TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77403 similar to SP|Q9SDS7|VATC_ARATH Vacuolar ATP synthase su...    70  2e-13
CA859217 weakly similar to GP|23326466|gb| narrowly conserved hy...    27  2.1
BQ135608 similar to GP|4325337|gb|A F15P23.3 gene product {Arabi...    26  3.6
CA991032 weakly similar to GP|21592868|gb| unknown {Arabidopsis ...    26  3.6
BG452325 similar to GP|9294439|dbj gene_id:MMB12.21~unknown prot...    26  3.6
BQ141547                                                               25  4.7
TC89958 similar to GP|12483623|dbj|BAB21445. NADH dehydrogenase ...    25  8.0
TC85981 similar to SP|Q00763|COMT_POPTM Caffeic acid 3-O-methylt...    25  8.0

>TC77403 similar to SP|Q9SDS7|VATC_ARATH Vacuolar ATP synthase subunit C (EC
           3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C
           subunit)., partial (98%)
          Length = 1783

 Score = 70.1 bits (170), Expect = 2e-13
 Identities = 31/40 (77%), Positives = 37/40 (92%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   WWVVSLPV--HNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
           +WVVSLPV  +NS+S +WN+LQQN+SKHSFDTPLYRFNIP
Sbjct: 62  YWVVSLPVQNNNSSSSIWNQLQQNISKHSFDTPLYRFNIP 181


>CA859217 weakly similar to GP|23326466|gb| narrowly conserved hypothetical
           protein {Bifidobacterium longum NCC2705}, partial (5%)
          Length = 766

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 3   VVWWVVSLPVHNSASELWNRLQQNV 27
           V+ +V S+P+ +S+S +W+ L  NV
Sbjct: 728 VLMYVYSIPLFSSSSRIWSLLSTNV 654


>BQ135608 similar to GP|4325337|gb|A F15P23.3 gene product {Arabidopsis
           thaliana}, partial (4%)
          Length = 759

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = +3

Query: 26  NVSKHSFDTPLYRFNIP 42
           +V K+ FDTP+YR  +P
Sbjct: 330 DVPKYYFDTPVYRLGLP 380


>CA991032 weakly similar to GP|21592868|gb| unknown {Arabidopsis thaliana},
          partial (19%)
          Length = 403

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 13 HNSASELWNRLQQNVSKHS---FDTPL 36
          HNS  EL   L QN+S+H    +DTP+
Sbjct: 85 HNSHQELL*LLDQNMSQHEEHPYDTPI 5


>BG452325 similar to GP|9294439|dbj gene_id:MMB12.21~unknown protein
           {Arabidopsis thaliana}, partial (25%)
          Length = 666

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +2

Query: 5   WWVVSLPVHNSASELWNRLQQNVSKHSF 32
           WW  + P H S+ E+W  L+ +    SF
Sbjct: 239 WWHQNPPAHYSSHEIWPTLRVSFLLSSF 322


>BQ141547 
          Length = 849

 Score = 25.4 bits (54), Expect = 4.7
 Identities = 8/26 (30%), Positives = 16/26 (60%)
 Frame = +1

Query: 19  LWNRLQQNVSKHSFDTPLYRFNIPIS 44
           LW++  +N + HSF  P++ F   ++
Sbjct: 277 LWDKTTRNAATHSFPPPIHVFTFQMT 354


>TC89958 similar to GP|12483623|dbj|BAB21445. NADH dehydrogenase subunit 4L
           {Gonostoma gracile}, partial (17%)
          Length = 1040

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 17/48 (35%), Positives = 25/48 (51%)
 Frame = -1

Query: 2   AVVWWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP* 49
           A +WW++SL +  SAS+  + +  NV   S    L R N P+    P*
Sbjct: 737 AEMWWLISLDLTKSASQQSDCVTTNVPA*SH---LRRGNQPLHSYIP* 603


>TC85981 similar to SP|Q00763|COMT_POPTM Caffeic acid 3-O-methyltransferase
           (EC 2.1.1.68), partial (93%)
          Length = 1389

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 13  HNSASELWNRLQQNVSKHSFDTPLYR 38
           H + S+ W++    + KH F  P Y+
Sbjct: 170 H*NYSQSWSKCSSFIFKHCFSNPFYK 247


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,051,588
Number of Sequences: 36976
Number of extensions: 22229
Number of successful extensions: 186
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of query: 56
length of database: 9,014,727
effective HSP length: 32
effective length of query: 24
effective length of database: 7,831,495
effective search space: 187955880
effective search space used: 187955880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)