TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0193.7
         (848 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93676 similar to GP|20977172|gb|AAM33305.1 glycogen branching ...   295  4e-80
TC88457 homologue to PIR|T06493|T06493 1 4-alpha-glucan branchin...   246  3e-65
AW691484 weakly similar to PIR|T48283|T48 ankyrin-like protein -...    33  0.46
AW697292 homologue to GP|22136708|gb putative isoamylase {Arabid...    32  1.3
TC84209 similar to GP|4204311|gb|AAD10692.1| lcl|prt_seq No defi...    31  2.3
BF003743 similar to GP|17016406|gb| wsv008 {shrimp white spot sy...    30  5.1
BQ158104 similar to GP|22758351|gb| hypothetical protein {Oryza ...    30  5.1
TC78387 similar to GP|22136492|gb|AAM91324.1 unknown protein {Ar...    30  5.1
TC80865 weakly similar to GP|13940211|emb|CAC37923. fructan 1-ex...    29  6.6

>TC93676 similar to GP|20977172|gb|AAM33305.1 glycogen branching enzyme
           {Glomus intraradices}, partial (37%)
          Length = 911

 Score =  295 bits (756), Expect = 4e-80
 Identities = 135/232 (58%), Positives = 176/232 (75%)
 Frame = +2

Query: 488 GIGFDYRLAMAIPDKWIDYLKNKKDHEWSMKEISLSLTNRRYSEKCVSYAESHDQSIVGD 547
           GIGFDYRL MAIPD WI  LK K+D +W+M  I  +LTNRR+ EK ++YAESHDQ++VGD
Sbjct: 2   GIGFDYRLGMAIPDMWIKLLKEKRDDDWNMGNICWTLTNRRHKEKTIAYAESHDQALVGD 181

Query: 548 KTFSFLLMDEEIYSGMSCLADASPTIERGIALHKMIHFITMSLGGEGYLNFMGNEFGHPE 607
           KT +F LMD+E+Y+ MS +   +P I+RG+ALHKMI  IT  LGGEGYLNF GNEFGHPE
Sbjct: 182 KTIAFWLMDKEMYTNMSDITPLTPIIDRGLALHKMIRLITHGLGGEGYLNFEGNEFGHPE 361

Query: 608 WIDFPREGNGWSYEKCRRQWSLVDTDHLRYKFMNAFDKAMNLLDDKFSFLASTKQIVSST 667
           W+DFPREGN  SY   RRQW++VD   LRYK++N FDKAM   ++K+ +L+S +  VS  
Sbjct: 362 WLDFPREGNNNSYHYARRQWNVVDDPLLRYKYLNEFDKAMQHSEEKYKWLSSPQAYVSLK 541

Query: 668 NEEDKVIVFERGDLVFVFNFHPETTYEGYKVGCDLPGKYRVALDSDAREFGG 719
           NE+ K+IVFER +L+++FNFHP  +Y  YK+G +  GKY + L++D  +FGG
Sbjct: 542 NEDHKLIVFERANLLWIFNFHPTNSYPDYKIGTEWAGKYSIVLNTDNPKFGG 697


>TC88457 homologue to PIR|T06493|T06493 1 4-alpha-glucan branching enzyme
           (EC 2.4.1.18) I - garden pea, partial (27%)
          Length = 1201

 Score =  246 bits (627), Expect = 3e-65
 Identities = 126/249 (50%), Positives = 163/249 (64%), Gaps = 11/249 (4%)
 Frame = +3

Query: 545 VGDKTFSFLLMDEEIYSGMSCLADASPTIERGIALHKMIHFITMSLGGEGYLNFMGNEFG 604
           VGDKT +F LMD+++Y  M+    ++P I+RGIALHKMI  ITM LGGEGYLNFMGNEFG
Sbjct: 3   VGDKTLAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFG 182

Query: 605 HPEWIDFPR-----------EGNGWSYEKCRRQWSLVDTDHLRYKFMNAFDKAMNLLDDK 653
           HPEWIDFPR            GN  SY+KCRR++ L D ++LRY  M  FD+AM  L+++
Sbjct: 183 HPEWIDFPRGDQHLPNGTVVPGNNNSYDKCRRRFDLGDAEYLRYHGMQEFDRAMQHLEER 362

Query: 654 FSFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPETTYEGYKVGCDLPGKYRVALDSD 713
           + F+ S  Q +S  NE D+VI+FER +LVFVFNFH   +Y  YKVGC  PGKY++ LDSD
Sbjct: 363 YGFMISEHQYISRKNEGDRVIIFERDNLVFVFNFHWTNSYSDYKVGCLKPGKYKIVLDSD 542

Query: 714 AREFGGHGRVGHNVDHFTAPEGIPGVPESNFNNRPNSFKILSPPRTCVVYYRVDESQEEN 773
              FGG  R+ H  ++FT+        E  +++RP SF + +P RT VVY  VD   E  
Sbjct: 543 ESLFGGFNRLNHTAEYFTS--------EGWYDDRPRSFLVYAPCRTAVVYALVD-GVESE 695

Query: 774 SISNLVGVQ 782
            +   VGV+
Sbjct: 696 PVELSVGVE 722


>AW691484 weakly similar to PIR|T48283|T48 ankyrin-like protein - Arabidopsis
           thaliana, partial (27%)
          Length = 646

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 1   MITSFSLQSFNIASTAHNSRNKQDLAKQNSVELVLGYRNPKGC 43
           +++SFSL+     S++H S+NK+ +  +   E+VLG  N  GC
Sbjct: 217 IVSSFSLRKSTKLSSSHFSQNKRSIFMKKI*EIVLGN*NRSGC 89


>AW697292 homologue to GP|22136708|gb putative isoamylase {Arabidopsis
           thaliana}, partial (13%)
          Length = 343

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 394 VLRFLLSNLRWWLEEFKFDGFRFD 417
           V+  +L +LR W+ E+  DGFRFD
Sbjct: 65  VMDLILDSLRHWVTEYHVDGFRFD 136


>TC84209 similar to GP|4204311|gb|AAD10692.1| lcl|prt_seq No definition line
           found {Arabidopsis thaliana}, partial (36%)
          Length = 701

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 29/109 (26%), Positives = 46/109 (41%), Gaps = 2/109 (1%)
 Frame = +1

Query: 692 TYEGYKVGCDLPGKYRVALDSDAREFGGHGRVG--HNVDHFTAPEGIPGVPESNFNNRPN 749
           T E +    + P   R  L++    + GHG  G  H+ +H +        P+  F   P+
Sbjct: 37  TVESHHAEAEKPHSNRRRLEA----WLGHGGKGQ*HHSNHIS--------PQKKFKKPPS 180

Query: 750 SFKILSPPRTCVVYYRVDESQEENSISNLVGVQETSTAADIVANIPDGS 798
           +FKILSP RT             NSI+  +    T+T + +  N  + S
Sbjct: 181 TFKILSPLRT------------TNSINYELSSMTTATLSALFRNFLNNS 291


>BF003743 similar to GP|17016406|gb| wsv008 {shrimp white spot syndrome
           virus}, partial (16%)
          Length = 598

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 623 CRRQWSLVDTDHLRYKFMNAFDKAMNLLDDKFSF 656
           C R+WSL +T +L +KF + + KA  +L  +F F
Sbjct: 291 CSRKWSLYNTRNLTWKF-SLWKKAKKILSVQFKF 389


>BQ158104 similar to GP|22758351|gb| hypothetical protein {Oryza sativa
           (japonica cultivar-group)}, partial (9%)
          Length = 993

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 235 PPLSERYQFKYPRPPKPKAPRIYEAH-VGMSSSEPRINSYKEFADDILPRIR 285
           PP+  R+   +  PP      +Y AH +G +S+ PR  S+  +  ++ PR+R
Sbjct: 330 PPMLARFLLPHAVPPP-----LYRAHHLGGTSASPRPTSFLPWGINLYPRVR 190


>TC78387 similar to GP|22136492|gb|AAM91324.1 unknown protein {Arabidopsis
            thaliana}, partial (58%)
          Length = 2019

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 219  VDPTKFAAPYDGVY--WDPPLSERYQFKYPRPPKPKA---PRIYEAHVGMSSSEPRI 270
            V+P K A    GV+  W+ P  +  +   PR  K +    P   E H+G S+SEP I
Sbjct: 1813 VNPRKLAGGGTGVFLPWNVPSRKPTKHLPPRAQKGRLLALPSPVEPHIGESTSEPSI 1983


>TC80865 weakly similar to GP|13940211|emb|CAC37923. fructan 1-exohydrolase
           IIb {Cichorium intybus}, partial (26%)
          Length = 809

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
 Frame = +3

Query: 57  RVSTGFKGVAVITDNKSAMSATEEDLENIGILHIDPAIKPFKDHFKCRLKRYIDQKKLIE 116
           R   GFK + +    +S++    E      I  IDP +K         L+  ID + +IE
Sbjct: 285 RAGDGFKCLMISDQTRSSLREDVEKTSYATIFDIDPNLKTIS------LRSLID-RSIIE 443

Query: 117 EYEGGLEE--FAQGYLKFGFNREEGGIVYREWAPAAQEAQIIGDFNEWNGSNHPMEKNQF 174
            +  G      ++ Y  F  +++    V+ +      ++ +I   N W+     M++ QF
Sbjct: 444 SFGDGGRACITSRAYPLFATDKDAHLFVFND----GSQSVVISQLNAWS-----MKQAQF 596

Query: 175 GVWSI 179
           G  SI
Sbjct: 597 GTESI 611


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,006,568
Number of Sequences: 36976
Number of extensions: 410977
Number of successful extensions: 1935
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of query: 848
length of database: 9,014,727
effective HSP length: 104
effective length of query: 744
effective length of database: 5,169,223
effective search space: 3845901912
effective search space used: 3845901912
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)