BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.8
(105 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG586089 similar to GP|19225025|gb putative endonuclease {Oryza ... 110 1e-25
TC88151 similar to GP|19225025|gb|AAL86501.1 putative endonuclea... 70 1e-13
AW686312 similar to GP|8809583|dbj gene_id:MJP23.10~unknown prot... 23 0.59
TC86351 similar to GP|13430654|gb|AAK25949.1 putative ER lumen p... 26 2.1
TC80041 similar to GP|8778702|gb|AAF79710.1| T1N15.20 {Arabidops... 26 2.8
TC82646 weakly similar to GP|21553680|gb|AAM62773.1 unknown {Ara... 26 2.8
TC85427 chitinase 25 4.7
TC86090 similar to GP|13940211|emb|CAC37923. fructan 1-exohydrol... 25 6.1
TC83865 similar to GP|21626756|gb|AAF47231.2 CG3511-PA {Drosophi... 25 6.1
>BG586089 similar to GP|19225025|gb putative endonuclease {Oryza sativa
(japonica cultivar-group)}, partial (47%)
Length = 819
Score = 110 bits (274), Expect = 1e-25
Identities = 55/84 (65%), Positives = 63/84 (74%)
Frame = +1
Query: 2 YQILQYVESYQKENRFKSMSIVLCSDWNGSKLGHVYKFLRTQRFDSSYDTANKYIDSYAD 61
Y+ILQYVESYQ + + K M I+LC DWNGSK GHVYKFLR+Q F SSYDTA++Y D AD
Sbjct: 571 YKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTD--AD 744
Query: 62 LHK*VSHRNPRGNICGVDFICIFN 85
K VSHRN RGNIC FI + N
Sbjct: 745 ADKWVSHRNHRGNICAGGFIWLLN 816
>TC88151 similar to GP|19225025|gb|AAL86501.1 putative endonuclease {Oryza
sativa (japonica cultivar-group)}, partial (38%)
Length = 889
Score = 70.1 bits (170), Expect = 1e-13
Identities = 30/38 (78%), Positives = 32/38 (83%)
Frame = +1
Query: 2 YQILQYVESYQKENRFKSMSIVLCSDWNGSKLGHVYKF 39
YQIL+YVE YQKENR K M I+LC DWNGSK GHVYKF
Sbjct: 763 YQILKYVEQYQKENRLKPMPIILCGDWNGSKRGHVYKF 876
>AW686312 similar to GP|8809583|dbj gene_id:MJP23.10~unknown protein
{Arabidopsis thaliana}, partial (83%)
Length = 635
Score = 23.5 bits (49), Expect(2) = 0.59
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 22 IVLCSDWNG 30
I+LC DWNG
Sbjct: 608 IILCGDWNG 634
Score = 23.1 bits (48), Expect(2) = 0.59
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 6 QYVESYQKENRFKSM 20
QYVESYQ E + K +
Sbjct: 559 QYVESYQNEYKLKPL 603
>TC86351 similar to GP|13430654|gb|AAK25949.1 putative ER lumen protein
retaining receptor {Arabidopsis thaliana}, complete
Length = 1400
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -3
Query: 21 SIVLCSDWNGSKLGHVYKFLRTQR 44
S+ LC G+K+G +Y+F R R
Sbjct: 132 SLSLCWPMRGTKIGRIYRFERRDR 61
>TC80041 similar to GP|8778702|gb|AAF79710.1| T1N15.20 {Arabidopsis
thaliana}, partial (7%)
Length = 1621
Score = 25.8 bits (55), Expect = 2.8
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -3
Query: 35 HVYKFLRTQRFDSSYDTAN 53
HV K +R+ FD+SYDT N
Sbjct: 422 HVSKTVRSA*FDNSYDTRN 366
>TC82646 weakly similar to GP|21553680|gb|AAM62773.1 unknown {Arabidopsis
thaliana}, partial (34%)
Length = 689
Score = 25.8 bits (55), Expect = 2.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 47 SSYDTANKYIDSYADLHK*VSHRNPRGN 74
S+ DT N Y Y DLH +H++ N
Sbjct: 436 SN*DTGNSYTQYYLDLHNLHNHQSSNNN 353
>TC85427 chitinase
Length = 1090
Score = 25.0 bits (53), Expect = 4.7
Identities = 20/85 (23%), Positives = 41/85 (47%), Gaps = 12/85 (14%)
Frame = +2
Query: 3 QILQYVESYQKENRFKSMS-----IVLCSDWNGS--KLGHVYKFLRTQRFDS---SYDTA 52
Q+L+Y + K+N F ++ I+L S + + + + L +Q F S + +
Sbjct: 71 QVLEYYRPFSKQNSFLNLHASVFWILLSSPYKSTTFPISFIINLLSSQFFLSIPQNQSLS 250
Query: 53 NKYIDSYADLHK*V--SHRNPRGNI 75
+ ++ +AD + + + NPRG I
Sbjct: 251 SSFLYHHADFRENLDRQNNNPRGRI 325
>TC86090 similar to GP|13940211|emb|CAC37923. fructan 1-exohydrolase IIb
{Cichorium intybus}, partial (33%)
Length = 1357
Score = 24.6 bits (52), Expect = 6.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 36 VYKFLRTQRFDSSYDTANKYIDSYADLHK*VSHRNPRGNICGVDFICIFNP-NQALKPLK 94
+ K T F + T ID + K + G IC +++I I+NP N+ L +K
Sbjct: 815 ILKTCLTLEFSTDVSTPISTIDIH---RKKIRTFTNTGTICCIEWIRIYNPINKILTSVK 645
Query: 95 TSWA 98
S++
Sbjct: 644 NSFS 633
>TC83865 similar to GP|21626756|gb|AAF47231.2 CG3511-PA {Drosophila
melanogaster}, partial (11%)
Length = 509
Score = 24.6 bits (52), Expect = 6.1
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +2
Query: 74 NICGVDFICIFNPNQAL 90
+I G+DF+C+ N NQ L
Sbjct: 176 HIKGIDFLCLQNANQML 226
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.327 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,488,527
Number of Sequences: 36976
Number of extensions: 42539
Number of successful extensions: 274
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 105
length of database: 9,014,727
effective HSP length: 81
effective length of query: 24
effective length of database: 6,019,671
effective search space: 144472104
effective search space used: 144472104
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0199.8