BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0177.6
(1032 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 193 1e-67
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 209 3e-54
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 173 3e-43
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 173 3e-43
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 165 7e-41
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 158 1e-38
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 141 1e-33
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 137 2e-32
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 78 2e-30
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 118 1e-26
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 115 9e-26
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 114 2e-25
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 97 2e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 95 2e-19
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 80 4e-15
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 71 2e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 69 7e-12
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 69 9e-12
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 64 2e-10
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 64 3e-10
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 193 bits (491), Expect(2) = 1e-67
Identities = 90/141 (63%), Positives = 117/141 (82%)
Frame = -2
Query: 580 VVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNG 639
+ RNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+LI+F+ L+Q+DVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 640 YISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDT 699
+ EEV+V QPPGFED + P+HVF+L K+LYGLKQAPRAWYERLS FLL+N F+RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 700 TLFCKTYKDDILIVQIYVDDI 720
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 1e-67
Identities = 37/64 (57%), Positives = 49/64 (75%)
Frame = -3
Query: 511 LLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVF 570
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +PE VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 571 RNKL 574
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 209 bits (533), Expect = 3e-54
Identities = 103/217 (47%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 755 IQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGT 814
++V Q EG YI Q KY +LL++F M +S +++ P+ P C L K++ KV Y+
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 815 IGSLLYLTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYK 874
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+LRYL GT NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 875 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQM 934
L Y D+DYAGD +RKSTSG L S VSW+SK+Q + LST +AE+I+AA C+ Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 935 LWMKH*LEDYQILES-NIPIYCDNTAAISLSKNPILH 970
+WM+ LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 173 bits (439), Expect = 3e-43
Identities = 91/251 (36%), Positives = 150/251 (59%), Gaps = 6/251 (2%)
Frame = +3
Query: 522 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 581
+P + +EA++ + W +M E+ +N+ W L IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 582 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSV---NHNIVLHQIDVKSAFLN 638
+ KARLVA+GYSQQ G+DYTE FAPVAR + IR++I+ + + + + + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 639 GYISEEVYVHQPPGFEDEKKPDHVF--KLKKSLYGLKQAPRAWYERLSSFLLENEFERGK 696
+ + + ++ V ++K++LYGLKQAPRAWY R+ ++ + FE+
Sbjct: 399 N*MRKFLLINH------RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCP 560
Query: 697 VDTTLFCKTYK-DDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGI 755
+ TLF K + ILI+ +YVDD+IF ++++ +EF + M+ EF MS +G++ YFLG+
Sbjct: 561 YEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGV 740
Query: 756 QVDQTPEGTYI 766
+V Q +G YI
Sbjct: 741 EVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 173 bits (438), Expect = 3e-43
Identities = 97/218 (44%), Positives = 128/218 (58%), Gaps = 3/218 (1%)
Frame = +1
Query: 514 LKGLVSLIEPKSID---EALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVF 570
LK V L EP D L D W+ AM+ E N W LV P IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 571 RNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQI 630
R K N G V + KARLVA+G+SQ G DYTETF+PV + IRL+++ ++ + + QI
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 631 DVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN 690
D+ +AFLNG++ EEVY+ QP GFE K V KL KSLYGLKQAPRAWYE L+S ++
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 691 EFERGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQS 728
F + + D +L + + IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 165 bits (418), Expect = 7e-41
Identities = 80/183 (43%), Positives = 118/183 (63%)
Frame = -1
Query: 523 PKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVR 582
P+S +EA++DK+W ++ E KND W + P+ + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 583 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYIS 642
K RLVA+G++ G DY ETFAPVA+L IR+++S +VN L Q+DVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 643 EEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLF 702
+EVY++ PPG E K +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 703 CKT 705
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 158 bits (399), Expect = 1e-38
Identities = 91/241 (37%), Positives = 132/241 (54%)
Frame = +2
Query: 662 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTYKDDILIVQIYVDDII 721
V +L+KS+YGLKQA R WY +LS L+ + + D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 722 FGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNM 781
+ S + + F++ +G L+YFLG++V ++ +G ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 782 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTASRPDILFSVHLCARF*SD 841
L TP + L D + YR IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 842 PRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLG 901
P++ H A R+L+YLK GL Y TS KLS + D+D+A T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 902 S 902
S
Sbjct: 740 S 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 141 bits (356), Expect = 1e-33
Identities = 84/255 (32%), Positives = 130/255 (50%), Gaps = 3/255 (1%)
Frame = +1
Query: 165 GLPNLKFASDALCEACQKD-KFTKVPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRY 223
G+ L+F L +K F+ + K + L+ +H DL+GP K S GG+RY
Sbjct: 1 GIDKLEFCKHLLFFGNRKKVSFSTATHRTKGI------LDYIHSDLWGPSKVTSYGGRRY 162
Query: 224 GMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFES 283
M I+DD+ R WV FL K+E+ F + V+ + + ++ +D+ +F + F
Sbjct: 163 MMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNE 342
Query: 284 LFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGM--AKHFWAEAVNTACYI 341
++GIA + PR PQQNGV ER RTL E AR ML G+ + W EA +TAC++
Sbjct: 343 FCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHL 522
Query: 342 QNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYS 401
NR + K P ++W + S FGC Y L +L ++ +C+ L Y+
Sbjct: 523 VNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKL---APRAGECIFLSYA 693
Query: 402 ERSKGFRFYNTDAKT 416
SKG+R + +D K+
Sbjct: 694 SESKGYRLWCSDPKS 738
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 137 bits (345), Expect = 2e-32
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Frame = +2
Query: 881 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH* 940
+D+AGD RKSTSG LG+ +SW+SK+Q +A STAEAEYI++ C+TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 941 LEDYQILESNIP--IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVD 998
LE E N P IYCDN +AI+LSKNP+ H R+KHI++++H IR+ + + +++++
Sbjct: 182 LEVMHH-EQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCP 358
Query: 999 TDHQWADIFTKPLAEDRFNFILKNLNM 1025
T+ + ADIFTKPL + F + K L M
Sbjct: 359 TEEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 77.8 bits (190), Expect(2) = 2e-30
Identities = 40/87 (45%), Positives = 58/87 (65%)
Frame = +1
Query: 850 VKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWAS 909
VKRI+RY+KGT+ + + + SE + GY D+D+AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 910 KRQSTIALSTAEAEYISAAICSTQMLW 936
K Q+ +ALST EAEY++A + + L+
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
Score = 73.9 bits (180), Expect(2) = 2e-30
Identities = 29/84 (34%), Positives = 55/84 (64%)
Frame = +3
Query: 933 QMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 992
+ +WM+ +E+ + I +YCD+ +A+ +++NP HSR KHI ++YHF+R+ V++G +
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSV 428
Query: 993 LLKFVDTDHQWADIFTKPLAEDRF 1016
++ + T+ AD TK + D+F
Sbjct: 429 DMQKIHTNDNLADAMTKSINTDKF 500
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 118 bits (295), Expect = 1e-26
Identities = 58/113 (51%), Positives = 69/113 (60%)
Frame = +1
Query: 299 TPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYEL 358
TPQQNGV ER NRTL E R ML+ GMAK FWAEAV TACY+ NR I KTP E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 359 WKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 411
WK + S H FGC YV+ K D KS KC+ LGY++ KG+ ++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 115 bits (288), Expect = 9e-26
Identities = 58/163 (35%), Positives = 97/163 (58%), Gaps = 2/163 (1%)
Frame = +1
Query: 849 AVKRILRYLKGTTNLGLMYKKTSEYK--LSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 906
A+K +L+YL + L Y K ++ + L GY DADYAG+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 907 WASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKN 966
W + +QS + LST +AEYI+ +W+K + + I + + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 967 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTK 1009
+ H R KHI+++ HFIRD ++ ++++ + ++ AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 114 bits (285), Expect = 2e-25
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 4/240 (1%)
Frame = -3
Query: 113 KNNIYKIRLSELEAQNVKCLL----SVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPN 168
K ++Y + + N KC S+N++ +WH RLGH R LNL+ LP
Sbjct: 674 KGDLYMLEKLD-PVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRA------LNLM--LPG 525
Query: 169 LKFASDALCEACQKDKFTKVPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIV 228
+ F + CEAC K K F + V + +L++ DL+ + S +Y + +
Sbjct: 524 VVFENKN-CEACILGKHCKNVFPRTSTVYEN-CFDLIYTDLW-TAPSLSRDNHKYFVTFI 354
Query: 229 DDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSY 288
D+ S++TW+ + KD F F A V N +I +RSD+GG++ + F+S D +
Sbjct: 353 DEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHH 174
Query: 289 GIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVR 348
GI H SCP TPQQNGV +RKN+ L E+AR+++ + V+TACY+ N I +
Sbjct: 173 GILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTK 21
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 97.4 bits (241), Expect = 2e-20
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 525 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNK 584
S+D + +D I ++ L LVKKP V IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 585 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGY 640
ARLVA+GY +Q+GID+ E FAPV R+E I LL++ + + +H IDVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 94.7 bits (234), Expect = 2e-19
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Frame = +1
Query: 825 RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMY---KKTSEYKLSGYCDA 881
RPDI +SV + ++F DPR+ HL A RILRY++GT GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 882 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWM 937
D+ GD R+STSG +SW +K+Q ALS+ EAEYI+ + Q LW+
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWL 459
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 80.1 bits (196), Expect = 4e-15
Identities = 40/113 (35%), Positives = 67/113 (58%)
Frame = -2
Query: 338 ACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLL 397
ACY+ NRI R + ++ P+E+ KP+++Y FGC+CYVL + +K +A+S K +
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 398 LGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDK 450
+GYS KG++ Y+ +A+ + S V+F ++ + K E DL+ SDK
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLT---SDK 375
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/104 (37%), Positives = 58/104 (55%)
Frame = -3
Query: 819 LYLTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGY 878
+ LT P+I FS++L +R+ S P H +K I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 879 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 922
+A Y D + +S +G G+ ++SW S + STIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.3 bits (168), Expect = 7e-12
Identities = 36/74 (48%), Positives = 47/74 (62%)
Frame = -2
Query: 604 FAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVF 663
F P+ +L I L+S N+ L +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*E-VGKMVG 378
Query: 664 KLKKSLYGLKQAPR 677
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 68.9 bits (167), Expect = 9e-12
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Frame = +1
Query: 674 QAPRAWYERLSSFLLENEFERGKVDTTLFCK---TYKDDILIVQIYVDDIIFGSANQSLC 730
Q+PR W++R + + + + + + D +F K T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 731 KEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP 790
K ++ EFE+ +G LKYFLG++V + +G+ I Q KY +LLK+ M+ + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 791 MHPTC 795
C
Sbjct: 355 YGCNC 369
Score = 35.0 bits (79), Expect = 0.15
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 782 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTASRPDILFSVHLCARF 838
L+ ++TPM T L D V + Y+ +G L+YL+ +RPDI F V ++F
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +2
Query: 955 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAED 1014
CD +A L+ NP+ HSR KHI + HF+RD VQ+G L ++ V T Q AD TKPL++
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1015 RFNFILKNLNM 1025
R + + +
Sbjct: 209 RHQLLRNKIGV 241
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 63.9 bits (154), Expect = 3e-10
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +3
Query: 11 WYLDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSS---PCIDNVL 67
W +DSGC+ HMT +R +F+EL +V ++ G GT+ V S I NVL
Sbjct: 108 WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYKQISNVL 287
Query: 68 LVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVL 107
L +LLS+ QL KGY V+F + C Q + VL
Sbjct: 288 YAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVL 407
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,073,554
Number of Sequences: 36976
Number of extensions: 453012
Number of successful extensions: 2246
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 2175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of query: 1032
length of database: 9,014,727
effective HSP length: 106
effective length of query: 926
effective length of database: 5,095,271
effective search space: 4718220946
effective search space used: 4718220946
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0177.6