
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0174.3
(919 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW268026 similar to GP|8980710|gb STICHEL {Arabidopsis thaliana}... 163 3e-40
TC88082 similar to GP|10798790|dbj|BAB16439. replication factor ... 52 8e-07
CB892795 weakly similar to GP|21689663|gb| unknown protein {Arab... 33 0.38
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 31 2.5
TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-inf... 30 4.2
TC89384 similar to GP|15450417|gb|AAK96502.1 At1g26300/F28B23_4 ... 30 4.2
TC87575 weakly similar to GP|7340858|dbj|BAA92948.1 Similar to A... 30 5.5
AL370236 weakly similar to GP|6041804|gb| putative protein kinas... 29 7.2
TC93729 similar to GP|12841139|dbj|BAB25093. data source:SPTR s... 29 7.2
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati... 29 9.4
TC92759 weakly similar to GP|15795104|dbj|BAB02368. gene_id:MJK1... 29 9.4
>AW268026 similar to GP|8980710|gb STICHEL {Arabidopsis thaliana}, partial
(14%)
Length = 708
Score = 163 bits (412), Expect = 3e-40
Identities = 95/176 (53%), Positives = 123/176 (68%), Gaps = 1/176 (0%)
Frame = +2
Query: 489 LDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLA 548
LD + ALD IA + GS+ DAE ML+QLSLLGK+I SLV+EL G+VSD++LL LL+LA
Sbjct: 2 LDAETDALDLIALNADGSL*DAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELA 181
Query: 549 LSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGK-CVDGGSEVRSKFSGRYTSE 607
+SSDT+ TV R+RELM S + P+ L+SQLA LIMDI+AG V S F GR +E
Sbjct: 182 MSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNE 361
Query: 608 ADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDVNDTKLCLRE 663
+L++L A+++LSEAEKQLR S ++TW T LLQL SV PS DV + R+
Sbjct: 362 TELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSV--PSSDVTQSSSSRRQ 523
>TC88082 similar to GP|10798790|dbj|BAB16439. replication factor C 36kDa
subunit {Oryza sativa (japonica cultivar-group)},
partial (88%)
Length = 1354
Score = 52.4 bits (124), Expect = 8e-07
Identities = 49/233 (21%), Positives = 93/233 (39%)
Frame = +1
Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
K+RP S D+ +V ++ + + L+ GP GTGKTS I A A +
Sbjct: 175 KYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLY-GPPGTGKTST--ILAVARKLYGAQ 345
Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
+ + + + +D VR D + + + P K+ ++DE
Sbjct: 346 YHN---------MILELNASDDRGIDVVRQQIQDFASTQSLSFGVKP---SVKLVLLDEA 489
Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
+ + +L +E ++ F +I ++K+ + SR + F + + RL+
Sbjct: 490 DAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLK 669
Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTG 534
+ E LD + L + S G +R A +L + ++I V+ TG
Sbjct: 670 HVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTG 828
>CB892795 weakly similar to GP|21689663|gb| unknown protein {Arabidopsis
thaliana}, partial (10%)
Length = 586
Score = 33.5 bits (75), Expect = 0.38
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 18 ALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLF 57
ALRR S DP N + K L+ N W NG G G F
Sbjct: 63 ALRRGGSGEDPDENPLLKHQILVYNSPWNNGGGPGARTSF 182
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = -3
Query: 118 LVYSNPNRQCSSGNKSSSESCDSNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGR 177
L+ S + SS + SSS S S+ +S S++ SC +++ S
Sbjct: 265 LILSISSSSPSSSSSSSSSSSSSSSSSSSSSCSSSSSSSSSSSSSSSCSSSSSSSCSSSS 86
Query: 178 IDHSRSDKKSLRANQVRPAQVEGGIV 203
S S SL ++ R Q++ IV
Sbjct: 85 SSTSPSSSSSLCSSTFRRFQLDSAIV 8
>TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-infected
erythrocyte surface antigen {Plasmodium falciparum},
partial (2%)
Length = 2007
Score = 30.0 bits (66), Expect = 4.2
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Frame = +1
Query: 41 DNVQWENGSGNGISLLFPEASRECDSDDNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSR 100
D Q EN + G + E +E + ++ + Q D T+ + + +
Sbjct: 790 DQAQTENDTPKGSASESDEQKQEQEQNNTTKDDVQTTDTSSQNGNDTTEKQNETSEDANS 969
Query: 101 LKPSGMSFQDSQHNDDELVYSNPNRQCSSGNKSSSESCDSN-HGGEGLDLASIEPHSNNF 159
K + + +N+D ++ S+ SSSE+ D N + GE D + P N+
Sbjct: 970 KKEDSSALNTTPNNEDSKSGVAGDQADSTTTTSSSETQDGNTNHGEYKDTTNENPEKNSG 1149
Query: 160 RDG 162
++G
Sbjct: 1150QEG 1158
>TC89384 similar to GP|15450417|gb|AAK96502.1 At1g26300/F28B23_4
{Arabidopsis thaliana}, partial (46%)
Length = 801
Score = 30.0 bits (66), Expect = 4.2
Identities = 27/94 (28%), Positives = 39/94 (40%)
Frame = +1
Query: 380 SKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENL 439
SK+ E+ S + + DQ+KS N IPP S + A T ++++ +ENL
Sbjct: 271 SKKADEIKSAALRQADQIKSFSDNISIPPQFS----------AIAAAATSSTVAPPVENL 420
Query: 440 SEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKD 473
IT DL + S HFP D
Sbjct: 421 ER----FGITDDLRSFVQGLTS-TTFKHFPVNSD 507
>TC87575 weakly similar to GP|7340858|dbj|BAA92948.1 Similar to Arabidopsis
thaliana chromosome 2 BAC clone F4L23 ; hypothetical
protein. (AC002387), partial (8%)
Length = 1188
Score = 29.6 bits (65), Expect = 5.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 881 HLVPSVLESDYQSNCFPQNLWLQKKFRSSYSSKSTL 916
+++ L SD+ SN FP LW+ SS++S +T+
Sbjct: 915 NIISESLRSDFDSNFFPTILWVIILLFSSFNSAATI 808
>AL370236 weakly similar to GP|6041804|gb| putative protein kinase
{Arabidopsis thaliana}, partial (4%)
Length = 378
Score = 29.3 bits (64), Expect = 7.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 28 PSTNSICKRSSLIDNVQWENGSGNGISLLFPEASRECDSDDNVDFTSRNL 77
PS +S+ K SS + N S G+SL P A+++ DDN T+ ++
Sbjct: 179 PSNSSLIKCSSAVGNPFLS--SCRGVSLTVPSANQQGQFDDNSSMTAADI 322
>TC93729 similar to GP|12841139|dbj|BAB25093. data source:SPTR source
key:Q9H5X9 evidence:ISS~homolog to CDNA: FLJ22800 FIS
CLONE KAIA2630~, partial (6%)
Length = 474
Score = 29.3 bits (64), Expect = 7.2
Identities = 23/88 (26%), Positives = 40/88 (45%)
Frame = -3
Query: 744 KAEKSWKLIASSLQFILGCNIELRITYEPRASDSKYAKLKRSSFSIFSCSRRAQQKSLSS 803
K + +L+ SS FIL + I E A K +K ++ + ++ + L +
Sbjct: 469 KRNREMRLLISSWSFILYTLLVFLIVQESCAR--KITIIKDVAYDL----QQLTTEGLVN 308
Query: 804 NGSESDYADHVSQNPMIKDKTLTSSDYH 831
N E + +DHV N + K + S D+H
Sbjct: 307 NIMEVENSDHVEMNKKDEHKEIISKDHH 224
>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
1 {Arabidopsis thaliana}, partial (37%)
Length = 1760
Score = 28.9 bits (63), Expect = 9.4
Identities = 49/169 (28%), Positives = 71/169 (41%), Gaps = 11/169 (6%)
Frame = +2
Query: 249 SPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISP--TLETPRS----LSMK 302
SP F + L S ++ + L L D MR GGDISP TL P + MK
Sbjct: 212 SPSFHKLVLPSTLQAKQLRLP---------DDFMRKYGGDISPTVTLTVPDGSVWRVIMK 364
Query: 303 FRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVEG 362
N F L G N V++ +IS G + F + GK S + +L +
Sbjct: 365 KVDNKFWFLDGWNEFVQNY--SISTGYLLVF------KYEGK-SHFTVNIFSLPTSEINY 517
Query: 363 QKPCGLCRECVLFFSGRS--KEVKEVDSVRINRTDQVK---SLVKNACI 406
Q P E LF + +E+++ DSV I + K SL++N +
Sbjct: 518 QSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMESSPTKLTPSLLQNKAV 664
>TC92759 weakly similar to GP|15795104|dbj|BAB02368. gene_id:MJK13.5~unknown
protein {Arabidopsis thaliana}, partial (11%)
Length = 751
Score = 28.9 bits (63), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Frame = -1
Query: 40 IDNVQWENGSGNGISLLFP--EASRECDSDDNVDFT 73
++ V E G G+ L P E S++C SDD+ DF+
Sbjct: 370 LETVPAETGRTLGLEFLLPWKELSKDCPSDDSEDFS 263
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,514,383
Number of Sequences: 36976
Number of extensions: 433957
Number of successful extensions: 2008
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of query: 919
length of database: 9,014,727
effective HSP length: 105
effective length of query: 814
effective length of database: 5,132,247
effective search space: 4177649058
effective search space used: 4177649058
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0174.3