TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.2
         (160 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP...    73  6e-14
BQ752332 weakly similar to GP|8778366|gb| F15O4.30 {Arabidopsis ...    43  6e-05
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ...    27  2.7
TC80489 similar to GP|9294341|dbj|BAB02238.1 contains similarity...    26  6.1
TC76630 homologue to GP|18033654|gb|AAL57201.1 putative nodule m...    26  6.1
TC78451 similar to GP|9279625|dbj|BAB01083.1 gb|AAF23830.1~gene_...    26  7.9

>TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP2-like
            transposon protein {Oryza sativa (japonica
            cultivar-group)}, partial (10%)
          Length = 2433

 Score = 72.8 bits (177), Expect = 6e-14
 Identities = 41/110 (37%), Positives = 65/110 (58%), Gaps = 1/110 (0%)
 Frame = +1

Query: 2    FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELD-YTIFQVP 60
            F+T + D R   QNSGVTL++ +   +S+KD+ P    ++++G I  I EL+ Y   +  
Sbjct: 1171 FHTMQ*DARRKTQNSGVTLVSLTASFASSKDENPRTEPVNFYGAINDIIELNYYGHCKFV 1350

Query: 61   VFGCRWVDNNNGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDP 110
            +F C W +    V  D+ G T V  N+  Y++D F++ASQ +Q F+V DP
Sbjct: 1351 LFRCDWYE----VEEDEYGLTCVYFNKKCYQDDAFVIASQVQQCFYVQDP 1488


>BQ752332 weakly similar to GP|8778366|gb| F15O4.30 {Arabidopsis thaliana},
           partial (6%)
          Length = 268

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 27/74 (36%), Positives = 40/74 (53%), Gaps = 5/74 (6%)
 Frame = -2

Query: 42  YFGVIELIWELDYT---IFQVPVFGCRWVDN--NNGVRIDDLGFTQVDLNRVGYKNDPFI 96
           ++G++  I E+++      +  +F C W D   N GVR    G   V+  R   K +PFI
Sbjct: 264 FYGILTEIIEVEFPGILKLKCVLFKCEWFDPVVNRGVRSIKFGVVDVNGGRRYNKFEPFI 85

Query: 97  LASQAEQVFFVTDP 110
           LASQA+QV F+  P
Sbjct: 84  LASQADQVSFLPYP 43


>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
            partial (61%)
          Length = 1288

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (50%)
 Frame = +3

Query: 112  DKKWSMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDD 154
            DKK    +  +K+N +KD  ++ Q   + ED+P K     + D
Sbjct: 984  DKKPVAAKKEDKMNVDKDGSDSDQSEEESEDEPSKTPQKKIKD 1112


>TC80489 similar to GP|9294341|dbj|BAB02238.1 contains similarity to unknown
            protein~gb|AAF01552.1~gene_id:T6J22.18 {Arabidopsis
            thaliana}, partial (68%)
          Length = 1399

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 13/53 (24%), Positives = 25/53 (46%)
 Frame = +3

Query: 88   VGYKNDPFILASQAEQVFFVTDPADKKWSMVQLSNKINDNKDYDENQQKSVDK 140
            + +K+   I   Q E+     D  DK    V  ++K+N+  +  E  + S+D+
Sbjct: 1008 IEFKDKARISTDQKEKSRSGVDKRDKSRKSVDRADKVNNGAEIPEKARNSIDR 1166


>TC76630 homologue to GP|18033654|gb|AAL57201.1 putative nodule membrane
            protein {Medicago sativa}, complete
          Length = 2605

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = -3

Query: 113  KKWSMVQLSNKINDNKDYDENQQKSVDKEDDPFKGI 148
            + WS +   N   D K  D+N+ KS+ + D  F  I
Sbjct: 2063 RSWSNINQCNAHLDAKICDDNKSKSLQEIDSTFSSI 1956


>TC78451 similar to GP|9279625|dbj|BAB01083.1
            gb|AAF23830.1~gene_id:MOJ10.9~strong similarity to
            unknown protein {Arabidopsis thaliana}, partial (88%)
          Length = 2452

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 27   ISSAKDKKPVHGSMSYFGVIE 47
            I++A  KKP H SM YFG  E
Sbjct: 1911 IANAAAKKPPHISMQYFGSSE 1849


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,609,862
Number of Sequences: 36976
Number of extensions: 58711
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of query: 160
length of database: 9,014,727
effective HSP length: 88
effective length of query: 72
effective length of database: 5,760,839
effective search space: 414780408
effective search space used: 414780408
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)