TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.8
         (242 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein...    50  6e-07
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    45  2e-05
TC80784 similar to PIR|T50352|T50352 ornithine--oxo-acid transam...    29  1.9
TC82071 weakly similar to PIR|T00411|T01608 hypothetical protein...    27  5.5
BQ143841                                                               27  9.3

>TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein T24M8.10 -
           Arabidopsis thaliana, partial (11%)
          Length = 701

 Score = 50.4 bits (119), Expect = 6e-07
 Identities = 34/85 (40%), Positives = 45/85 (52%)
 Frame = +3

Query: 2   QFFHDRVILTPTLKAVEMINTYMLGMIAAPEHEYLSSNSALRSYEHSEI*GEWFTT*FLN 61
           QF   R ILT T + V+ IN Y+L +I   E    S+N   RS  +     +     FL 
Sbjct: 453 QFLQSRAILTSTDEVVDQINDYVLKLIPGEERVIYSAN---RSEVNDVQAFDAIPPEFLQ 623

Query: 62  NTKS*GMSNHKLLLKVDIPIMLLRN 86
           + K+  + NHKL LKV  PIMLLR+
Sbjct: 624 SLKTSDLPNHKLTLKVGTPIMLLRD 698


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 24/54 (44%), Positives = 33/54 (60%)
 Frame = +3

Query: 95  NGTRLIVVELGERYIGATVITGTNANDKVHISIMDLVPSDPNFQLNSEEDSFQL 148
           +GTRLI+V LG+  I A VI GT+A +  +I  M+L+PS  N  +  E   F L
Sbjct: 27  HGTRLIIVSLGKNVICARVIGGTHAGEVSYIPRMNLIPSGANVSITFERCQFPL 188


>TC80784 similar to PIR|T50352|T50352 ornithine--oxo-acid transaminase (EC
           2.6.1.13) [imported] - fission yeast, partial (36%)
          Length = 1206

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 70  NHKLLLKVDIPIMLLRNIDQAAGLC 94
           N++ LL +D+PI L   I + +GLC
Sbjct: 946 NYRFLLLIDLPISLFSGIAKCSGLC 872


>TC82071 weakly similar to PIR|T00411|T01608 hypothetical protein At2g44820
           [imported] - Arabidopsis thaliana, partial (36%)
          Length = 764

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/45 (28%), Positives = 26/45 (56%), Gaps = 4/45 (8%)
 Frame = -3

Query: 201 SQANNRPVL*M*----CLRKFLEMFDVYNTISFIYFIFLLIYYYT 241
           ++ NN P+  +     C  +  E+ DV++ +  ++FIFLLI  ++
Sbjct: 297 TKGNNLPIFNLFALFPCHMRVAEVLDVFHNLPDVHFIFLLIVLFS 163


>BQ143841 
          Length = 562

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
 Frame = +2

Query: 214 LRKFLEMFDVYNTISFIYFIFLLIY--YYTI 242
           + K++    +Y  + FIY +F++IY  YY I
Sbjct: 317 IAKYIYYISIYLYVLFIYILFIIIYIVYYYI 409


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.341    0.150    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,952,070
Number of Sequences: 36976
Number of extensions: 84366
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of query: 242
length of database: 9,014,727
effective HSP length: 93
effective length of query: 149
effective length of database: 5,575,959
effective search space: 830817891
effective search space used: 830817891
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 57 (26.6 bits)