BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.13
(1558 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 91 5e-18
BG453335 weakly similar to GP|18071369|g putative gag-pol polypr... 88 3e-17
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 75 3e-13
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi... 45 1e-12
TC93065 69 1e-11
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 45 3e-11
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 55 2e-07
AW773859 49 1e-05
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 47 6e-05
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa... 43 0.001
TC85757 similar to PIR|T09648|T09648 nucleolin homolog nuM1 - al... 34 0.39
AW257160 similar to GP|9757790|dbj| gene_id:MUA22.9~unknown prot... 33 1.1
BG458197 similar to PIR|T45754|T457 hypothetical protein F24M12.... 32 2.5
BQ154516 31 4.3
TC91471 similar to GP|8778257|gb|AAF79266.1| F12K21.21 {Arabidop... 31 4.3
BF631997 weakly similar to GP|18542925|gb Putative pol polyprote... 31 4.3
AW684891 30 7.3
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 30 7.3
TC85573 homologue to GP|15824574|gb|AAL09401.1 ribosomal protein... 30 9.6
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 90.5 bits (223), Expect = 5e-18
Identities = 44/126 (34%), Positives = 71/126 (55%)
Frame = +1
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
G + + + TH T L+ +H DL GP + S+GG+RY+ +DDF R WV F+
Sbjct: 43 GNRKKVSFSTATH-RTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRY 219
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
K++TF F++ ++ + G + K+ +D+ EF +S F+E+C GI + P QQ
Sbjct: 220 KNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQ 399
Query: 839 NGVVEK 844
NGV E+
Sbjct: 400 NGVAER 417
>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (11%)
Length = 660
Score = 87.8 bits (216), Expect = 3e-17
Identities = 47/142 (33%), Positives = 89/142 (62%)
Frame = +1
Query: 55 KALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKE 114
K L I +D+ F+ I+ T +K+A IL HEG +V +LQ L +F+ ++M++
Sbjct: 136 KELFLIQ*SLDEGNFKRISKSTRSKEASNILEKYHEGDDKVEQIKLQSLRRKFKLMQMED 315
Query: 115 EETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIV 174
E+ + ++ K+ ++ N A GE ++++++V KI+R+LS RFD V AI E++D+ + +
Sbjct: 316 EKKIADYISKLINVVNQIKAYGEVVTDQQIVEKIMRTLSPRFDFIVVAIHESKDVKTLKI 495
Query: 175 DELIGSLQTFEMSLNERSEKKN 196
+EL SL+ ++ + ERS +++
Sbjct: 496 EELKSSLEAHKLMVYERSSERS 561
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 74.7 bits (182), Expect = 3e-13
Identities = 54/211 (25%), Positives = 93/211 (43%), Gaps = 3/211 (1%)
Frame = -3
Query: 638 ENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEEETK---LWHKKLGHLNPKSMKKII 694
E+ +++ G+ D YM L KC + LWH +LGH + +++ +
Sbjct: 707 ESSQLIGEGVTKGD-LYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRALNLM- 534
Query: 695 TKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESF 754
LP + + E K C C +GK + + + T +L++ DL S
Sbjct: 533 -------LPGV-VFENKNCEACILGKHCKNVFPR-TSTVYENCFDLIYTDLW-TAPSLSR 384
Query: 755 GGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFEN 814
+Y +D+ S++TW++ I K + F+ + I +RSD+G E+ +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 815 SKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
F + GI H+ S P T QQNGV ++K
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRK 111
>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
thaliana}, partial (35%)
Length = 837
Score = 45.4 bits (106), Expect(3) = 1e-12
Identities = 27/84 (32%), Positives = 45/84 (53%)
Frame = +1
Query: 116 ETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVD 175
E V + +V ++N E + + +++ KILRSL +F+ V IEE +D+ + ++
Sbjct: 472 ERVRVYFSRVISISNQLKRNSEKLEDVRIMEKILRSLDPKFEHIVEKIEETKDLETMTIE 651
Query: 176 ELIGSLQTFEMSLNERSEKKNKSI 199
+L GSLQ + E KK K I
Sbjct: 652 KLQGSLQAY-----EEKHKKKKDI 708
Score = 43.1 bits (100), Expect(3) = 1e-12
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +3
Query: 20 WKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLINTCTVAK 79
W+ K KE L + T ++ + + KAL I+ +D++ F I+ T AK
Sbjct: 201 WEVVEKGYKESQDEDSLTKAQRDTLKDSRKR--DKKALFLIYQALDEDEFEKISNATSAK 374
Query: 80 DAWEILRVAHEGTTRVRVSRLQL 102
+AWE L+ + +G +V+ RLQ+
Sbjct: 375 EAWEKLKTSCQGEDKVKKVRLQI 443
Score = 23.1 bits (48), Expect(3) = 1e-12
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +2
Query: 103 LTTQFENLKMKEEETVF 119
L +FE+L MKE E++F
Sbjct: 443 LRGEFESLHMKESESIF 493
>TC93065
Length = 783
Score = 68.9 bits (167), Expect = 1e-11
Identities = 57/214 (26%), Positives = 91/214 (41%), Gaps = 1/214 (0%)
Frame = +2
Query: 103 LTTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTA 162
L +FE LKMKE ETV EF ++ + LGE +S++++V KIL L + F+ K+++
Sbjct: 215 LRREFEALKMKETETVREFSDRISKVVTQIRLLGEDLSDQRVVEKILVCLPEMFEAKISS 394
Query: 163 IEEAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEA 222
+EE ++ I V EL+ +LQ E + R E EN+ A
Sbjct: 395 LEENKNFSEITVAELVNALQASEQRRSLRME-----------------------ENVEGA 505
Query: 223 ITLLGRKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK-*VQCHECEG 281
+ N+ + F +K P + KD DK + V+C C
Sbjct: 506 FLANNKGKNQSFKSFGKKKFPPCP-----------HCKKDTHLDKFCWYRPGVKCRACNQ 652
Query: 282 YGHIRSECATFLKKQGKGMVATWSDDDSEEEEEP 315
GH+ C +Q + + +E+EEP
Sbjct: 653 LGHVEKVCKNKTNQQEQEARVV---EHHQEDEEP 745
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 45.4 bits (106), Expect(2) = 3e-11
Identities = 39/103 (37%), Positives = 51/103 (48%), Gaps = 11/103 (10%)
Frame = -3
Query: 1119 KDTLRLKELILMK--HLLQWLA*NQSDCC*EWHVF*---------SSNCIKWMLRVHS*M 1167
KDT++ KE +M+ HLL EW + S+C KWM RVH M
Sbjct: 393 KDTIKKKE*TMMRLFHLLP-----------EWKLLEF**LLLHSWGSSCTKWM*RVHLLM 247
Query: 1168 AI*MRRFMLNNQKALWIQLFQIMFTN*ERLCMD*SKHLGHGMK 1210
I RR + +N L +Q +QIM ++* R M *SK HGMK
Sbjct: 246 EISKRRCLSSNLLDLKMQRYQIMCSD*IRHYMV*SKLQEHGMK 118
Score = 42.4 bits (98), Expect(2) = 3e-11
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = -1
Query: 1046 SFPELNQRTSKRL*LMNTGLMLCKRNWVNSREIEYGILFQDQMM*M*LVLSGFSET 1101
S+ L+ R K+ +M TG +LCK+N ++ +E+ YG F D *L L GF ET
Sbjct: 602 SYHLLSPRMLKKHCVMQTGSILCKKNSISLKEVRYGTWFLDLKAKQ*LELGGFLET 435
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 55.5 bits (132), Expect = 2e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Frame = +1
Query: 44 KEEDEEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLL 103
K E SKA +F V + +F I T A + W L+ +EG R+R + L
Sbjct: 316 KNHKERKTRKSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNL 495
Query: 104 TTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEK 143
+FE KMKE ET+ E+ K+ +AN LG + + +
Sbjct: 496 IREFEMQKMKESETIKEYANKLISIANKVRLLGSELXDSR 615
>AW773859
Length = 538
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/82 (32%), Positives = 44/82 (52%)
Frame = -3
Query: 677 LWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSK 736
LWH +LGHL S +K+++ + P + I++ VC C + + P++ T+ A SK
Sbjct: 230 LWHFRLGHL---SNRKLLSLHS--NFPFITIDQNSVCDICHYSRHKKLPFQLSTNRA-SK 69
Query: 737 SLELLHMDLMGPMQKESFGGKR 758
EL H D+ GP +S +R
Sbjct: 68 CYELFHFDIWGPFSTQSIHNQR 3
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 47.0 bits (110), Expect = 6e-05
Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Frame = +3
Query: 542 ASSKEDRYF--DSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV---NSD 596
A+ + +Y+ DSGC+ HMT + + + + S V +GA +++G G ++ +S
Sbjct: 84 ATKQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSG 263
Query: 597 SPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMW 656
++++VL L +L+S+ QL V F C + D+N + V+ +
Sbjct: 264 YKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVLRAQMKARKFVL- 440
Query: 657 SPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITK 696
L G IT ++E+ K ++ K H + +KK I +
Sbjct: 441 -DLKNGYIT----DEDEKKKEYNFKEDHNDACVLKKFIKR 545
>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
partial (3%)
Length = 658
Score = 42.7 bits (99), Expect = 0.001
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
Frame = +2
Query: 27 DKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEILR 86
DK+ + E + ++W + D LG+ I NG+ ++F + + AKD W+ L
Sbjct: 134 DKDDETVAETRDRQKWDND-DYICLGH------ILNGMSDSLFDIYQSSPSAKDLWDKLE 292
Query: 87 VAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVR 146
+ R + + L + F N KM + ++V E ++ + N M E +V
Sbjct: 293 TRY---MREDATSKKFLVSHFNNYKMVDNKSVMEQLYEIERILNNYKQHNMNMDETIIVS 463
Query: 147 KILRSLSKRF-DMKVTAIEEAQDI 169
I+ L + D K T + +DI
Sbjct: 464 SIIDKLPPSWKDFKRTMKHKKEDI 535
>TC85757 similar to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (10%)
Length = 1087
Score = 34.3 bits (77), Expect = 0.39
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 287 SECATFLKKQGKGMVATWSDDD---SEEEEEPQIMGLTGKCNSEADSSDGEISEEE 339
S+ AT KK K + +DD SEEE++P K N++ DSSD + SE+E
Sbjct: 420 SKPATVAKKSMKDSSDSDDEDDDTSSEEEKKPVAAKKEDKMNADKDSSDSDESEDE 587
>AW257160 similar to GP|9757790|dbj| gene_id:MUA22.9~unknown protein
{Arabidopsis thaliana}, partial (12%)
Length = 764
Score = 32.7 bits (73), Expect = 1.1
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Frame = +3
Query: 141 EEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIA 200
E+ VRK SL++ F TA E+ + G + D + M + ++ K +
Sbjct: 291 EKVQVRKERASLAELFQRTKTANEDCIETG--VKDTQVKQAHKSPMHIMKKMLKMVHISS 464
Query: 201 FVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRKYRP-------NVTNKQSDII 253
NT EN++++ T +K +KV+R+F RK P +VT D I
Sbjct: 465 KSCNT----------SENIADSTTT-NKKLSKVLRKFHRKVHPEDTLNAKSVTKSHKDKI 611
Query: 254 KN 255
KN
Sbjct: 612 KN 617
>BG458197 similar to PIR|T45754|T457 hypothetical protein F24M12.270 -
Arabidopsis thaliana, partial (21%)
Length = 676
Score = 31.6 bits (70), Expect = 2.5
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = +2
Query: 310 EEEEEPQIMGLTGKCNSEADSSDGEISEEELAESYKLLLNKWEDACEMGKKLDETVKNLK 369
EEE PQI L+G N+ + + IS+ E K CE+ K LD + K+
Sbjct: 326 EEEASPQIQSLSGSVNNASVAQQHSISQVVKMEQDSCEYGK----CEITKSLDFSEKSQV 493
Query: 370 AEKQNLLITNGNL 382
+ + +T G++
Sbjct: 494 SXECTSXVTEGSV 532
>BQ154516
Length = 506
Score = 30.8 bits (68), Expect = 4.3
Identities = 18/74 (24%), Positives = 32/74 (42%), Gaps = 17/74 (22%)
Frame = +1
Query: 638 ENEEVVMIGIRSVDNCYMWSPL------SKGL-----------ITKCLVSKEEETKLWHK 680
+++++++ G+ D Y + PL SK L + S + WH
Sbjct: 235 DSKQILLEGVVGSDGLYQFKPLQFLPSMSKSLSYCNNATISSVVCNSSSSSNDSFNKWHC 414
Query: 681 KLGHLNPKSMKKII 694
+LGH NP +K I+
Sbjct: 415 RLGHANPNVVKSIL 456
>TC91471 similar to GP|8778257|gb|AAF79266.1| F12K21.21 {Arabidopsis
thaliana}, partial (39%)
Length = 804
Score = 30.8 bits (68), Expect = 4.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 468 YRQMPYSYPLSQKEINSRWRCHHCGKHGHIRPYCY 502
Y + +S P S++E W HC H YCY
Sbjct: 426 YCECCFSRPYSEREATQAWDIRHCDVHCWFYHYCY 530
>BF631997 weakly similar to GP|18542925|gb Putative pol polyprotein {Oryza
sativa}, partial (6%)
Length = 650
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -2
Query: 807 DHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEK 844
++G E +++F+E C +E I +++ T Q+NGV E+
Sbjct: 544 NNGLEICSAEFNELCKEEHITRQYTVRNTPQKNGVAER 431
>AW684891
Length = 539
Score = 30.0 bits (66), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = -3
Query: 801 IVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVE 843
I ++ S+ GK + + S+Y + G+ E + QQNGV E
Sbjct: 252 IERLCSNKGKVYVDQNLSQYLEENGVSQELKCVNSPQQNGVSE 124
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 686
Score = 30.0 bits (66), Expect = 7.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 803 KIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVE 843
+I +D+G F ++KF E+C + I+ ++P Q NG E
Sbjct: 670 EIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAE 548
>TC85573 homologue to GP|15824574|gb|AAL09401.1 ribosomal protein {Petunia x
hybrida}, partial (95%)
Length = 866
Score = 29.6 bits (65), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 10/37 (27%)
Frame = +1
Query: 492 GKHGHIRPYCY----------RLYRTPQHWKPTQKNV 518
GK GH+ P+C R ++TP W TQK++
Sbjct: 52 GKEGHLLPWCLVPNSARGFNCRFHQTPSSWLSTQKSL 162
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.339 0.147 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,068,037
Number of Sequences: 36976
Number of extensions: 630568
Number of successful extensions: 4795
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 2008
Number of HSP's gapped (non-prelim): 3091
length of query: 1558
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1449
effective length of database: 4,984,343
effective search space: 7222313007
effective search space used: 7222313007
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0192.13