TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.5
         (317 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78095 weakly similar to PIR|G84776|G84776 hypothetical protein...    31  0.72
AW774713 weakly similar to PIR|A86340|A86 protein F2D10.24 [impo...    30  0.94
BQ137346 homologue to GP|15027095|em hypothetical protein LT.09 ...    30  1.6
BM814226 similar to GP|2094888|pdb|2 Cucumber Basic Protein  A B...    29  2.1
TC77555 similar to GP|20260474|gb|AAM13135.1 26S proteasome subu...    28  3.6

>TC78095 weakly similar to PIR|G84776|G84776 hypothetical protein At2g36090
            [imported] - Arabidopsis thaliana, partial (19%)
          Length = 1467

 Score = 30.8 bits (68), Expect = 0.72
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 192  GWVHNWLVGSLRMGTRWVVQINNVWLRSEQVCGDTQKAAKEDSWGASDASLQQVMVGEH 250
            G V  +LVG++  G RW V I+    R E+ CG  ++  +E            +MVG H
Sbjct: 996  GIVWGFLVGAMEKGERWKVDIDREKKRFEEFCG-RKRERREKKLRRERVMDMIIMVGCH 1169


>AW774713 weakly similar to PIR|A86340|A86 protein F2D10.24 [imported] -
           Arabidopsis thaliana, partial (4%)
          Length = 674

 Score = 30.4 bits (67), Expect = 0.94
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 77  STARKPETVVGESSSERDQYRPESDWN-RSSVSRKANIAREVSSPVAVEQV 126
           +T   PE+V+GE S+  +   P S W   S  S+K NI   +SS +A E++
Sbjct: 231 ATPSMPESVIGEKSTSSEALFPASSWYFTSKESKKNNI---LSSNLAFEEL 374


>BQ137346 homologue to GP|15027095|em hypothetical protein LT.09 {Leishmania
           major}, partial (0%)
          Length = 1101

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 29/120 (24%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
 Frame = +3

Query: 72  FSNGVSTARKPETVVGESSSERDQYRPESDWNRSSVSRKANIAREVSSPVAVEQVAGSKP 131
           FS      R+P    G ++++R    P +  NR    R      + + P    Q AG KP
Sbjct: 75  FSRQKEQKREPHRGGGRTTNQRS---PRAAGNRHEEGRPNTTKDKPAKP----QRAGPKP 233

Query: 132 QAENANHEEK-------PLDLGRMSHLVCGESKGATEEAMSVTAEARHVVKNADVGLMRK 184
           + ENA    K           G   H     +K  T +    T   R   +N   G   K
Sbjct: 234 KRENAKDAHKRQAPTTNKFSAGATQHPPARHTKNNTPKTQKQTTHDRQTTQNKSRGKRAK 413


>BM814226 similar to GP|2094888|pdb|2 Cucumber Basic Protein  A Blue Copper
           Protein, partial (46%)
          Length = 591

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
 Frame = +3

Query: 265 VVDARNTNIQDGFRSGIAVDDDVSQVCVTPQEGSK-RRRGKPKGAAIRRPNMF 316
           +VD    N + G  + +AV  +V   C TP+ GSK  R GK +    +  N F
Sbjct: 15  LVDTLVFNYRQGTHNVVAVTKEVYDKCSTPRRGSKVYRSGKDRVRLAKGQNYF 173


>TC77555 similar to GP|20260474|gb|AAM13135.1 26S proteasome subunit-like
            protein {Arabidopsis thaliana}, complete
          Length = 1665

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 269  RNTNIQDGFRSGIAVDDDVSQVCVTPQEGSKRRR 302
            R   I D  +SG++   D + VC  P + SKR R
Sbjct: 1252 REQKIHDPIKSGVSASMDNNAVCTFPVQPSKRSR 1151


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,930,417
Number of Sequences: 36976
Number of extensions: 89161
Number of successful extensions: 455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of query: 317
length of database: 9,014,727
effective HSP length: 96
effective length of query: 221
effective length of database: 5,465,031
effective search space: 1207771851
effective search space used: 1207771851
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)