Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0174.3
         (919 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW268026 similar to GP|8980710|gb STICHEL {Arabidopsis thaliana}...   163  3e-40
TC88082 similar to GP|10798790|dbj|BAB16439. replication factor ...    52  8e-07
CB892795 weakly similar to GP|21689663|gb| unknown protein {Arab...    33  0.38
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo...    31  2.5
TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-inf...    30  4.2
TC89384 similar to GP|15450417|gb|AAK96502.1 At1g26300/F28B23_4 ...    30  4.2
TC87575 weakly similar to GP|7340858|dbj|BAA92948.1 Similar to A...    30  5.5
AL370236 weakly similar to GP|6041804|gb| putative protein kinas...    29  7.2
TC93729 similar to GP|12841139|dbj|BAB25093. data source:SPTR  s...    29  7.2
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati...    29  9.4
TC92759 weakly similar to GP|15795104|dbj|BAB02368. gene_id:MJK1...    29  9.4

>AW268026 similar to GP|8980710|gb STICHEL {Arabidopsis thaliana}, partial
           (14%)
          Length = 708

 Score =  163 bits (412), Expect = 3e-40
 Identities = 95/176 (53%), Positives = 123/176 (68%), Gaps = 1/176 (0%)
 Frame = +2

Query: 489 LDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLA 548
           LD +  ALD IA  + GS+ DAE ML+QLSLLGK+I  SLV+EL G+VSD++LL LL+LA
Sbjct: 2   LDAETDALDLIALNADGSL*DAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELA 181

Query: 549 LSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGK-CVDGGSEVRSKFSGRYTSE 607
           +SSDT+ TV R+RELM S + P+ L+SQLA LIMDI+AG   V       S F GR  +E
Sbjct: 182 MSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNE 361

Query: 608 ADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDVNDTKLCLRE 663
            +L++L  A+++LSEAEKQLR S  ++TW T  LLQL SV  PS DV  +    R+
Sbjct: 362 TELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSV--PSSDVTQSSSSRRQ 523


>TC88082 similar to GP|10798790|dbj|BAB16439. replication factor C 36kDa
           subunit {Oryza sativa (japonica cultivar-group)},
           partial (88%)
          Length = 1354

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 49/233 (21%), Positives = 93/233 (39%)
 Frame = +1

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP S  D+     +V ++    +   +    L+ GP GTGKTS   I A A      +
Sbjct: 175 KYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLY-GPPGTGKTST--ILAVARKLYGAQ 345

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
                       +     + + + +D VR    D   +   +  + P     K+ ++DE 
Sbjct: 346 YHN---------MILELNASDDRGIDVVRQQIQDFASTQSLSFGVKP---SVKLVLLDEA 489

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             +  +   +L   +E  ++   F +I   ++K+  +  SR   + F  +    +  RL+
Sbjct: 490 DAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLK 669

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTG 534
            +   E LD   + L  +   S G +R A  +L    +  ++I    V+  TG
Sbjct: 670 HVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTG 828


>CB892795 weakly similar to GP|21689663|gb| unknown protein {Arabidopsis
           thaliana}, partial (10%)
          Length = 586

 Score = 33.5 bits (75), Expect = 0.38
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 18  ALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLF 57
           ALRR  S  DP  N + K   L+ N  W NG G G    F
Sbjct: 63  ALRRGGSGEDPDENPLLKHQILVYNSPWNNGGGPGARTSF 182


>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
           falciparum 3D7}, partial (10%)
          Length = 633

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -3

Query: 118 LVYSNPNRQCSSGNKSSSESCDSNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGR 177
           L+ S  +   SS + SSS S  S+        +S    S++     SC  +++ S     
Sbjct: 265 LILSISSSSPSSSSSSSSSSSSSSSSSSSSSCSSSSSSSSSSSSSSSCSSSSSSSCSSSS 86

Query: 178 IDHSRSDKKSLRANQVRPAQVEGGIV 203
              S S   SL ++  R  Q++  IV
Sbjct: 85  SSTSPSSSSSLCSSTFRRFQLDSAIV 8


>TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-infected
           erythrocyte surface antigen {Plasmodium falciparum},
           partial (2%)
          Length = 2007

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
 Frame = +1

Query: 41  DNVQWENGSGNGISLLFPEASRECDSDDNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSR 100
           D  Q EN +  G +    E  +E + ++      +      Q   D T+ + +     + 
Sbjct: 790 DQAQTENDTPKGSASESDEQKQEQEQNNTTKDDVQTTDTSSQNGNDTTEKQNETSEDANS 969

Query: 101 LKPSGMSFQDSQHNDDELVYSNPNRQCSSGNKSSSESCDSN-HGGEGLDLASIEPHSNNF 159
            K    +   + +N+D       ++  S+   SSSE+ D N + GE  D  +  P  N+ 
Sbjct: 970 KKEDSSALNTTPNNEDSKSGVAGDQADSTTTTSSSETQDGNTNHGEYKDTTNENPEKNSG 1149

Query: 160 RDG 162
           ++G
Sbjct: 1150QEG 1158


>TC89384 similar to GP|15450417|gb|AAK96502.1 At1g26300/F28B23_4
           {Arabidopsis thaliana}, partial (46%)
          Length = 801

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 27/94 (28%), Positives = 39/94 (40%)
 Frame = +1

Query: 380 SKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENL 439
           SK+  E+ S  + + DQ+KS   N  IPP  S           +  A T ++++  +ENL
Sbjct: 271 SKKADEIKSAALRQADQIKSFSDNISIPPQFS----------AIAAAATSSTVAPPVENL 420

Query: 440 SEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKD 473
                   IT DL    +   S     HFP   D
Sbjct: 421 ER----FGITDDLRSFVQGLTS-TTFKHFPVNSD 507


>TC87575 weakly similar to GP|7340858|dbj|BAA92948.1 Similar to Arabidopsis
           thaliana chromosome 2 BAC clone F4L23 ; hypothetical
           protein. (AC002387), partial (8%)
          Length = 1188

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 881 HLVPSVLESDYQSNCFPQNLWLQKKFRSSYSSKSTL 916
           +++   L SD+ SN FP  LW+     SS++S +T+
Sbjct: 915 NIISESLRSDFDSNFFPTILWVIILLFSSFNSAATI 808


>AL370236 weakly similar to GP|6041804|gb| putative protein kinase
           {Arabidopsis thaliana}, partial (4%)
          Length = 378

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 28  PSTNSICKRSSLIDNVQWENGSGNGISLLFPEASRECDSDDNVDFTSRNL 77
           PS +S+ K SS + N      S  G+SL  P A+++   DDN   T+ ++
Sbjct: 179 PSNSSLIKCSSAVGNPFLS--SCRGVSLTVPSANQQGQFDDNSSMTAADI 322


>TC93729 similar to GP|12841139|dbj|BAB25093. data source:SPTR  source
           key:Q9H5X9  evidence:ISS~homolog to CDNA: FLJ22800 FIS
           CLONE KAIA2630~, partial (6%)
          Length = 474

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = -3

Query: 744 KAEKSWKLIASSLQFILGCNIELRITYEPRASDSKYAKLKRSSFSIFSCSRRAQQKSLSS 803
           K  +  +L+ SS  FIL   +   I  E  A   K   +K  ++ +    ++   + L +
Sbjct: 469 KRNREMRLLISSWSFILYTLLVFLIVQESCAR--KITIIKDVAYDL----QQLTTEGLVN 308

Query: 804 NGSESDYADHVSQNPMIKDKTLTSSDYH 831
           N  E + +DHV  N   + K + S D+H
Sbjct: 307 NIMEVENSDHVEMNKKDEHKEIISKDHH 224


>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
           1 {Arabidopsis thaliana}, partial (37%)
          Length = 1760

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 49/169 (28%), Positives = 71/169 (41%), Gaps = 11/169 (6%)
 Frame = +2

Query: 249 SPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISP--TLETPRS----LSMK 302
           SP F +  L S ++ + L L          D  MR  GGDISP  TL  P      + MK
Sbjct: 212 SPSFHKLVLPSTLQAKQLRLP---------DDFMRKYGGDISPTVTLTVPDGSVWRVIMK 364

Query: 303 FRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVEG 362
              N F  L G N  V++   +IS G +  F      +  GK S   +   +L    +  
Sbjct: 365 KVDNKFWFLDGWNEFVQNY--SISTGYLLVF------KYEGK-SHFTVNIFSLPTSEINY 517

Query: 363 QKPCGLCRECVLFFSGRS--KEVKEVDSVRINRTDQVK---SLVKNACI 406
           Q P     E  LF    +  +E+++ DSV I  +   K   SL++N  +
Sbjct: 518 QSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMESSPTKLTPSLLQNKAV 664


>TC92759 weakly similar to GP|15795104|dbj|BAB02368. gene_id:MJK13.5~unknown
           protein {Arabidopsis thaliana}, partial (11%)
          Length = 751

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
 Frame = -1

Query: 40  IDNVQWENGSGNGISLLFP--EASRECDSDDNVDFT 73
           ++ V  E G   G+  L P  E S++C SDD+ DF+
Sbjct: 370 LETVPAETGRTLGLEFLLPWKELSKDCPSDDSEDFS 263


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,514,383
Number of Sequences: 36976
Number of extensions: 433957
Number of successful extensions: 2008
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of query: 919
length of database: 9,014,727
effective HSP length: 105
effective length of query: 814
effective length of database: 5,132,247
effective search space: 4177649058
effective search space used: 4177649058
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)


Lotus: description of TM0174.3