRNAEYRLCLEKNLDM--------CERDLEKPKAESTPMDLQGLLHDSVNVIDF 199
++TGYTL NAEYR+ L +NL+M CE LE ++L+G
Sbjct: 486 IITGYTLWNAEYRMSLTRNLEMSHADQGADCETPLES-------LELKG----------- 611
Query: 200 GRKSNLSSKVEKVHEDVDIQD------------LGEISSEAQQYILNLQSRLSSMKKELH 247
G + + + EKV D+ + + G++ +A +YI LQS L++MK+EL+
Sbjct: 612 GEEEH--GETEKVVSDLGLANSEICSSSTGAGVFGDLPPQALKYIQQLQSELTNMKEELN 785
Query: 248 EVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEIIISVVHGLLATL 307
K++ L+ + + +N+LL+YLRS P+ V ++S +S E+++II +V +L
Sbjct: 786 AQKQEMMQLEHDRGI---RNNLLEYLRSFDPDMVTEMSRPSSEEVEDIIHQLVQNILRRF 956
Query: 308 SPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLARLLFWCMLLG 367
+ S E + G + G E F I+ +RDYLA+LLFWCMLLG
Sbjct: 957 --LVDEASSNFMEQSVEGNIDDGDE------------FSDKIATSRDYLAKLLFWCMLLG 1094
Query: 368 HYLRGLEYRVDLTELLSL 385
H+LRGLE R+ L+ ++ L
Sbjct: 1095HHLRGLENRLHLSCVVGL 1148
Score = 21.6 bits (44), Expect(2) = 2e-43
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +2
Query: 66 NPLSWFLLPQPPPSGIS 82
+PLS P PPPS +S
Sbjct: 167 SPLSLLPPPSPPPSTLS 217
>TC89581 similar to PIR|B96661|B96661 unknown protein 83181-85105
[imported] - Arabidopsis thaliana, partial (35%)
Length = 716
Score = 69.7 bits (169), Expect = 2e-12
Identities = 36/95 (37%), Positives = 58/95 (60%), Gaps = 4/95 (4%)
Frame = +3
Query: 78 PSGISPPNPRELIQE----IEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVI 133
P+G + RE++ E ++P + K PP DAM++T++ M+G LP F + I
Sbjct: 306 PNGTLSKSRREILLEYVKTVQPEFMELFVKRAPPPVVDAMRQTVTNMIGTLPPQFFSITI 485
Query: 134 EALWEPLSKLLISSMMTGYTLRNAEYRLCLEKNLD 168
+ E L++L+ S MMTGY RNA+YRL L+++L+
Sbjct: 486 ATVAENLAQLMYSVMMTGYMFRNAQYRLELQESLE 590
Score = 39.3 bits (90), Expect = 0.003
Identities = 36/149 (24%), Positives = 62/149 (41%)
Frame = +3
Query: 235 LQSRLSSMKKELHEVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKE 294
L R+ + K + E K N L + + LL+Y++++QPE + + P + +
Sbjct: 255 LSFRIQASKNDAGESKSPNGTLSKSR-----REILLEYVKTVQPEFMELFVKRAPPPVVD 419
Query: 295 IIISVVHGLLATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRD 354
+ V ++ TL P+ S TI T V EN
Sbjct: 420 AMRQTVTNMIGTLPPQFFS--------ITIAT----------VAEN-------------- 503
Query: 355 YLARLLFWCMLLGHYLRGLEYRVDLTELL 383
LA+L++ M+ G+ R +YR++L E L
Sbjct: 504 -LAQLMYSVMMTGYMFRNAQYRLELQESL 587
>BQ143793 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (19%)
Length = 1100
Score = 37.7 bits (86), Expect = 0.008
Identities = 32/92 (34%), Positives = 37/92 (39%), Gaps = 14/92 (15%)
Frame = +2
Query: 29 PFPSSPLFLFLFSTSALHPPH--------------PSLSLLSATTQTLQNRNPLSWFLLP 74
PFPS PLF F F L PP+ PS LS +L R PLS F P
Sbjct: 302 PFPSHPLFFFSFFPPPLPPPYTPLHISHFPLPSSSPSSPFLSPPFPSL--RFPLSSFSFP 475
Query: 75 QPPPSGISPPNPRELIQEIEPLDVSHIQKDVP 106
S + PP P L PL + H+ P
Sbjct: 476 SSFLS-LVPPLPLPLFPFTLPLSLPHLSSFAP 568
Score = 29.3 bits (64), Expect = 2.8
Identities = 27/65 (41%), Positives = 32/65 (48%), Gaps = 8/65 (12%)
Frame = +2
Query: 28 PPFPSSPLFLFLFSTSALHPP-HPS-LSLLSATTQTLQNRN-----PLSWFLLPQPPPSG 80
PPF SPLF L +S H P HPS L L + + TL P S ++ PPP
Sbjct: 29 PPFFPSPLFSSLPPSSPPHSP*HPSPLPLPPSLSPTLSYPPHLFPFPFSLKIIYPPPPLP 208
Query: 81 I-SPP 84
I SPP
Sbjct: 209IPSPP 223
Score = 28.9 bits (63), Expect = 3.6
Identities = 22/72 (30%), Positives = 29/72 (39%), Gaps = 14/72 (19%)
Frame = +1
Query: 29 PFPSSPLFLF--LFSTSALHPPHPSLSLLSATTQTLQNRNPL------------SWFLLP 74
P PSSPLF F S L PP ++ + + L P+ L P
Sbjct: 16 PSPSSPLFSLSSFFLPSPLLPPPFPITSIPPSPPPLPFPYPILSPPSFSFSFLFKDHLSP 195
Query: 75 QPPPSGISPPNP 86
PPP + PP+P
Sbjct: 196PPPPHSLPPPSP 231
>AL389254 weakly similar to GP|7523514|dbj| Similar to Arabidopsis thaliana
chromosome II BAC F19I3 genomic sequence; putative RING3
protein, partial (18%)
Length = 491
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/96 (27%), Positives = 48/96 (49%), Gaps = 3/96 (3%)
Frame = +3
Query: 165 KNLDMCERDLEKPKAESTPMDLQGLLHDSVN-VIDFGRKSNL--SSKVEKVHEDVDIQDL 221
K D +RD+ + + LQ L + ++ V+ RK NL + + +++ D D D
Sbjct: 180 KAKDPNKRDMTYDEKQKLSTSLQSLPVEKLDAVVQMMRKKNLELNQQDDEIEVDFDAVD- 356
Query: 222 GEISSEAQQYILNLQSRLSSMKKELHEVKRKNAALQ 257
EI E +++LN + LS K++ + + + ALQ
Sbjct: 357 AEILWELDRFVLNYKKSLSKNKRKGEQARERAEALQ 464
>BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (10%)
Length = 1067
Score = 33.9 bits (76), Expect = 0.11
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
Frame = -1
Query: 41 STSALHPPHPSLSLLSATTQTLQNRNPLS--WFLLPQPPPSGISPPNPRELIQEIEPLDV 98
STS + PPHP S +++ ++ PL+ WF P P PP R + PL +
Sbjct: 332 STSLVPPPHPG-SPSGGSSRLPRSSPPLAGLWFAFSTPYPPPAPPPRARFRRSDSSPLPL 156
Query: 99 SHIQKDVPP 107
S +PP
Sbjct: 155 SAPLPSLPP 129
>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
1 {Arabidopsis thaliana}, partial (37%)
Length = 1760
Score = 33.1 bits (74), Expect = 0.19
Identities = 21/81 (25%), Positives = 37/81 (44%)
Frame = -3
Query: 17 SGCIGGCSSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQP 76
S C G SW F FS+ A + SL L++TT + + ++W
Sbjct: 966 SSCSEG-GSWTSDFLFFTAVFLTFSSVAARNFNSSLDFLNSTTLNWRPISLVNWLSTELS 790
Query: 77 PPSGISPPNPRELIQEIEPLD 97
G+ PP+P+ ++ ++PL+
Sbjct: 789 FLEGVFPPSPQFMLLSLDPLN 727
>AW697042 similar to GP|13122418|dbj putative glycin-rich protein {Oryza
sativa (japonica cultivar-group)}, partial (11%)
Length = 730
Score = 32.3 bits (72), Expect = 0.33
Identities = 30/92 (32%), Positives = 35/92 (37%), Gaps = 15/92 (16%)
Frame = -1
Query: 24 SSWQPPFPSSPLFLFLF------------STSALHPPHPSLSLLSATTQTLQNRNPLSWF 71
S P PS+PL S SA PPHP L L + S
Sbjct: 691 SPHSPSLPSTPLLSHHLLSPL*APTPTHTSPSASSPPHPLLC*LPVPRAVPYSSYSSS-- 518
Query: 72 LLPQPPPSGIS---PPNPRELIQEIEPLDVSH 100
LP PPP+ S PPN L++ I P SH
Sbjct: 517 CLPTPPPTTPSTPHPPNRSLLLKPISPKSQSH 422
>TC86781 similar to GP|17064894|gb|AAL32601.1 Unknown protein {Arabidopsis
thaliana}, partial (67%)
Length = 2444
Score = 32.3 bits (72), Expect = 0.33
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2
Query: 41 STSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPNPRELIQEIEPLDVSH 100
S S+LHP HP + TQ L+ L P+PPP +SPP+ L+ I P+ S
Sbjct: 149 SVSSLHPHHPIVLNPVHPTQ-------LTLHLYPKPPPPLLSPPS-*SLLHVISPIISSS 304
Query: 101 I 101
I
Sbjct: 305 I 307
>TC89483 similar to GP|18377662|gb|AAL66981.1 unknown protein {Arabidopsis
thaliana}, partial (35%)
Length = 1711
Score = 32.3 bits (72), Expect = 0.33
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = +2
Query: 243 KKELHEVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQV 281
K +LH+ R + ++++F+GEE+N L DY+ S E V
Sbjct: 1304 KHQLHQRMRPWISKKIKEFLGEEENTLTDYIVSSTQEHV 1420
>TC78352 homologue to PIR|T14086|T14086 hypothetical protein F9N11.110 -
Arabidopsis thaliana, partial (65%)
Length = 1179
Score = 32.0 bits (71), Expect = 0.43
Identities = 24/59 (40%), Positives = 29/59 (48%)
Frame = +1
Query: 32 SSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPNPRELI 90
S P+FL L HPP+P LS LS L + L LLP P ISPP +L+
Sbjct: 280 SIPIFLIL------HPPNPLLSPLSQNPLLLLSLLFLLLLLLPDP----ISPPPDSDLL 426
>TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk protein
{Argiope trifasciata}, partial (3%)
Length = 1177
Score = 32.0 bits (71), Expect = 0.43
Identities = 29/113 (25%), Positives = 38/113 (32%), Gaps = 11/113 (9%)
Frame = +3
Query: 2 PSKIPNRQREEREGKSGCIGGCSSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQT 61
P K P R R + P PSSP L+ PP PS S T
Sbjct: 207 PQKSPPRMRRSK---------------PSPSSPAATPLWPQRTTPPPSPSTPRPSP*TPA 341
Query: 62 LQNRNPLSWFLLPQP-----------PPSGISPPNPRELIQEIEPLDVSHIQK 103
+ +P + P P PPS +PP P+ + P S Q+
Sbjct: 342 TPSTSPTAPLPTPPPRTTLPPALTPRPPSPSTPPTPKPGPVSVSPASPSATQR 500
>TC92479 similar to GP|9759160|dbj|BAB09716.1 contains similarity to myosin
heavy chain~gene_id:MEE6.21 {Arabidopsis thaliana},
partial (4%)
Length = 844
Score = 32.0 bits (71), Expect = 0.43
Identities = 24/97 (24%), Positives = 47/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 205 LSSKVEK------VHEDVDIQDLGEISSEAQQYILNLQSRLSSMKKELHEVKRKNAALQM 258
L +KVE+ +HED I+ EIS + + + + + LS + EL +K +N +++
Sbjct: 308 LENKVEEFNQNVTLHEDRSIKSSNEISEKVRNRLEHADNSLSGVLTELSSLKERNKSMES 487
Query: 259 QQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEI 295
+ +E+ + L+ + E Q+ T LK +
Sbjct: 488 ELKEMQERYSEMS-LKFAEVEGERQILVMTVRNLKSV 595
>BQ144460 weakly similar to SP|P78621|SEPA Cytokinesis protein sepA (FH1/2
protein) (Forced expression inhibition of growth A).,
partial (2%)
Length = 1201
Score = 26.6 bits (57), Expect(2) = 0.72
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 67 PLSWFLLP-QPPPSGISPPN 85
PL W LP PPP G PPN
Sbjct: 111 PLLWLPLPAPPPPPGEPPPN 170
Score = 23.1 bits (48), Expect(2) = 0.72
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 28 PPFPSSPLFLFLFSTSALHPP 48
PP P PLF F F HPP
Sbjct: 5 PPLP--PLFPFSFHLPPRHPP 61
>TC85977 similar to GP|10176918|dbj|BAB10162. auxin response factor-like
protein {Arabidopsis thaliana}, partial (65%)
Length = 3162
Score = 31.2 bits (69), Expect = 0.74
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 66 NPLSWFLLPQPPPSGISPPNPRELIQEIEPLDVSHIQK 103
NP FL+P PPP+ P+ REL Q+ +S K
Sbjct: 1868 NPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISEAAK 1981
>TC79049 weakly similar to PIR|T10798|T10798 pherophorin-S - Volvox carteri,
partial (6%)
Length = 957
Score = 31.2 bits (69), Expect = 0.74
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 28 PPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPN 85
P FPSS + F FS + PH LS ++T L + P + P PPS PP+
Sbjct: 757 PQFPSSQVHQF-FSPNPSPSPHSPLS--PSSTLPLPSPTPRPYPPCPSKPPSNPQPPS 921
>TC93591 similar to PIR|T05209|T05209 hypothetical protein F24J7.50 -
Arabidopsis thaliana, partial (12%)
Length = 688
Score = 31.2 bits (69), Expect = 0.74
Identities = 45/167 (26%), Positives = 68/167 (39%), Gaps = 6/167 (3%)
Frame = +1
Query: 1 MPSKIPNRQREEREGKSGCIGGCSSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQ 60
+P + NR+ E+ + I S+ QPP PL T P +LSL S+TT
Sbjct: 76 IPHLLNNRRGEDHQPFPPPI---STAQPPHLHQPLPHHSPKTL----PQSNLSLPSSTTL 234
Query: 61 TLQNRNPLSWFLLPQPPPSGISPPNPRELIQEIEPLDVSHIQKDVPPTTADAMKRTISGM 120
+L ++P LP P S PPNP L + S + +P T + T++
Sbjct: 235 SLPPQSP-----LPNSPLS--PPPNPPPLSPDPISFHTS-LPSPIPSTASTKSANTLTTR 390
Query: 121 LGLLPS------DQFHVVIEALWEPLSKLLISSMMTGYTLRNAEYRL 161
L P+ V ++ L L+K+ IS + R RL
Sbjct: 391 SQLSPTTAVPEKHSSRVSVKFLRYTLNKIFISKKALRFVRRVRFLRL 531
>TC90194 similar to GP|19570030|gb|AAL92326.1 hypothetical protein
{Dictyostelium discoideum}, partial (3%)
Length = 775
Score = 31.2 bits (69), Expect = 0.74
Identities = 22/65 (33%), Positives = 29/65 (43%)
Frame = +1
Query: 21 GGCSSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSG 80
GG S++ PP P+ FL PHPS S+TTQ +P + P P +G
Sbjct: 238 GGGSNFPPPQPNGGDFLLSLLQKPRPNPHPS---QSSTTQQSPIIDPAVAMMGPTIPTNG 408
Query: 81 ISPPN 85
PN
Sbjct: 409 HDHPN 423
>TC88061 homologue to SP|Q43117|KPYA_RICCO Pyruvate kinase isozyme A
chloroplast precursor (EC 2.7.1.40). [Castor bean]
{Ricinus communis}, partial (84%)
Length = 1765
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/63 (36%), Positives = 29/63 (45%), Gaps = 5/63 (7%)
Frame = +2
Query: 31 PSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQP-----PPSGISPPN 85
P+ PLFL S S HPP P+L + P+S LLP P P + P N
Sbjct: 71 PTKPLFLHHVSYS--HPPLPTLHPPNHKLPLPHPPLPISHPLLPTPPLPHSPRLNLPPNN 244
Query: 86 PRE 88
PR+
Sbjct: 245 PRQ 253
>TC92385 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (10%)
Length = 775
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/85 (31%), Positives = 32/85 (36%), Gaps = 11/85 (12%)
Frame = +3
Query: 27 QPPFPSSPLFLFLFSTSALHP-------PH----PSLSLLSATTQTLQNRNPLSWFLLPQ 75
Q P P S L +FL S H PH PSL L L R P + L
Sbjct: 156 QHPSPHSLLLMFLSHNSTSHSHSQSQ*SPHSLLLPSLLHLPFLNPPLLRRTPPPFLLHLF 335
Query: 76 PPPSGISPPNPRELIQEIEPLDVSH 100
PPP P+P L P ++H
Sbjct: 336 PPPHRPPSPSPPSLPWLHSPQSLTH 410
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,800,054
Number of Sequences: 36976
Number of extensions: 226695
Number of successful extensions: 1803
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of query: 398
length of database: 9,014,727
effective HSP length: 98
effective length of query: 300
effective length of database: 5,391,079
effective search space: 1617323700
effective search space used: 1617323700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0200.6