BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0191.7
(680 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90124 similar to GP|17529304|gb|AAL38879.1 putative transcript... 392 e-109
TC91822 similar to PIR|E96612|E96612 probable transcription fact... 270 2e-72
TC91938 similar to PIR|E96612|E96612 probable transcription fact... 249 2e-66
BE326165 similar to GP|9758330|dbj| contains similarity to nucle... 82 9e-16
TC86748 similar to GP|15485584|emb|CAC67503. SET-domain-containi... 72 9e-13
TC89006 weakly similar to GP|20466308|gb|AAM20471.1 unknown prot... 64 2e-10
AL386496 52 1e-06
TC78312 similar to GP|19698885|gb|AAL91178.1 putative protein {A... 44 2e-04
AJ497196 weakly similar to SP|O60683|PEXA_ Peroxisome assembly p... 44 2e-04
TC89939 similar to GP|15289911|dbj|BAB63606. hypothetical protei... 43 3e-04
BF004323 similar to GP|4337011|gb| zinc-binding peroxisomal inte... 41 0.001
TC79652 weakly similar to GP|19698951|gb|AAL91211.1 unknown prot... 40 0.002
TC88306 similar to GP|21593124|gb|AAM65073.1 unknown {Arabidopsi... 40 0.002
TC79817 similar to GP|22795037|gb|AAN05420.1 putative RING prote... 40 0.002
TC89100 similar to GP|21553849|gb|AAM62942.1 putative RING zinc ... 40 0.003
AW689612 weakly similar to GP|19698963|gb| unknown protein {Arab... 40 0.003
TC79248 similar to GP|22165059|gb|AAM93676.1 unknown protein {Or... 39 0.005
TC89577 similar to GP|22795037|gb|AAN05420.1 putative RING prote... 39 0.007
TC79052 similar to GP|22795037|gb|AAN05420.1 putative RING prote... 39 0.009
TC79053 similar to GP|22795037|gb|AAN05420.1 putative RING prote... 39 0.009
>TC90124 similar to GP|17529304|gb|AAL38879.1 putative transcription factor
{Arabidopsis thaliana}, partial (34%)
Length = 1315
Score = 392 bits (1008), Expect = e-109
Identities = 187/244 (76%), Positives = 210/244 (85%), Gaps = 7/244 (2%)
Frame = +2
Query: 317 SGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPESGVRY 376
SGGRDLSGNKRTNK QSFDQ+FENMNEALRLSCRKGYPVRVVRSHKEKRS+YAPE+GVRY
Sbjct: 2 SGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSAYAPEAGVRY 181
Query: 377 DGVYRIEKCWRKNGIQ---VCRYLFVRCDNEPAPWTTDDVGDRPRPLPKIDELKGAVDIT 433
DGVYRIEKCWRK GIQ VCRYLFVRCDNEPAPWT+D GDRPRPLP I E KGA+DIT
Sbjct: 182 DGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPIIKEFKGAIDIT 361
Query: 434 ERKGDPSWDFDEEKGSWLWKKPPPASKKSIDVINPKDGTRVRV--KKTKNVS--LKEKLL 489
ERKGDPSWDFDEEKG WLWKKPPP SKK +++++P DG++++V KTK VS +K++LL
Sbjct: 362 ERKGDPSWDFDEEKGCWLWKKPPPRSKKPVNIVDPVDGSKIKVVRPKTKKVSFKIKDRLL 541
Query: 490 KEFGCNICHKVLSSPLTTPCAHNFCKVCLEGAFSGKSFIRKRACEGGRSLRAQKNVMKCP 549
KEFGCNIC K L+SPLTTPCAHNFCK CLEGAFSG+S+IR RA + GR+LR QK + P
Sbjct: 542 KEFGCNICRKGLASPLTTPCAHNFCKACLEGAFSGQSYIRNRASQSGRALRTQKEHYEMP 721
Query: 550 SCSN 553
N
Sbjct: 722 YLFN 733
Score = 106 bits (264), Expect = 3e-23
Identities = 65/124 (52%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Frame = +3
Query: 542 QKNVMKCPSCSNDIADFLQNPQVNREMMGVVESLQSQIAQDENSEQVENSEELSDKSDEI 601
+KN+MKCP+CS DIAD+LQNPQVNREMMGV+ESL + + EE S KSDE
Sbjct: 699 KKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLSAY----RLNRWRRVXEESSVKSDEN 866
Query: 602 VKNVPD-EVEVSKPCDDSTESDENVKNVTDEVEVLKSCDSTEKVLEEINDNDLNRPHKRR 660
+K PD E EVSKP CDS+EKVL+EIN NDLN P KRR
Sbjct: 867 LK--PDEETEVSKP-----------------------CDSSEKVLKEINKNDLNPPQKRR 971
Query: 661 KGAG 664
KG G
Sbjct: 972 KGTG 983
Score = 36.6 bits (83), Expect = 0.032
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 126 CSFCMQLPDRPVTTPCGHNFCLKCFE 151
C+ C + P+TTPC HNFC C E
Sbjct: 554 CNICRKGLASPLTTPCAHNFCKACLE 631
>TC91822 similar to PIR|E96612|E96612 probable transcription factor
F12K22.14 [imported] - Arabidopsis thaliana, partial
(22%)
Length = 761
Score = 270 bits (689), Expect = 2e-72
Identities = 130/192 (67%), Positives = 149/192 (76%), Gaps = 4/192 (2%)
Frame = +1
Query: 293 AQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCRKG 352
AQSV LSGGY DEDHGEWF YTGSGGR+ Q D +F N NEALRLSCRKG
Sbjct: 1 AQSVVLSGGYTQDEDHGEWFTYTGSGGRN----------QFLDHQFNNTNEALRLSCRKG 150
Query: 353 YPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWR---KNGIQVCRYLFVRCDNEPAPWT 409
YPVRVVRSHKEK+SSYAPE+GVRYDGVYRI+ CW KNG +VCRYLFVRCDNEPAPWT
Sbjct: 151 YPVRVVRSHKEKQSSYAPEAGVRYDGVYRIDICWSEFGKNGEKVCRYLFVRCDNEPAPWT 330
Query: 410 TDDVGDRPRPLPKIDELKGAVDITERKGDPSWDFDEEKGSWLWKKPPPASKKSIDVINP- 468
+D GD PR LP I+E + AVDI ER GDPSWDFDEEKG WLWKKPPP SK+ +++++P
Sbjct: 331 SDLSGDYPRTLPFIEEFRDAVDIIERNGDPSWDFDEEKGCWLWKKPPP*SKRPLNIVDPI 510
Query: 469 KDGTRVRVKKTK 480
++ +K+TK
Sbjct: 511 ENALNPPLKRTK 546
>TC91938 similar to PIR|E96612|E96612 probable transcription factor
F12K22.14 [imported] - Arabidopsis thaliana, partial
(11%)
Length = 685
Score = 249 bits (637), Expect = 2e-66
Identities = 118/186 (63%), Positives = 141/186 (75%), Gaps = 4/186 (2%)
Frame = +3
Query: 11 GTCMLCKLKPPPSETLQCHTCITPWHLPCLPTPPAS--FVNWDCPDCSSSISDFHAPAPA 68
G CM+CK KP +ETL C TC TPWH PCLP P + ++W CPDC+ SD A + A
Sbjct: 93 GVCMVCKQKPSETETLHCKTCTTPWHAPCLPVVPTTSEMLDWLCPDCAQP-SDVVAASAA 269
Query: 69 PSAGADLVSAIRAIDSDASLTDQQKAKKKQELVGGP--SSGEKPPAAGGILDIFDGSINC 126
PS DLVSAIRAI++D SLT+++K KK+QEL GG E G+LDIFDGS+NC
Sbjct: 270 PSVAGDLVSAIRAIENDPSLTEEEKRKKRQELHGGSLKEKDEVHVRRSGVLDIFDGSLNC 449
Query: 127 SFCMQLPDRPVTTPCGHNFCLKCFEKWIGQGKRTCANCRRDIPAKIASQPRINSQLAIAI 186
SFC++LP+RPVTTPCGHNFCLKCFEKW+G GKRTC+NCR IP K+AS PRIN+QLAIAI
Sbjct: 450 SFCVKLPERPVTTPCGHNFCLKCFEKWVGLGKRTCSNCRTAIPPKMASNPRINAQLAIAI 629
Query: 187 RLAKLA 192
R+AKLA
Sbjct: 630 RMAKLA 647
Score = 40.0 bits (92), Expect = 0.003
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 494 CNICHKVLSSPLTTPCAHNFCKVCLEGAFSGKSFIRKRACEGGRS 538
C+ C K+ P+TTPC HNFC C E + KR C R+
Sbjct: 447 CSFCVKLPERPVTTPCGHNFCLKCFEKWVG----LGKRTCSNCRT 569
>BE326165 similar to GP|9758330|dbj| contains similarity to nuclear protein
95~gene_id:MIJ24.3 {Arabidopsis thaliana}, partial (6%)
Length = 572
Score = 81.6 bits (200), Expect = 9e-16
Identities = 55/167 (32%), Positives = 73/167 (42%), Gaps = 2/167 (1%)
Frame = +1
Query: 20 PPPSETLQCHTCITPWHLPCLPTPPASFVNWDCPDCSSSISDFHAPAPAPSAGADLVSAI 79
P P + +TPW+LPC P ++ CP+CS S
Sbjct: 64 PLPRRIFRSSLPLTPWYLPCCPP----MIDGKCPNCSYDPS------------------- 174
Query: 80 RAIDSDASLTDQQKAKKKQELVGGPS--SGEKPPAAGGILDIFDGSINCSFCMQLPDRPV 137
TD++ E+VGG S + E +LD + CSFC++LPDRPV
Sbjct: 175 ---------TDEE------EIVGGSSKPTTETNDENDDVLDNY-----CSFCIELPDRPV 294
Query: 138 TTPCGHNFCLKCFEKWIGQGKRTCANCRRDIPAKIASQPRINSQLAI 184
TTPCGHNFCL + + K+AS PRIN+QLAI
Sbjct: 295 TTPCGHNFCLNVLRNG*NKESKLAQIVGLQFQQKLASTPRINTQLAI 435
Score = 55.1 bits (131), Expect = 9e-08
Identities = 39/108 (36%), Positives = 47/108 (43%)
Frame = +3
Query: 145 FCLKCFEKWIGQGKRTCANCRRDIPAKIASQPRINSQLAIAIRLAKLAKSEGKVSGEPKI 204
F LKCF+KW+ QGK+TC NCR IP K + N L + KV E +
Sbjct: 315 FLLKCFKKWMKQGKQTCPNCRTTIPTK-TGEYSTNQHTIGNSPCVWLN*PDRKVLEEVLL 491
Query: 205 YHFMRNQDRPDKAFTTDRAKKTGKANACSGKIFVTVPPDHFGPIPAEN 252
F+ A TT VT+P DHFGPI AEN
Sbjct: 492 QKFI--------ALTTT-------------PFLVTIPKDHFGPIVAEN 572
Score = 34.3 bits (77), Expect = 0.16
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 494 CNICHKVLSSPLTTPCAHNFC 514
C+ C ++ P+TTPC HNFC
Sbjct: 259 CSFCIELPDRPVTTPCGHNFC 321
>TC86748 similar to GP|15485584|emb|CAC67503. SET-domain-containing protein
{Nicotiana tabacum}, partial (61%)
Length = 2742
Score = 71.6 bits (174), Expect = 9e-13
Identities = 53/162 (32%), Positives = 77/162 (46%), Gaps = 11/162 (6%)
Frame = +1
Query: 259 GVLVGETWEDRMECRQWGAHLPHVAGIAGQSTYGAQ-------SVALSGGYIDDEDHGEW 311
GV +G+ + R E G H P +AGI ++ +Q S+ SGGY DD G+
Sbjct: 1009 GVEIGDIFFFRFEMCLVGLHSPSMAGIDYLTSKASQEEEPLAVSIVSSGGYEDDTGDGDV 1188
Query: 312 FLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPE 371
+Y+G GG + + + DQK E N AL S +G VRV+R K+ P
Sbjct: 1189 LIYSGQGGVN-------REKGASDQKLERGNLALEKSMHRGNDVRVIRGLKDVMH---PS 1338
Query: 372 SGVR-YDGVYRIEKCW---RKNGIQVCRYLFVRCDNEPAPWT 409
V YDG+Y+I+ W K+G V +Y R +P +T
Sbjct: 1339 GKVYVYDGIYKIQDSWVEKAKSGFNVFKYKLARVRGQPEAYT 1464
>TC89006 weakly similar to GP|20466308|gb|AAM20471.1 unknown protein
{Arabidopsis thaliana}, partial (48%)
Length = 1715
Score = 63.9 bits (154), Expect = 2e-10
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Frame = +3
Query: 259 GVLVGETWEDRMECRQWGAHLP--------HVAGIAGQSTYGAQSVALSGGYIDDEDHGE 310
GV +G+ + RME G H H+ G G+ T A S+ SG Y D+ D G+
Sbjct: 15 GVEIGDIFFFRMEMCVVGLHAQSMGGIDALHIQGDRGEETL-AVSIVSSGEYDDEADDGD 191
Query: 311 WFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAP 370
+YTG GG +K + DQK N AL S R +RV+R K+ A
Sbjct: 192 VIIYTGQGGNFNKKDKHVS-----DQKLHKGNLALDRSSRTHNEIRVIRGIKD-----AV 341
Query: 371 ESGVR---YDGVYRIEKCW---RKNGIQVCRYLFVRCDNEPA 406
G + YDG+Y+I+ W K G + +Y +R +P+
Sbjct: 342 NPGAKTYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPS 467
>AL386496
Length = 492
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/60 (46%), Positives = 42/60 (69%), Gaps = 3/60 (5%)
Frame = +1
Query: 618 STESDENVKNVTDEVEVLKSCDSTEKVLEEINDNDLNRPHKRRKG---AGVIDEAPELED 674
S +S+EN K +E EV KS DS+EKV+EEIN++D+N P K+RKG V++ +++D
Sbjct: 4 SAKSEENDKP-DEETEVSKSSDSSEKVVEEINEDDVNPPQKKRKGDDDKAVVNVEEQIDD 180
>TC78312 similar to GP|19698885|gb|AAL91178.1 putative protein {Arabidopsis
thaliana}, partial (14%)
Length = 1317
Score = 44.3 bits (103), Expect = 2e-04
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 112 AAGGILDIFDGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWI 154
A GG D FD C+ C+ L PV T CGH FC +C +W+
Sbjct: 1200 AGGGDGDFFD----CNICLDLAKEPVLTCCGHLFCWQCLYRWL 1316
Score = 33.5 bits (75), Expect = 0.28
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 492 FGCNICHKVLSSPLTTPCAHNFCKVCL 518
F CNIC + P+ T C H FC CL
Sbjct: 1224 FDCNICLDLAKEPVLTCCGHLFCWQCL 1304
>AJ497196 weakly similar to SP|O60683|PEXA_ Peroxisome assembly protein 10
(Peroxin-10). [Human] {Homo sapiens}, partial (11%)
Length = 582
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 102 GGPSSGEKPPAAGGILDIFDGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWIGQGKRTC 161
G + PP + +L + CS C++ + TPCGH FC C W+ Q + C
Sbjct: 250 GNELEEDGPPKSDSVLTYY----RCSLCLEARTQDTATPCGHVFCWTCISGWL-QTRAQC 414
Query: 162 ANCR 165
CR
Sbjct: 415 PLCR 426
>TC89939 similar to GP|15289911|dbj|BAB63606. hypothetical protein~similar
to Arabidopsis thaliana chromosome 1 F18O14.3, partial
(23%)
Length = 978
Score = 43.1 bits (100), Expect = 3e-04
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 106 SGEKPPAAGGILDIFDGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWI--GQGKRTCAN 163
S PP + + G+ C+ C L P+ T CGH FC C KW+ R C
Sbjct: 86 SPPSPPYSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPV 265
Query: 164 CR 165
C+
Sbjct: 266 CK 271
Score = 34.3 bits (77), Expect = 0.16
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 492 FGCNICHKVLSSPLTTPCAHNFCKVCL 518
F CNIC + P+ T C H FC CL
Sbjct: 140 FECNICFDLAQDPIITLCGHLFCWPCL 220
>BF004323 similar to GP|4337011|gb| zinc-binding peroxisomal integral
membrane protein {Arabidopsis thaliana}, partial (32%)
Length = 513
Score = 41.2 bits (95), Expect = 0.001
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 121 DGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWIGQGKRTCANCRRDI 168
+G C+ C+ P T CGH FC C +W + K C CR I
Sbjct: 270 NGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNE-KPECPLCRTPI 130
>TC79652 weakly similar to GP|19698951|gb|AAL91211.1 unknown protein
{Arabidopsis thaliana}, partial (20%)
Length = 1590
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/88 (32%), Positives = 36/88 (39%)
Frame = +2
Query: 77 SAIRAIDSDASLTDQQKAKKKQELVGGPSSGEKPPAAGGILDIFDGSINCSFCMQLPDRP 136
S ++A D D+S TD K +QEL G DI + CS C
Sbjct: 671 SHLKAQDEDSSETD----KLQQEL-------------GEYRDI----VKCSICRDRTKEV 787
Query: 137 VTTPCGHNFCLKCFEKWIGQGKRTCANC 164
V T C H FC C +K G +R C C
Sbjct: 788 VITKCYHLFCNSCIQKIAGSRQRKCPQC 871
>TC88306 similar to GP|21593124|gb|AAM65073.1 unknown {Arabidopsis
thaliana}, partial (80%)
Length = 1304
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/85 (29%), Positives = 35/85 (40%), Gaps = 3/85 (3%)
Frame = +2
Query: 87 SLTDQQKAKKKQELVGGPSSGEKPPAAGGILDI---FDGSINCSFCMQLPDRPVTTPCGH 143
SL + K + GPS G+K A G L + C C++ + V C H
Sbjct: 626 SLEKLEICMKGHTSLDGPSYGKKMIEANGKLTTNVDLEREDECGICLEPCTKMVLPNCCH 805
Query: 144 NFCLKCFEKWIGQGKRTCANCRRDI 168
C+KC+ KW +C CR I
Sbjct: 806 AMCIKCYRKW-NTKSESCPFCRGSI 877
>TC79817 similar to GP|22795037|gb|AAN05420.1 putative RING protein {Populus
x canescens}, partial (32%)
Length = 1228
Score = 40.4 bits (93), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 121 DGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWI 154
D +C+ C+ PV T CGH +C C KW+
Sbjct: 310 DSCFDCNICLDFAHEPVVTLCGHLYCWSCIYKWL 411
Score = 30.8 bits (68), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 492 FGCNICHKVLSSPLTTPCAHNFCKVCL 518
F CNIC P+ T C H +C C+
Sbjct: 319 FDCNICLDFAHEPVVTLCGHLYCWSCI 399
>TC89100 similar to GP|21553849|gb|AAM62942.1 putative RING zinc finger
protein {Arabidopsis thaliana}, partial (44%)
Length = 1047
Score = 40.0 bits (92), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 122 GSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWI 154
G C+ C L PV T CGH FC C +W+
Sbjct: 349 GDFECNICFDLAQDPVITLCGHLFCWPCLYRWL 447
Score = 34.7 bits (78), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = +1
Query: 491 EFGCNICHKVLSSPLTTPCAHNFCKVCL 518
+F CNIC + P+ T C H FC CL
Sbjct: 352 DFECNICFDLAQDPVITLCGHLFCWPCL 435
>AW689612 weakly similar to GP|19698963|gb| unknown protein {Arabidopsis
thaliana}, partial (2%)
Length = 653
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/181 (22%), Positives = 66/181 (35%), Gaps = 42/181 (23%)
Frame = +1
Query: 486 EKLLKEFGCNICHKVLSSPLTTPCAHNFCKVCLEGAFSGKS------------------F 527
+KL E C +C + P+ PC H FC CL + S +S F
Sbjct: 106 QKLALELKCPLCLNLFKKPVLLPCNHLFCSSCLADSTSIRSECALCNTKCSQKDIRHLPF 285
Query: 528 IRK----------RACEGGRSLRAQKNVMKCPSC--------SNDIADFLQNPQVNREMM 569
+ C R+ N C SN + LQN ++ E +
Sbjct: 286 VESIVTIYKSLDATFCANAFQQRSSDNTRVLEQCQTLHNSAFSNKVDKVLQNSCMSNE-V 462
Query: 570 GVVESLQSQIAQDENSEQVENS------EELSDKSDEIVKNVPDEVEVSKPCDDSTESDE 623
GV ++ QS I + +++VE S +++K D + N + E P T+ +
Sbjct: 463 GVGKNHQSGIKMNGKAKEVEMSCKRXADNHIAEKPDSMNLNQATQSEPDSPPFCDTKXSD 642
Query: 624 N 624
N
Sbjct: 643 N 645
Score = 33.1 bits (74), Expect = 0.36
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 124 INCSFCMQLPDRPVTTPCGHNFCLKC 149
+ C C+ L +PV PC H FC C
Sbjct: 124 LKCPLCLNLFKKPVLLPCNHLFCSSC 201
>TC79248 similar to GP|22165059|gb|AAM93676.1 unknown protein {Oryza sativa
(japonica cultivar-group)}, partial (97%)
Length = 1272
Score = 39.3 bits (90), Expect = 0.005
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = +2
Query: 120 FDGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWIGQGKRTCANCR 165
F+ C CM++ + V C H CLKC+ +W + ++C CR
Sbjct: 542 FEREEECGICMEMNSKIVLPNCNHVMCLKCYHEWRAR-SQSCPFCR 676
>TC89577 similar to GP|22795037|gb|AAN05420.1 putative RING protein {Populus
x canescens}, partial (56%)
Length = 954
Score = 38.9 bits (89), Expect = 0.007
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 125 NCSFCMQLPDRPVTTPCGHNFCLKCFEKWI 154
+C+ C+ + PV T CGH +C C KW+
Sbjct: 202 DCNICLDFANEPVVTLCGHLYCWPCIYKWL 291
Score = 31.6 bits (70), Expect = 1.0
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +1
Query: 492 FGCNICHKVLSSPLTTPCAHNFCKVCL 518
F CNIC + P+ T C H +C C+
Sbjct: 199 FDCNICLDFANEPVVTLCGHLYCWPCI 279
>TC79052 similar to GP|22795037|gb|AAN05420.1 putative RING protein {Populus
x canescens}, partial (28%)
Length = 503
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 105 SSGEKPPAAGGILDIFDGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWI 154
S+ E + G + FD C+ C++ + PV T CGH +C C KW+
Sbjct: 150 STTEDTTISSGENNCFD----CNICLESANDPVVTLCGHLYCWPCIYKWL 287
Score = 32.0 bits (71), Expect = 0.80
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +3
Query: 492 FGCNICHKVLSSPLTTPCAHNFCKVCL 518
F CNIC + + P+ T C H +C C+
Sbjct: 195 FDCNICLESANDPVVTLCGHLYCWPCI 275
>TC79053 similar to GP|22795037|gb|AAN05420.1 putative RING protein {Populus
x canescens}, partial (28%)
Length = 1139
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 105 SSGEKPPAAGGILDIFDGSINCSFCMQLPDRPVTTPCGHNFCLKCFEKWI 154
S+ E + G + FD C+ C++ + PV T CGH +C C KW+
Sbjct: 203 STTEDTTISSGENNCFD----CNICLESANDPVVTLCGHLYCWPCIYKWL 340
Score = 32.0 bits (71), Expect = 0.80
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +2
Query: 492 FGCNICHKVLSSPLTTPCAHNFCKVCL 518
F CNIC + + P+ T C H +C C+
Sbjct: 248 FDCNICLESANDPVVTLCGHLYCWPCI 328
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,995,652
Number of Sequences: 36976
Number of extensions: 429947
Number of successful extensions: 2518
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2497
length of query: 680
length of database: 9,014,727
effective HSP length: 103
effective length of query: 577
effective length of database: 5,206,199
effective search space: 3003976823
effective search space used: 3003976823
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0191.7