TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0193.6
         (491 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78044 homologue to SP|P25890|CATA_PEA Catalase (EC 1.11.1.6). ...   550  e-157
TC89651 homologue to SP|O48561|CAT4_SOYBN Catalase 4 (EC 1.11.1....   247  6e-66
BQ154509 similar to PIR|T42027|T42 probable catalase (EC 1.11.1....   124  6e-29
AL385333                                                               31  0.94
TC88895 similar to GP|19387172|gb|AAL87122.1 SEC6 {Arabidopsis t...    30  2.7
TC92366                                                                29  3.6
AW560138                                                               29  4.7
BE204352 similar to GP|1353239|gb putative RNA helicase A {Arabi...    28  6.1
TC79002 similar to GP|15375305|gb|AAK54745.2 putative transcript...    28  8.0

>TC78044 homologue to SP|P25890|CATA_PEA Catalase (EC 1.11.1.6). [Garden
           pea] {Pisum sativum}, partial (56%)
          Length = 961

 Score =  550 bits (1417), Expect = e-157
 Identities = 255/274 (93%), Positives = 267/274 (97%)
 Frame = +3

Query: 4   QHRPSSAFNSPFWTTNSGAPVWNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVV 63
           +HRPSSA+NSPFWTTNSGAPVWNNN+S+TVG RGPILLEDYHLVEKLA FDRERIPERVV
Sbjct: 138 KHRPSSAYNSPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLAQFDRERIPERVV 317

Query: 64  HARGASAKGFFEVTHDVSHLTCADFLRAPGVQTPIILRFSTVIHERGSPETLRDPRGFAV 123
           HARGASAKGFFEVTHD+SHLTCADFLRAPGVQTP+I+RFSTVIHERGSPETLRDPRGFAV
Sbjct: 318 HARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAV 497

Query: 124 KFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHFPESLH 183
           KFYTREGNFDLVGNNFPVFFV DGM FPDMVHALKPNPKSHIQENWRILDFFSHFPESLH
Sbjct: 498 KFYTREGNFDLVGNNFPVFFVHDGMNFPDMVHALKPNPKSHIQENWRILDFFSHFPESLH 677

Query: 184 MFTFLFDDVGVPQDYRHMDGFGVNTYTLINKAGKVVYVKFHWKPTCGVKCLLEEEAIKVG 243
           MF+FLFDDVGVPQDYRHMDGFGVNTY+LINKAGK VYVKFHWKPTCGVK LLEEEAIKVG
Sbjct: 678 MFSFLFDDVGVPQDYRHMDGFGVNTYSLINKAGKAVYVKFHWKPTCGVKRLLEEEAIKVG 857

Query: 244 GSNHSHATQDLYESIAAGNYPEWKLFIQTIDPDH 277
           G+NHSHATQDLY+SIAAGNYPEWKLF+QTIDP H
Sbjct: 858 GANHSHATQDLYDSIAAGNYPEWKLFVQTIDPAH 959


>TC89651 homologue to SP|O48561|CAT4_SOYBN Catalase 4 (EC 1.11.1.6).
           [Soybean] {Glycine max}, partial (39%)
          Length = 780

 Score =  247 bits (631), Expect = 6e-66
 Identities = 113/133 (84%), Positives = 123/133 (91%)
 Frame = +2

Query: 296 IIPLQPVGRMVLNKNIDNFFAENEQLAFCPAIVVPGISYSDDKMLQTRIFSYADSQRHRL 355
           IIPLQPVGR+VLNKNIDNFFAENEQLAFCPAI+VPG+ YSDDKMLQTRIFSYADSQRHRL
Sbjct: 2   IIPLQPVGRLVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKMLQTRIFSYADSQRHRL 181

Query: 356 GPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAERYPIPPAICTGS 415
           GPNYLQLPANAPKCAHHNNHHEGFMNF+HRDEEVNYFPSR+DPVRHAE+ PIP A  +  
Sbjct: 182 GPNYLQLPANAPKCAHHNNHHEGFMNFIHRDEEVNYFPSRHDPVRHAEKVPIPTANFSAC 361

Query: 416 RERCAIEKENNFK 428
           RE+C I K+NN +
Sbjct: 362 REKCNIPKQNNLQ 400



 Score =  135 bits (341), Expect = 3e-32
 Identities = 64/89 (71%), Positives = 72/89 (79%)
 Frame = +3

Query: 403 ERYPIPPAICTGSRERCAIEKENNFKQPGERYRSFAPDRQDRFVRRWVDALSDPRVTHEI 462
           +R+P    I   + +    +    FKQPGERYRS+APDRQDRF+RRWVDALSDPRVTHEI
Sbjct: 324 KRFPFLLLISLHAVKSAIFQSRTTFKQPGERYRSWAPDRQDRFLRRWVDALSDPRVTHEI 503

Query: 463 RSTWISYWSQADRSLGQKIASHLNLRPSI 491
           RS WISYWSQADRSLGQKIASHLN+RPSI
Sbjct: 504 RSIWISYWSQADRSLGQKIASHLNMRPSI 590


>BQ154509 similar to PIR|T42027|T42 probable catalase (EC 1.11.1.6) -
           Streptomyces coelicolor, partial (13%)
          Length = 411

 Score =  124 bits (312), Expect = 6e-29
 Identities = 62/118 (52%), Positives = 83/118 (69%)
 Frame = -3

Query: 15  FWTTNSGAPVWNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFF 74
           + TT +G  ++  ++S+T G RGP LL+D+HL EK+ +FD ERIPERVVHARGA+A G F
Sbjct: 352 YLTTATGTRLYETDHSLTAGERGPTLLQDHHLREKITHFDHERIPERVVHARGAAAHGTF 173

Query: 75  EVTHDVSHLTCADFLRAPGVQTPIILRFSTVIHERGSPETLRDPRGFAVKFYTREGNF 132
            + +  +   C   L A G +TP+ +RFSTV+  RGS +T+RD RGFA KFYT EG F
Sbjct: 172 -LANGAAENICKASLFASGARTPVFVRFSTVLGSRGSADTVRDTRGFATKFYTDEGVF 2


>AL385333 
          Length = 310

 Score = 31.2 bits (69), Expect = 0.94
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 286 LDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCP 325
           LD TK W E+  P   VG + LN+NI     ++++L F P
Sbjct: 46  LDCTKPWDENEFPFTDVGEINLNENIP--MEDSQKLEFNP 159


>TC88895 similar to GP|19387172|gb|AAL87122.1 SEC6 {Arabidopsis thaliana},
           partial (52%)
          Length = 1551

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 2/61 (3%)
 Frame = +2

Query: 41  LEDYHLVEKLANFDRERIPERVVHARGA--SAKGFFEVTHDVSHLTCADFLRAPGVQTPI 98
           L  Y L  +L+N   E +P+          + KGF EV  +  H T +     PGVQ  +
Sbjct: 431 LRCYDLAMELSNSTIEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVQELL 610

Query: 99  I 99
           +
Sbjct: 611 V 613


>TC92366 
          Length = 1259

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 17/42 (40%), Positives = 21/42 (49%)
 Frame = +3

Query: 148 MKFPDMVHALKPNPKSHIQENWRILDFFSHFPESLHMFTFLF 189
           +KFP  V    PN  SH+  NW    FFS F      F+F+F
Sbjct: 843 LKFPLFV---APNGLSHLHLNWICHSFFSLFYSCRVSFSFVF 959


>AW560138 
          Length = 698

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 17/55 (30%), Positives = 26/55 (46%)
 Frame = +2

Query: 25 WNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHD 79
          W+N N+++VG+     +    L+ KL N +   I   VV   G S K + E   D
Sbjct: 20 WSNLNNLSVGIEVATFVTSSGLLRKLWNVNDANIVSNVVGNNGLSWKVYKEQDTD 184


>BE204352 similar to GP|1353239|gb putative RNA helicase A {Arabidopsis
           thaliana}, partial (13%)
          Length = 572

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
 Frame = +2

Query: 273 IDPDHE-DRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAIVVPG 331
           +D  HE DR+    L + +    D++PL P  R+VL     +    ++    CP I VPG
Sbjct: 359 MDEIHERDRYSDFMLAIMR----DMLPLYPHLRLVLMSATIDTARFSQYFGGCPVIQVPG 526

Query: 332 ISY 334
            +Y
Sbjct: 527 FTY 535


>TC79002 similar to GP|15375305|gb|AAK54745.2 putative transcription factor
            MYB124 {Arabidopsis thaliana}, partial (54%)
          Length = 2304

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 35/168 (20%), Positives = 63/168 (36%), Gaps = 5/168 (2%)
 Frame = +3

Query: 95   QTPIILRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMV 154
            Q  ++   +  +      ++L +      +F  R    D+ G   P   + D     D++
Sbjct: 1248 QAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDVSGYKIPDLQLVD---LKDLL 1418

Query: 155  HALKPNPKSHIQENWRILDFFSHFPESLHMFTFLFDDVGVPQDYRHMDGFGVNTYTLINK 214
              LK N +  I+  WR ++F+   PES    T                     + TL + 
Sbjct: 1419 QDLKNNSEE-IEPCWRYMEFYEDSPESSEHST--------------------GSTTLPHC 1535

Query: 215  AGKVVYVKFHWKPTCGVKCLLEEEAIKVGGSNH---SHAT--QDLYES 257
             G+ +    H      +K +  E   ++GG +H   S AT  QD++ S
Sbjct: 1536 TGENLEHSLHQDSGTELKSIQIEHQKEIGGCDHVILSSATLDQDIFSS 1679


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,724,043
Number of Sequences: 36976
Number of extensions: 284111
Number of successful extensions: 1406
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of query: 491
length of database: 9,014,727
effective HSP length: 100
effective length of query: 391
effective length of database: 5,317,127
effective search space: 2078996657
effective search space used: 2078996657
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)