BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0193.5
(903 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84399 weakly similar to PIR|C86339|C86339 protein F2D10.12 [im... 315 6e-86
TC93009 similar to GP|2262113|gb|AAB63621.1| unknown protein {Ar... 68 2e-11
BG581784 homologue to GP|23504753|emb nodule inception protein {... 64 3e-10
AW687373 weakly similar to GP|20259460|gb| unknown protein {Arab... 42 8e-04
BQ149637 similar to PIR|D85135|D85 hypothetical protein AT4g1261... 33 0.64
TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {... 32 0.84
TC92996 31 1.9
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 31 2.4
TC85412 homologue to GP|15450763|gb|AAK96653.1 elongation factor... 30 3.2
BQ752299 similar to GP|11595639|e conserved hypothetical protein... 30 4.1
TC84241 similar to GP|8096390|dbj|BAA95861.1 hypothetical protei... 30 4.1
TC80653 similar to GP|20257495|gb|AAM15917.1 purple acid phospha... 30 4.1
AW774747 weakly similar to PIR|F84833|F8 probable SNF2/SWI2 fami... 30 4.1
BF639598 30 5.4
TC78882 homologue to GP|8843731|dbj|BAA97279.1 zinc finger prote... 30 5.4
TC82611 30 5.4
TC83115 homologue to GP|4204303|gb|AAD10684.1| lcl|prt_seq No de... 30 5.4
BQ144032 similar to PIR|S67699|S676 probable membrane protein YD... 29 9.2
TC88259 similar to GP|6729037|gb|AAF27033.1| unknown protein {Ar... 29 9.2
>TC84399 weakly similar to PIR|C86339|C86339 protein F2D10.12 [imported] -
Arabidopsis thaliana, partial (16%)
Length = 661
Score = 315 bits (806), Expect = 6e-86
Identities = 160/218 (73%), Positives = 175/218 (79%), Gaps = 1/218 (0%)
Frame = +3
Query: 357 GCRHSEDNYLHCISPVEQACYVGDPSVRFFHEACMEHHLLKGQGVAGKAFMINQPFFSTD 416
GCRHS+DNY HCISPVE ACYVGD SVRFFHEACMEHHLL GQGVAG AFM NQP FSTD
Sbjct: 6 GCRHSDDNYTHCISPVEYACYVGDSSVRFFHEACMEHHLLIGQGVAGGAFMTNQPCFSTD 185
Query: 417 ITMLSKTDYPLSHHARLFGLRAAVAIRLRSIYSSADDYVLEFFLPVNCNDSEEQKNMLIS 476
IT LSKTDYPLSHHARLFGLRAAVAIRLRSIYS +DDYVLEFFLPV+CND EEQK ML S
Sbjct: 186 ITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSISDDYVLEFFLPVDCNDGEEQKKMLTS 365
Query: 477 LSIIIQRCCRSLRVITDKELERTS-SSVEVMALEDSGFARTVKWSEPQHITSVASLEPEE 535
LS+IIQR CRSLRVITDKELE+ + SS EVMA+ D GFA S QH SL+ EE
Sbjct: 366 LSMIIQRVCRSLRVITDKELEKNNLSSNEVMAVADIGFATDAVQSGLQHKRMAVSLDGEE 545
Query: 536 KSSETVGGKFSDLREHQEDSILKGNIECDRECSPFVEG 573
K +ET+ KFS+ R QE L+G+ +C +ECSP VEG
Sbjct: 546 KFNETMSSKFSEQRRQQESLTLRGDADCGKECSPSVEG 659
>TC93009 similar to GP|2262113|gb|AAB63621.1| unknown protein {Arabidopsis
thaliana}, partial (11%)
Length = 639
Score = 67.8 bits (164), Expect = 2e-11
Identities = 31/74 (41%), Positives = 49/74 (65%)
Frame = +1
Query: 818 VKVTYGDEKTRFRMPKSWSYEHLLQEIARRFNVSDMSKFDVKYLDDDLEWVLLTCDADLE 877
+K TY ++ RFR+ + L +E+++R + ++ FD+KY+DDD EWVL+ CDADL+
Sbjct: 208 IKATYREDIIRFRVSLNCGIVELKEEVSKRLKL-EVGTFDIKYMDDDNEWVLIACDADLQ 384
Query: 878 ECIDVCLSSESSTI 891
EC+ + SS S I
Sbjct: 385 ECMYLSRSSGGSNI 426
>BG581784 homologue to GP|23504753|emb nodule inception protein {Pisum
sativum}, partial (6%)
Length = 443
Score = 63.9 bits (154), Expect = 3e-10
Identities = 31/53 (58%), Positives = 42/53 (78%), Gaps = 1/53 (1%)
Frame = +1
Query: 847 RFNVSDMSKFDVKYLDDDLEWVLLTCDADLEECIDVCLSSESSTIKLCI-QAS 898
RFN++DM+ +KYLDD+ EWV+L+CDADLEEC D+ SS + TI+L + QAS
Sbjct: 1 RFNLTDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQAS 159
>AW687373 weakly similar to GP|20259460|gb| unknown protein {Arabidopsis
thaliana}, partial (5%)
Length = 172
Score = 42.4 bits (98), Expect = 8e-04
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1
Query: 437 RAAVAIRLRSIYSSADDYVLEFFLPVNCNDSEEQKNMLISL 477
R AI LRS ++ DDYVLEFFLP + EQK +L S+
Sbjct: 4 RGCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSI 126
>BQ149637 similar to PIR|D85135|D85 hypothetical protein AT4g12610 [imported]
- Arabidopsis thaliana, partial (15%)
Length = 538
Score = 32.7 bits (73), Expect = 0.64
Identities = 33/92 (35%), Positives = 44/92 (46%), Gaps = 2/92 (2%)
Frame = -1
Query: 668 SFYSNFPDLASPNLSGASLVSALNQSENPNSLSIQPDLGPLSPEGATKSLSS-SCSQGSL 726
SF+S+FPDL P S SL S+ + S + +S G GA SLSS S S
Sbjct: 340 SFFSSFPDLLRPPPS--SLXSSSSSSSSSCLIS-----GGAGTSGAKSSLSSGSLPTASS 182
Query: 727 SSHSCSSMPEQQP-HTSDVACNKDPVVGKDSA 757
SS SS + P TS + + P +G S+
Sbjct: 181 SSVKISSCSQSSPFSTS*SSSSWSPPLGPSSS 86
>TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {Arabidopsis
thaliana}, partial (39%)
Length = 883
Score = 32.3 bits (72), Expect = 0.84
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Frame = -1
Query: 659 ASGASFKIDSFYSNFPDLASPNLSGASLVSALNQSENPNSL----------SIQPDLGPL 708
A G S S+ +SP+ S +S S + S +P+SL S P P
Sbjct: 577 AGGWGVSSSSSSSSSSSSSSPSSSSSS--SPSSSSSSPSSLPPAPLASGSSSGSPSSSPS 404
Query: 709 SPE--GATKSLSSSCSQGSLSSHSCSSM 734
SPE ++ S SSSC+ S SS S SS+
Sbjct: 403 SPE*SSSSPSSSSSCTSSSSSSSSSSSV 320
>TC92996
Length = 669
Score = 31.2 bits (69), Expect = 1.9
Identities = 18/54 (33%), Positives = 25/54 (45%)
Frame = +1
Query: 799 QSYLLKTCHKATPKEDAHRVKVTYGDEKTRFRMPKSWSYEHLLQEIARRFNVSD 852
Q+Y L PK + V YGD+K R K SYE + ++ NV+D
Sbjct: 460 QAYWLADSELIAPKNEQKVSAVAYGDQKEAKRRVKKESYEVGIIQVKNSENVND 621
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 30.8 bits (68), Expect = 2.4
Identities = 24/71 (33%), Positives = 35/71 (48%)
Frame = -3
Query: 677 ASPNLSGASLVSALNQSENPNSLSIQPDLGPLSPEGATKSLSSSCSQGSLSSHSCSSMPE 736
+SP+ S +S S+ + S + +S S S ++ S SSSCS S SS S SS
Sbjct: 244 SSPSSSSSSSSSSSSSSSSSSSSSCSSS----SSSSSSSSSSSSCSSSSSSSCS-SSSSS 80
Query: 737 QQPHTSDVACN 747
P +S C+
Sbjct: 79 TSPSSSSSLCS 47
>TC85412 homologue to GP|15450763|gb|AAK96653.1 elongation factor EF-2
{Arabidopsis thaliana}, complete
Length = 3229
Score = 30.4 bits (67), Expect = 3.2
Identities = 23/105 (21%), Positives = 45/105 (41%), Gaps = 1/105 (0%)
Frame = +3
Query: 109 NNQSETETHSVVEGTSDGVKRWWIAPTCSPGLGPSIMEKLIRALKWIKQFNWNKDMLIQI 168
+N+ E + EG ++ + I P P I+ + Q+ W+KD+ +I
Sbjct: 1917 HNRLYMEARPLEEGLAEAIDEGTIGPRDDPKNRSKILSE---------QYGWDKDLAKKI 2069
Query: 169 WVPVPRGDRPILSANNLPFSLDSGSENLARYRE-ISEGFQFSAEE 212
W P P N+ + G + L ++ + GFQ++++E
Sbjct: 2070 WCFGPETTGP-----NMVVDMCKGVQYLNEIKDSVVAGFQWASKE 2189
>BQ752299 similar to GP|11595639|e conserved hypothetical protein {Neurospora
crassa}, partial (7%)
Length = 1005
Score = 30.0 bits (66), Expect = 4.1
Identities = 26/92 (28%), Positives = 34/92 (36%)
Frame = +2
Query: 54 PFSSPLFDPSFSWPALETNEPTHVEDQHESQEAPLGNTQLVSQSQNMVNVVDGRYNNQSE 113
P S PL PS V+ H P G SQS N+V DGR N
Sbjct: 320 PSSQPLARPSSVHSPTSPRTTRAVQPSHAPATRPRGP----SQSMNLVTPTDGREN---- 475
Query: 114 TETHSVVEGTSDGVKRWWIAPTCSPGLGPSIM 145
D ++RW P S G+G +++
Sbjct: 476 -----------DPLQRWKGVPIISWGVGGTMV 538
>TC84241 similar to GP|8096390|dbj|BAA95861.1 hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (16%)
Length = 774
Score = 30.0 bits (66), Expect = 4.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 691 NQSENPNSLSIQPDLGPLSPEGATKSLSSSCSQGSLSSHSCSSMPEQQ 738
+ + P+SL + PD P+SP + S + SLS + S P Q
Sbjct: 85 SSDQRPSSLHVLPDPQPISPTSPNATSRSYAATASLSPSTTSLHPRSQ 228
>TC80653 similar to GP|20257495|gb|AAM15917.1 purple acid phosphatase
{Arabidopsis thaliana}, partial (67%)
Length = 1661
Score = 30.0 bits (66), Expect = 4.1
Identities = 27/88 (30%), Positives = 36/88 (40%)
Frame = +2
Query: 722 SQGSLSSHSCSSMPEQQPHTSDVACNKDPVVGKDSADVVLKRIRSEAELKSHSENKAKLF 781
SQ ++ H S+ QQ H S +VGKD V E E KA +
Sbjct: 422 SQLIITPHQRSNSEPQQVHIS--------LVGKDKMRVSWITEDKETETMVEYGTKAGEY 577
Query: 782 PRSLSQETLGEHTKTEYQSYLLKTCHKA 809
S++T+GEHT +Y Y H A
Sbjct: 578 ----SEKTMGEHTSYQYFFYNSGKIHNA 649
>AW774747 weakly similar to PIR|F84833|F8 probable SNF2/SWI2 family
transcription factor [imported] - Arabidopsis thaliana,
partial (10%)
Length = 780
Score = 30.0 bits (66), Expect = 4.1
Identities = 24/93 (25%), Positives = 40/93 (42%), Gaps = 3/93 (3%)
Frame = +2
Query: 473 MLISLSIIIQRCCRSLRVITDKELERTSSSVEVMALEDSGFART---VKWSEPQHITSVA 529
+L L + Q C L V+ ++ + SS+ E + + FAR S+ +SV+
Sbjct: 53 VLCELDELFQHCEARLFVLKNERGDIISSAEEAVDFQKKSFARNHFLSNLSQSNQSSSVS 232
Query: 530 SLEPEEKSSETVGGKFSDLREHQEDSILKGNIE 562
++ EE VG K R +L G I+
Sbjct: 233 DIDNEESRKRNVGQKVVTSRSASILEVLLGVIK 331
>BF639598
Length = 588
Score = 29.6 bits (65), Expect = 5.4
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 678 SPNLSGASLVSALNQS--ENPNSLSIQPDLGPLSPEGATKSLSSSCSQGSLSSHSCSSMP 735
+PN S+ S + NP+S IQ +L P+ + + GS+SSHS SS
Sbjct: 271 NPNSDSQSVSSPSKHATFSNPSSTKIQKNLNFSPPKDNNSTKNPLSDSGSVSSHSNSSHR 450
Query: 736 EQ 737
E+
Sbjct: 451 EK 456
>TC78882 homologue to GP|8843731|dbj|BAA97279.1 zinc finger protein
{Arabidopsis thaliana}, partial (35%)
Length = 983
Score = 29.6 bits (65), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +3
Query: 610 DAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKK 641
D ++ +G T K CR+HG K+W K K
Sbjct: 495 DPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 590
>TC82611
Length = 814
Score = 29.6 bits (65), Expect = 5.4
Identities = 17/54 (31%), Positives = 26/54 (47%)
Frame = +1
Query: 302 DLTSLKHSSIQNAKARDKSYEAALPEIQEVLRSACHMHKLPLAQTWVSCFQQGK 355
+LTSL+H I + D +E P +Q+V+ C + LP +S Q K
Sbjct: 64 NLTSLEHLEIGDVDNLDIWFEDNFPSLQKVVVYGCDLQALPQKMCDLSSLQHVK 225
>TC83115 homologue to GP|4204303|gb|AAD10684.1| lcl|prt_seq No definition
line found {Arabidopsis thaliana}, partial (25%)
Length = 519
Score = 29.6 bits (65), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +2
Query: 610 DAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKK 641
D ++ +G T K CR+HG K+W K K
Sbjct: 389 DPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 484
>BQ144032 similar to PIR|S67699|S676 probable membrane protein YDL151c - yeast
(Saccharomyces cerevisiae), partial (10%)
Length = 1167
Score = 28.9 bits (63), Expect = 9.2
Identities = 30/114 (26%), Positives = 50/114 (43%)
Frame = -3
Query: 620 TTLKRVCRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGASFKIDSFYSNFPDLASP 679
T L+RVC + ++ + H L L +DS ++ +F S L+
Sbjct: 1003 TVLERVCYADDVS------VRLLAHCPLSLPL-LDSYS-------RLRAFLSRPCPLSLV 866
Query: 680 NLSGASLVSALNQSENPNSLSIQPDLGPLSPEGATKSLSSSCSQGSLSSHSCSS 733
L SL S+ + S+ P+ + DL +SP + + +SC+ LS S SS
Sbjct: 865 ALISISLSSSRHSSDPPSRIVFVSDLFIISPAPLSSTHRNSCACALLSVRSVSS 704
>TC88259 similar to GP|6729037|gb|AAF27033.1| unknown protein {Arabidopsis
thaliana}, partial (35%)
Length = 1757
Score = 28.9 bits (63), Expect = 9.2
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +3
Query: 65 SWPALETNEPTHVEDQHESQEAPLGNTQLVSQSQNMVNVVDGRYNNQSETETHSVVEGTS 124
S A ET H+E + + +L S ++ NV D R S S+ + S
Sbjct: 927 STQAAETASKQHLESTKKVAKLEAECRRLKSMTRKTFNVNDNRSLTASSVYIESLTDSIS 1106
Query: 125 DGVKRWWIAPTCSPGLGPSIM 145
DG + P+CS +++
Sbjct: 1107 DGGELNEYEPSCSDSCSSALI 1169
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,219,548
Number of Sequences: 36976
Number of extensions: 436806
Number of successful extensions: 2393
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 2341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2385
length of query: 903
length of database: 9,014,727
effective HSP length: 105
effective length of query: 798
effective length of database: 5,132,247
effective search space: 4095533106
effective search space used: 4095533106
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0193.5