TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0191.8
         (1758 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...   255  9e-68
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   228  2e-59
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ...    99  2e-36
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At...   110  4e-35
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...   144  4e-34
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...   135  1e-31
TC83226 weakly similar to PIR|G86419|G86419 probable reverse tra...   120  6e-27
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...    97  4e-20
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At...    96  9e-20
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re...    93  8e-19
BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-li...    66  5e-18
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    87  6e-17
BG586862                                                               87  7e-17
BG646730                                                               86  1e-16
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    72  2e-15
TC93101                                                                77  8e-14
BQ148771                                                               75  2e-13
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot...    57  7e-13
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro...    58  1e-11
BF631765                                                               69  2e-11

>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score =  255 bits (652), Expect = 9e-68
 Identities = 119/225 (52%), Positives = 159/225 (69%)
 Frame = +2

Query: 748 WLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPN 807
           WLK+GDKNT FFH KA+QR+K N I +++D+ GNW   ++ V      YF  +F SS P 
Sbjct: 5   WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184

Query: 808 NIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLV 867
            IEE C+ ++ KL+ E     E+EFT +EV  A+NQMHP+KAPGPDG PALF+QKYW +V
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364

Query: 868 GGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIAN 927
           G +V   VL++LN  ++   LN+TFI LIPK K P  P ++RPISLCNV+MK++TK IAN
Sbjct: 365 GKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIAN 544

Query: 928 RIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKK 972
           R+K  L +V+  +QSAF+ GRLITDNAL  + V    + +RKGK+
Sbjct: 545 RVKQTLPDVIDVEQSAFVQGRLITDNALIAWSVSIG*RXRRKGKR 679


>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
            {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  228 bits (581), Expect = 2e-59
 Identities = 112/255 (43%), Positives = 158/255 (61%)
 Frame = -3

Query: 907  EFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKK 966
            E+R I+ CN   K++ K ++ R++ +L  ++   QSAF+PGR I+DN L   ++ HY+++
Sbjct: 772  EYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYLRQ 593

Query: 967  KRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGE 1026
                K   MA+K DM+KAYDRI W+FL++VLT +GF       I  CVS+VSYS L+NG 
Sbjct: 592  SGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLINGG 413

Query: 1027 PSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFA 1086
            P     P RGLRQGDPLSPYLFILC E  SGL    +R   L G+KVAR  PPINHL FA
Sbjct: 412  PQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLLFA 233

Query: 1087 DDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVK 1146
            DD++ F ++     + LL ++ +Y  ASG+ +N  KS I+FS    Q  +D ++  + + 
Sbjct: 232  DDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKTSQAIIDRVKGELKIA 53

Query: 1147 AVIVHDKYLGLPTVI 1161
                  KYLG   ++
Sbjct: 52   KEGGTGKYLGYRNIL 8


>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
           thaliana, partial (17%)
          Length = 677

 Score = 98.6 bits (244), Expect(2) = 2e-36
 Identities = 48/136 (35%), Positives = 71/136 (51%)
 Frame = +2

Query: 725 MENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVY 784
           ++ +  E    EE YW+Q+SR  W   GD N  F+H    QR  +NRI  + D  GNW+ 
Sbjct: 8   LKEKLQEAYKDEEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWIT 187

Query: 785 KQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQM 844
           ++  V     +YFE +F+ + P   +    +I + +  +M + L    T +EV  AL  M
Sbjct: 188 EEQGVEKVAVDYFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIM 367

Query: 845 HPLKAPGPDGFPALFY 860
           HP KAPGPDG   L +
Sbjct: 368 HPEKAPGPDGMTTLLF 415



 Score = 74.3 bits (181), Expect(2) = 2e-36
 Identities = 38/89 (42%), Positives = 50/89 (55%)
 Frame = +3

Query: 859 FYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIM 918
           F+Q  W ++  D+   V   L  G     LN T ICLIPK K P    E RPISLCNV  
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590

Query: 919 KLVTKCIANRIKDVLGEVVGEQQSAFIPG 947
           K+++K +  R+K  L  ++ E QSAF+ G
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFVHG 677


>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
           [imported] - Arabidopsis thaliana, partial (16%)
          Length = 794

 Score =  110 bits (275), Expect(2) = 4e-35
 Identities = 59/192 (30%), Positives = 96/192 (49%)
 Frame = +3

Query: 702 LEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHG 761
           L+ R    + +N  EE  + R E+  E+      EE++W Q+SR  WL+ GD+NT FFH 
Sbjct: 33  LQDRRGNTKLFNKGEELSLLRSELNEEYHN----EEIFWMQKSRLNWLRSGDRNTKFFHA 200

Query: 762 KANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLN 821
               R+ QNRI  + DD     + ++ +     ++F+ ++ S       E    I   + 
Sbjct: 201 VTKNRRAQNRILSLIDDDDKEWFVEEDLGRLADSHFKLLYSSEDVGITLEDWNSIPAIVT 380

Query: 822 QEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNK 881
           +E    L  + + +EV  A+  ++P K PGPDG    F+Q++W  +G D+TS   E L  
Sbjct: 381 EEQNAQLMAQISREEVREAVFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLRT 560

Query: 882 GVDPASLNQTFI 893
           G     +N+T I
Sbjct: 561 GKLEEGINKTNI 596



 Score = 58.2 bits (139), Expect(2) = 4e-35
 Identities = 29/61 (47%), Positives = 42/61 (68%)
 Frame = +1

Query: 895 LIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNA 954
           L+PK    +  +EFRPISLCNV  K+V+K ++ R+K VL  ++ E Q+AF   +LI+DN 
Sbjct: 601 LVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQAAFGRRQLISDNI 780

Query: 955 L 955
           L
Sbjct: 781 L 783


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
            (69%)
          Length = 616

 Score =  144 bits (362), Expect = 4e-34
 Identities = 74/200 (37%), Positives = 113/200 (56%)
 Frame = +3

Query: 831  EFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQ 890
            EFTA EV  AL  M   KAPG DG+   F++  W ++G  V   +L+    G  P  +N 
Sbjct: 21   EFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINC 200

Query: 891  TFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLI 950
            T++ L+PK     +   FRPI+ C+VI K+++K + +R++ VL  VV E QSAF+ GR+I
Sbjct: 201  TYVTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVI 380

Query: 951  TDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELI 1010
             DN +   E+       RKG      +K+D+ KAYD  EW F+K ++  +GFP K    +
Sbjct: 381  FDNIILSHEL--VKSYSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNWV 554

Query: 1011 SICVSSVSYSLLVNGEPSPP 1030
               +++ SY+   NG+ + P
Sbjct: 555  MAXLTTASYTFNXNGDLTXP 614


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
            {Oryza sativa}, partial (9%)
          Length = 708

 Score =  135 bits (340), Expect = 1e-31
 Identities = 62/114 (54%), Positives = 84/114 (73%)
 Frame = +1

Query: 1033 PQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIF 1092
            P++GLRQGDPLSPYLFILC    SGL+  +   +NLHGI+VAR  P I HL FADDSL+F
Sbjct: 4    PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183

Query: 1093 SRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVK 1146
            +RA   EA++++ V+  Y+ ASGQLVN +KSE+S+S+NVP    + I  ++ +K
Sbjct: 184  ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMICQQIAIK 345



 Score = 54.3 bits (129), Expect(2) = 3e-08
 Identities = 27/76 (35%), Positives = 42/76 (54%)
 Frame = +3

Query: 1365 VSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYY 1424
            V +L  ++   WN   I   FN   A  I  I LS R  EDK+IW W +DG++SV+SA++
Sbjct: 402  VDELIDYDTKQWNRDLIFHSFNNYAAHQIIKIPLSMRQPEDKIIWHWEKDGIYSVRSAHH 581

Query: 1425 QIQSQKIAATASGSNS 1440
             +  +  +  A  S++
Sbjct: 582  ALCDENFSNQAESSSA 629



 Score = 23.5 bits (49), Expect(2) = 3e-08
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 1445 WKTLWRVKIQNKVKHFMYRV 1464
            WK +W       V++F++R+
Sbjct: 644  WKAIWNTPASRSVQNFLWRL 703


>TC83226 weakly similar to PIR|G86419|G86419 probable reverse transcriptase
            100033-105622 [imported] - Arabidopsis thaliana, partial
            (2%)
          Length = 885

 Score =  120 bits (300), Expect = 6e-27
 Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 15/296 (5%)
 Frame = +3

Query: 1408 IWRWSRDGMFSVKSAYYQI---QSQKIAATASGSNSPSFSWKTLWRVKIQNKVKHFMYRV 1464
            +W  +  G++SVKS Y  +   Q+Q+I  T++ S+  +  WK +W +    + K  ++R+
Sbjct: 3    MWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDE-TLIWKKIWSLHTIPRHKVLLWRI 179

Query: 1465 INNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGLRMD-LV 1523
            +N+  P R++L +RGIQ    C  C     ET  HLF+ C  ++  WF  +L +  D L 
Sbjct: 180  LNDSLPVRSSLRKRGIQCYPLCPRC-HSKTETITHLFMSCPLSKRVWFGSNLCINFDNLP 356

Query: 1524 QTSFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATAMEKAQNLLAEW 1583
              +F+  L      +++ I   +    + +W ARN S+  +  +     +++A N ++++
Sbjct: 357  NPNFIN*LYEAIL*KDECITI*IAAIIYNLWHARNLSVLEDQTILEMDIIQRASNCISDY 536

Query: 1584 KEAQEHHAPCV--------QEKRP---QQWSAPSQGRIKINVDAGWSGPHSTGLGFVARD 1632
            K+A     P +         + RP    +W  P+ G +K+N DA        GLG + RD
Sbjct: 537  KQANTQAPPSMARTGYDPRSQHRPAKNTKWKRPNLGLVKVNTDANLQNHGKWGLGIIIRD 716

Query: 1633 HRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAMR 1688
              G++M A T         L AEA AL   +  A +     V F+ D+  ++K ++
Sbjct: 717  EVGLVMAASTWETDGNDRALEAEAYALLTGMRFAKDCGFXKVXFEGDNEKLMKMVK 884


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
            Arabidopsis thaliana, partial (6%)
          Length = 951

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 91/340 (26%), Positives = 154/340 (44%), Gaps = 13/340 (3%)
 Frame = +2

Query: 888  LNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPG 947
            +N TFI LIPKV  P+   +FRPISL   + K++ K +ANR++ V+G V+ + QSAF+  
Sbjct: 50   INSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIGSVISDAQSAFVKN 229

Query: 948  RLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTT-------- 999
            R I +          ++ + R     +M L+ +  K +  + W  LK+++T         
Sbjct: 230  RQILEMV--------FL*QMRL----WMRLR-N*RKIFCCLRW-ILKRLITLSIGLIWIL 367

Query: 1000 ----MGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAF 1055
                M F     + I  CVS+ + S+LVNG P+                           
Sbjct: 368  F*VGMSFLVLWRKWIKECVSTATTSVLVNGSPTNVL-----------------------M 478

Query: 1056 SGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASG 1115
              L+  Q+  R   G+        ++HL FA+D+L+          +L   +  +   SG
Sbjct: 479  KSLVQTQLFTRYSFGVV---NPVVVSHLQFANDTLLLETKNWANIRALRAALVIF*AMSG 649

Query: 1116 QLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGK-IQE 1174
              VN  KS +    N+  + +    + +  K   V   YLG+P + G+S++  F + I  
Sbjct: 650  LKVNFHKSGL-VCVNIAPSWLSEAASVLSWKVGKVPFLYLGMP-IEGNSRRLSFWEPIVN 823

Query: 1175 RVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKL 1214
            R+  +L GW  + LS  G+ +L+K+V  ++  Y +   KL
Sbjct: 824  RIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYALPSSKL 943


>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
            [imported] - Arabidopsis thaliana, partial (10%)
          Length = 767

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
 Frame = -3

Query: 1300 LKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDP--W-----LPGPDSGYV 1352
            L A +G   SYAWRS+      I++G K  IGNG+  +IW+    W        P+    
Sbjct: 762  LNAPLGSWASYAWRSIHSAQHLIKQGAKVIIGNGENTNIWEREMAWKLTCVTNHPNKHSS 583

Query: 1353 RTQDVPE-FAHEKV-SDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWR 1410
            R    P  + +E   SD  +    + N+  I+ +F     + I SI       ED   W 
Sbjct: 582  RAY*APTLYGYEGCRSDDPMRRERNANL--INSIFPEGTRRKILSIHPQGPIGEDSYSWE 409

Query: 1411 WSRDGMFSVKSAYYQIQSQKIAATASGS-NSPSFS--WKTLWRVKIQNKVKHFMYRVINN 1467
            +S+ G +SVKS YY   +   AA   G+ + PS    ++ +W+     KV+HF++R I+N
Sbjct: 408  YSKSGHYSVKSGYYVQTNIIAAANQRGTVDQPSLDDLYQRVWKYNTSPKVRHFLWRCISN 229

Query: 1468 LTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAW 1511
              P  AN+  R I     C+ C  +  ET +H+  QC +AR  W
Sbjct: 228  SLPTAANMRSRHISKDGSCSRCGME-SETVNHILFQCPYARLIW 100


>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
           reverse transcriptase {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 798

 Score = 93.2 bits (230), Expect = 8e-19
 Identities = 64/269 (23%), Positives = 123/269 (44%), Gaps = 13/269 (4%)
 Frame = -1

Query: 518 WDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQG 577
           W  +  ++ +    W C GDFN I  + E +G        M  F +  +   L  +  +G
Sbjct: 783 WSAISNIQTQHKLSWCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFHLPTRG 604

Query: 578 DPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPIE 637
             FTW NGR+   + ++RLDR +++Q   +   + S   L +  SDH P+L  + +Q I+
Sbjct: 603 SAFTWTNGRRGRNNTRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILFELQTQNIQ 424

Query: 638 EGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNA-----EQKLAQAKETIMAL-ETE 691
                    F+F +  + + +    ++Q W +           QKL   KE +    +  
Sbjct: 423 FSSS-----FKFMKMWSAHPDCINIIKQCWANQVVGCPMFVLNQKLKNLKEVLKVWNKNT 259

Query: 692 FGSIR-------KKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRS 744
           FG++        K+L D++ ++ +      ++  + + K  +      +  EE++W ++S
Sbjct: 258 FGNVHSQVDNAYKELDDIQVKIDSI---GYSDVLMDQEKAAQLNLESALNIEEVFWHEKS 88

Query: 745 RATWLKEGDKNTSFFHGKANQRQKQNRIA 773
           +  W  EGD+NT+FFH  A  ++  + I+
Sbjct: 87  KVNWHCEGDRNTAFFHRVAKIKRTSSLIS 1


>BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (7%)
          Length = 774

 Score = 65.9 bits (159), Expect(2) = 5e-18
 Identities = 37/105 (35%), Positives = 60/105 (56%)
 Frame = +2

Query: 384 RIGGAGRPALPGAMKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNI 443
           RIG + R +   ++  + WNC+G+GS  TV+ L+     + PDI+FLMET +K+ ++  +
Sbjct: 167 RIGFSSR-SKSSSLVNMCWNCQGIGSDLTVRRLREFQTKDSPDIMFLMETKRKDEDVYKM 343

Query: 444 VARLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHI 488
                F NH  V   G      GGLAL WK++  ++I++ S + I
Sbjct: 344 YRGTEFTNHFTVPPVG----LSGGLALSWKDNVQVEILASSANVI 466



 Score = 45.1 bits (105), Expect(2) = 5e-18
 Identities = 17/44 (38%), Positives = 27/44 (60%)
 Frame = +3

Query: 507 GYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGG 550
           G P+ +++ K WD L  +  +  G W+  GDFN++  N+EK GG
Sbjct: 519 GVPQPEHRAKFWDELSTIGAQRDGAWLLTGDFNDLLDNSEKVGG 650


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
            partial (1%)
          Length = 441

 Score = 87.0 bits (214), Expect = 6e-17
 Identities = 48/127 (37%), Positives = 70/127 (54%)
 Frame = +3

Query: 1032 SPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLI 1091
            S QRGL+QGDPL+P+LF+L  E  SGL+ N +      G  V RG   ++HL +ADD+L 
Sbjct: 15   SVQRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLC 194

Query: 1092 FSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVH 1151
                T +   +L  +++ +E ASG  VN  KS +    NVP+  M+     +  +   + 
Sbjct: 195  IGMPTVDNLWTLKALLQGFEMASGLKVNFHKSSL-IGINVPRDFMEAACRFLNCREESIP 371

Query: 1152 DKYLGLP 1158
              YLGLP
Sbjct: 372  FIYLGLP 392


>BG586862 
          Length = 804

 Score = 86.7 bits (213), Expect = 7e-17
 Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 1/238 (0%)
 Frame = -1

Query: 1443 FSWKTLWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFL 1502
            F  + +W +K   + K F++R+++N  P +  L +RGI+    C  C +  +ET  HLFL
Sbjct: 669  FIREKVWGIKTIPRHKSFLWRLLHNALPVKDELHKRGIRCSLLCPRC-ESKIETVQHLFL 493

Query: 1503 QCSWARAAWFHHSLGLRMDLVQT-SFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESL 1561
             C   +  WF   LG+         F +W+ +F    ++E +  +    ++IW ARN+ +
Sbjct: 492  NCEVTQKEWFGSQLGINFHSSGVLHFHDWITNFILKNDEETIIALTALLYSIWHARNQKV 313

Query: 1562 FNNVQVHPATAMEKAQNLLAEWKEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGP 1621
            F N+ V     +++A + L  +K AQ      V +      + PS           W   
Sbjct: 312  FENIDVPGDVVIQRASSSLHSFKMAQ------VSDSVLPSNAIPSYSL--------W--- 184

Query: 1622 HSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLD 1679
               G+G VAR+  G+ M +GT L         AEA    W ++ A+  + D    K +
Sbjct: 183  ---GIGVVARNCEGLAMASGTWLRHGIPCATTAEA----WGIYQAMVFAGDCGFSKFE 31


>BG646730 
          Length = 799

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
 Frame = +1

Query: 1304 VGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVPEFAHE 1363
            +G QPSYAWRS++     I+ G +WSI NG+ V IWKD WLP   +G+     + +F   
Sbjct: 385  IGNQPSYAWRSMFNIKDVIDLGSRWSISNGQNVRIWKDDWLPN-QTGFKVCSPMVDFEEA 561

Query: 1364 K-VSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSA 1422
              +S+L      S     +  +F+  EA+ I +I LSWR   D+ I  W RD  +SV+SA
Sbjct: 562  TCISELIDTNTKSSKRDLVRNVFSAFEAKQILNIPLSWRLWPDRRILYWERDRNYSVRSA 741

Query: 1423 YYQIQ-SQKIAATASGSN 1439
            ++ I+ + K +   S SN
Sbjct: 742  HHLIKVATKDSPEVSSSN 795


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
            {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 72.4 bits (176), Expect(2) = 2e-15
 Identities = 34/70 (48%), Positives = 45/70 (63%)
 Frame = +2

Query: 1012 ICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGI 1071
            +CV S  Y +LVN +   P  P RGL+QGD LSPY+FI+CVE  S LI +     + HG 
Sbjct: 101  MCVESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLIPHAKERGDTHGT 280

Query: 1072 KVARGAPPIN 1081
             + RGAPP++
Sbjct: 281  SI*RGAPPVS 310



 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 38/107 (35%), Positives = 59/107 (54%)
 Frame = +3

Query: 1075 RGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQT 1134
            RGA P+  L F    L   R  +  A  + +++  YE+ SG+ +++ KS I  SRNVP  
Sbjct: 258  RGAIPMA-LLFEGAPLRSLRVEEHHAQIMKNILILYEEDSGKAISLRKS*IYCSRNVPDI 434

Query: 1135 SMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLK 1181
               +I   +GV+ ++   KYLGLP++IG  +   F  I+  VW+K K
Sbjct: 435  LKTSITYILGVQFMLGTCKYLGLPSMIGRDRTTTFSSIKGGVWQKNK 575



 Score = 30.0 bits (66), Expect(2) = 2e-15
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +1

Query: 979  LDMSKAYDRIEWDFLKQVLTTMGFPSK 1005
            L +SK Y+R++ D+LK+++  MGF ++
Sbjct: 1    LYISKVYNRVD*DYLKEIMIKMGFNNR 81


>TC93101 
          Length = 675

 Score = 76.6 bits (187), Expect = 8e-14
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 18/191 (9%)
 Frame = -1

Query: 1470 PCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGLRM-DLVQTSFL 1528
            P R  L +RG+     C  C  ++ ET +H+F+ C   +  WF   L +R  D    +F 
Sbjct: 660  PVRXELNKRGVNCPPLCPRCYFNL-ETTNHIFMSCERTQRVWFGSQLSIRFPDNSTINFS 484

Query: 1529 EWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATAMEKAQNLLAEWKEA-- 1586
            +WL    +NQ +EI+ ++   T++IW ARN+++F N  V   T ++ AQN +  +++A  
Sbjct: 483  DWLFDAISNQTEEIIIKISAITYSIWHARNKAIFENQFVSEDTIIQ*AQNSILAYEQATI 304

Query: 1587 ---------------QEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHSTGLGFVAR 1631
                              +    +     +W  P    +K N DA        GLG + R
Sbjct: 303  KPQNPNIVLSSLSATSNTNTTRRRSNVRSRWQKPLNNILKANCDANLQVQGRWGLGCIIR 124

Query: 1632 DHRGIIMLAGT 1642
            +  G   +  T
Sbjct: 123  NADGEAKVTAT 91


>BQ148771 
          Length = 680

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 42/130 (32%), Positives = 63/130 (48%)
 Frame = -3

Query: 1164 SKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIE 1223
            +KK+ F  +  +V   L  WK   LS A +  L K+V +A+P Y M    +P     +I+
Sbjct: 618  TKKSRFS-VYYQVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQ 442

Query: 1224 SLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKS 1283
             L   F WG  E  R+ H   W+ + K K    LG R L+  N+A + K  W + +   S
Sbjct: 441  KLQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNS 262

Query: 1284 LLYKVWKAKY 1293
            L  +V + KY
Sbjct: 261  LCTEVMRGKY 232


>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
            dioxygenase1 {Pisum sativum}, partial (43%)
          Length = 1865

 Score = 57.4 bits (137), Expect(2) = 7e-13
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 26/223 (11%)
 Frame = -2

Query: 1308 PSYAWRSVWGTLKFIEE--GCKW-------SIGNGKKVSIWKDPWLPGPDSGYVRTQDVP 1358
            P+YA R  W  L  +EE    +W        +G+G+    WKD W    DS     +  P
Sbjct: 790  PAYASRW-WKDLMSLEEVGRVRWFPRELIRKVGDGRSSFFWKDAW----DSSVPLRESFP 626

Query: 1359 E----FAHEKVSDLRLW----EGGSWNIS-KIDQLFNPAEAQLIKSI-RLSW---RDSED 1405
                 +   K+    LW    EG  W +  +  +LF   + +L++ + RL     R   D
Sbjct: 625  RAFFPYRLLKMGCGDLWDMNAEGVRWRLYWRRLELFEWEKERLLELLGRLEGVVLRYWAD 446

Query: 1406 KLIWRWSRDGMFSVKSAYYQIQSQKIAATASGSNSPSFSWKTLWRVKIQNKVKHFMYRVI 1465
              +W+  ++G+FSV S Y+ +Q+ ++      S      ++ LW+ K   KV  F + + 
Sbjct: 445  IWVWKPDKEGVFSVNSCYFLLQNLRLLEDRL-SYEEEVIFRELWKSKAPAKVLAFSWTLF 269

Query: 1466 NNLTPCRANLARR---GIQIQEQCALCS-QDVVETQDHLFLQC 1504
             +  P   NL +R    ++  ++C  C  QD  ET  HLFL C
Sbjct: 268  LDRIPTMVNLGKRRLLRVEDSKRCVFCGCQD--ETVVHLFLHC 146



 Score = 36.2 bits (82), Expect(2) = 7e-13
 Identities = 19/48 (39%), Positives = 28/48 (57%)
 Frame = -3

Query: 1249 CKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPK 1296
            C  + +G LG R++   N +LLAK  WRLL  + SL  +V +  Y P+
Sbjct: 969  CLPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYGPR 826


>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
            reverse transcriptase {Oryza sativa (japonica
            cultivar-group)}, partial (2%)
          Length = 621

 Score = 57.8 bits (138), Expect(2) = 1e-11
 Identities = 24/62 (38%), Positives = 38/62 (60%)
 Frame = +2

Query: 1283 SLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDP 1342
            SLL K+ K KYFP+ D   A +G+ PS+ WRS+  T   +  G +W IG+G ++++    
Sbjct: 410  SLLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQSLLTLGHRWMIGDGSQINVSSMS 589

Query: 1343 WL 1344
            W+
Sbjct: 590  WI 595



 Score = 31.6 bits (70), Expect(2) = 1e-11
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +3

Query: 1245 WQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLN 1279
            + +L + K+ G LG +N ++FN ++L KQ W+LL+
Sbjct: 303  FNNLARHKSVGGLGLQN-QEFNISMLGKQRWKLLS 404


>BF631765 
          Length = 498

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 43/138 (31%), Positives = 60/138 (43%)
 Frame = +1

Query: 1523 VQTSFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATAMEKAQNLLAE 1582
            VQ   L W++   A  E  +        W IWK RN+ +FNNV   P       +     
Sbjct: 49   VQLDLLSWMEKCLAVPEQRVKQLFGTSLWLIWKHRNQKVFNNVDFDPPLVSALVEEFSIA 228

Query: 1583 WKEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHSTGLGFVARDHRGIIMLAGT 1642
                +      V   +P     P  G IK+NV AG  G  STG GF+AR+  G+ + A T
Sbjct: 229  NLPLKRGQVCVVPR*QP-----PPFGSIKVNVGAGCFGDGSTGWGFIARNAAGLALSAET 393

Query: 1643 CLEAQRLDPLIAEAMALR 1660
              +     PL+AE + L+
Sbjct: 394  KSDGISYSPLLAECLLLK 447


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.329    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,637,926
Number of Sequences: 36976
Number of extensions: 960936
Number of successful extensions: 6072
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 4412
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 4860
length of query: 1758
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1648
effective length of database: 4,947,367
effective search space: 8153260816
effective search space used: 8153260816
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 65 (29.6 bits)