TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0175.3
         (520 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI308650 OMNI|NTL01EC0 tRNA nucleotidyl transferase {Escherichia...    60  3e-09
TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (AR...    28  6.6
TC87386 similar to GP|3717239|emb|CAA03732.1 unnamed protein pro...    28  8.6

>BI308650 OMNI|NTL01EC0 tRNA nucleotidyl transferase {Escherichia coli
           K12-MG1655}, partial (43%)
          Length = 765

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 55/182 (30%), Positives = 84/182 (45%), Gaps = 6/182 (3%)
 Frame = +3

Query: 89  GYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPIC---HVHMDG 145
           G  +YLVGG VRD +L    KD D +      + M    + + VG+ FP+      H + 
Sbjct: 219 GVKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGY-QQVGRDFPVFLHPQTHEEY 395

Query: 146 TVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPYAKIVY 205
            +      + + +   T +     AP+    +D  R      RD TIN L  D   +I+ 
Sbjct: 396 ALARTERKSGSGYTGFTCYA----APDVTLEDDLKR------RDLTINALAQDDNGEIID 545

Query: 206 DYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAAR---LGFSISRETAHSVKNLS 262
            Y  G+ D+    +R V PA   F ED  R+LR  R AAR   LGF I+ ET   ++ ++
Sbjct: 546 PY-NGLGDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMT 713

Query: 263 YS 264
           ++
Sbjct: 714 HA 719


>TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (15%)
          Length = 1143

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +3

Query: 11  CKPNLHLRIAPFQCVRKVSQLKLNLNHTHHLASSFISV 48
           C  NL+L I  FQ ++KVS + LNL   H+ +SSF S+
Sbjct: 435 CCSNLNL-IRLFQRIKKVS-IHLNLRPKHNNSSSFFSI 542


>TC87386 similar to GP|3717239|emb|CAA03732.1 unnamed protein product
           {Cyamopsis tetragonoloba}, partial (89%)
          Length = 1868

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +3

Query: 67  LGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDIL----TSADLKEV 122
           +G   S+ AHP K +   L K   DVY  G    ++ L  T  DF+ L    T  +LK V
Sbjct: 477 VGKALSIQAHPDKELARMLHKLHPDVYKDGNHKPEMALAMT--DFEALCGFITLKELKAV 650

Query: 123 MRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKP 160
           + +    E+V     +        V+E S  N  K KP
Sbjct: 651 IHTVP--EVVN----LVGASNANLVLETSDQNEEKVKP 746


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,584,234
Number of Sequences: 36976
Number of extensions: 238883
Number of successful extensions: 1651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of query: 520
length of database: 9,014,727
effective HSP length: 100
effective length of query: 420
effective length of database: 5,317,127
effective search space: 2233193340
effective search space used: 2233193340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)