BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.7
(1602 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 193 3e-67
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 212 8e-55
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 174 2e-43
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 173 6e-43
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 165 1e-40
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 162 1e-39
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 145 9e-35
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 138 2e-32
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 78 3e-30
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 122 9e-28
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 116 6e-26
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 116 8e-26
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 98 3e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 97 7e-20
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 78 2e-14
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 75 3e-13
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 72 2e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 69 1e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 64 4e-10
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 63 8e-10
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 193 bits (491), Expect(2) = 3e-67
Identities = 91/141 (64%), Positives = 116/141 (81%)
Frame = -2
Query: 1152 VVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNG 1211
+ RNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+LI+F+ L+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1212 YISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1271
+ EEV+V QPPGFED + P+HVF+L K+LYGLKQAPRAWYERLS FLL+N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1272 TLFCKTYKDDILIVQIYVDDI 1292
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.4 bits (202), Expect(2) = 3e-67
Identities = 37/64 (57%), Positives = 49/64 (75%)
Frame = -3
Query: 1083 LLSLKGLVSLIEPKSIDEALQDKDWILAMKEELNQFSKNDVWSLVKKPENVHVIGTKWVF 1142
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +PE VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 1143 RNKL 1146
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 212 bits (540), Expect = 8e-55
Identities = 103/217 (47%), Positives = 146/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 1327 IQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGM 1386
++V Q EG YI Q KY +LL++F M +S +++ P+ P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1387 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYK 1446
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+LRYL GT NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1447 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQM 1506
L Y D+DYAGD +RKSTSG L S VSW+SK+Q + LST +AE+I+AA C+ Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1507 LWMKHQLEDYQIFES-NIPIYCDNTAAISLSKNPILH 1542
+WM+ LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 174 bits (441), Expect = 2e-43
Identities = 97/218 (44%), Positives = 129/218 (58%), Gaps = 3/218 (1%)
Frame = +1
Query: 1086 LKGLVSLIEPKSID---EALQDKDWILAMKEELNQFSKNDVWSLVKKPENVHVIGTKWVF 1142
LK V L EP D L D W+ AMK E N W LV P + IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 1143 RNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQM 1202
R K N G V + KARLVA+G+SQ G DYTETF+PV + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 1203 DVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN 1262
D+ +AFLNG++ EEVY+ QP GFE K V KL KSLYGLKQAPRAWYE L+S ++
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 1263 EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQS 1300
F + + D +L + + IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 173 bits (438), Expect = 6e-43
Identities = 91/251 (36%), Positives = 149/251 (59%), Gaps = 6/251 (2%)
Frame = +3
Query: 1094 EPKSIDEALQDKDWILAMKEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVV 1153
+P + +EA++ + W +M E+ +N+ W L IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1154 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSV---NHNIILHQMDVKSAFLN 1210
+ KARLVA+GYSQQ G+DYTE FAPVAR + IR++I+ + + + M + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 1211 GYISEEVYVHQPPGFEDEKKPDHVF--KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGK 1268
+ + + ++ V ++K++LYGLKQAPRAWY R+ ++ + F +
Sbjct: 399 N*MRKFLLINH------RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCP 560
Query: 1269 VDTTLFCKTYK-DDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGI 1327
+ TLF K + ILI+ +YVDD+IF ++++ +EF + M+ EF MS +G++ YFLG+
Sbjct: 561 YEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGV 740
Query: 1328 QVDQTPEGTYI 1338
+V Q +G YI
Sbjct: 741 EVTQNEKGIYI 773
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 165 bits (418), Expect = 1e-40
Identities = 81/183 (44%), Positives = 118/183 (64%)
Frame = -1
Query: 1095 PKSIDEALQDKDWILAMKEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVR 1154
P+S +EA++DK+W ++ E KND W + P+ + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1155 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYIS 1214
K RLVA+G++ G DY ETFAPVA+L IR+++S +VN L QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1215 EEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLF 1274
+EVY++ PPG E K +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1275 CKT 1277
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 162 bits (410), Expect = 1e-39
Identities = 91/241 (37%), Positives = 134/241 (54%)
Frame = +2
Query: 1234 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1293
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1294 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNM 1353
+ S + + F++ +G L+YFLG++V ++ +G ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1354 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 1413
L TP + L D + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1414 PRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLG 1473
P++ H A R+L+YLK GL Y TS KLS + D+D+A T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 1474 S 1474
S
Sbjct: 740 S 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 145 bits (367), Expect = 9e-35
Identities = 86/255 (33%), Positives = 131/255 (50%), Gaps = 3/255 (1%)
Frame = +1
Query: 737 GLPNLKFASDALC-ETCQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRY 795
G+ L+F L +K F+ + K + L+ +H DL+GP K S GG+RY
Sbjct: 1 GIDKLEFCKHLLFFGNRKKVSFSTATHRTKGI------LDYIHSDLWGPSKVTSYGGRRY 162
Query: 796 GMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFES 855
M I+DD+ R WV FL K+E+ F + V+ + + ++ +D+ EF + F
Sbjct: 163 MMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNE 342
Query: 856 LFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGM--AKHFWAEAVNTACYI 913
++GIA + PR PQQNGV ER RTL E AR ML G+ + W EA +TAC++
Sbjct: 343 FCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHL 522
Query: 914 QNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDPKSSKCLLLGYS 973
NR + K P ++W + S FGC Y L +L P++ +C+ L Y+
Sbjct: 523 VNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKL---APRAGECIFLSYA 693
Query: 974 DRSKGFRFYNTDAKT 988
SKG+R + +D K+
Sbjct: 694 SESKGYRLWCSDPKS 738
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 138 bits (348), Expect = 2e-32
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Frame = +2
Query: 1453 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQ 1512
+D+AGD RKSTSG LG+ +SW+SK+Q +A STAEAEYI++ C+TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1513 LEDYQIFESNIP--IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVD 1570
LE E N P IYCDN +AI+LSKNP+ H R+KHI++++H IR+ + + +++++
Sbjct: 182 LEVMH-HEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCP 358
Query: 1571 TDHQWADIFTKPLAEDRFNFILKNLNM 1597
T+ + ADIFTKPL + F + K L M
Sbjct: 359 TEEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 77.8 bits (190), Expect(2) = 3e-30
Identities = 40/87 (45%), Positives = 58/87 (65%)
Frame = +1
Query: 1422 VKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWAS 1481
VKRI+RY+KGT+ + + + SE + GY D+D+AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1482 KRQSTIALSTAEAEYISAAICSTQMLW 1508
K Q+ +ALST EAEY++A + + L+
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
Score = 74.3 bits (181), Expect(2) = 3e-30
Identities = 29/84 (34%), Positives = 55/84 (64%)
Frame = +3
Query: 1505 QMLWMKHQLEDYQIFESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 1564
+ +WM+ +E+ + I +YCD+ +A+ +++NP HSR KHI ++YHF+R+ V++G +
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSV 428
Query: 1565 LLKFVDTDHQWADIFTKPLAEDRF 1588
++ + T+ AD TK + D+F
Sbjct: 429 DMQKIHTNDNLADAMTKSINTDKF 500
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 122 bits (307), Expect = 9e-28
Identities = 60/113 (53%), Positives = 70/113 (61%)
Frame = +1
Query: 871 TPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYEL 930
TPQQNGV ER NRTL E R ML+ GMAK FWAEAV TACY+ NR I KTP E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 931 WKNIKPNISYFHPFGCVCYVLNTKDRLHKFDPKSSKCLLLGYSDRSKGFRFYN 983
WK + S H FGC YV+ K DPKS KC+ LGY+D KG+ ++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 116 bits (291), Expect = 6e-26
Identities = 58/163 (35%), Positives = 97/163 (58%), Gaps = 2/163 (1%)
Frame = +1
Query: 1421 AVKRILRYLKGTTNLGLMYKKTSEYK--LSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 1478
A+K +L+YL + L Y K ++ + L GY DADYAG+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1479 WASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQIFESNIPIYCDNTAAISLSKN 1538
W + +QS + LST +AEYI+ +W+K + + I + + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1539 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTK 1581
+ H R KHI+++ HFIRD ++ ++++ + ++ AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 116 bits (290), Expect = 8e-26
Identities = 81/240 (33%), Positives = 124/240 (50%), Gaps = 4/240 (1%)
Frame = -3
Query: 685 KNNIYKIRLSELEAQNVKCLL----SVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPN 740
K ++Y + + N KC S+N++ +WH RLGH R LNL+ LP
Sbjct: 674 KGDLYMLEKLD-PVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRA------LNLM--LPG 525
Query: 741 LKFASDALCETCQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIV 800
+ F + CE C GK K F + V + +L++ DL+ + S +Y + +
Sbjct: 524 VVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSRDNHKYFVTFI 354
Query: 801 DDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSY 860
D+ S++TW+ + KD F F A V N +I +RSD+GGE+ + F+S D +
Sbjct: 353 DEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHH 174
Query: 861 GIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVR 920
GI H SCP TPQQNGV +RKN+ L E+AR+++ + V+TACY+ N I +
Sbjct: 173 GILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTK 21
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 97.8 bits (242), Expect = 3e-20
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 1097 SIDEALQDKDWILAMKEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVRNK 1156
S+D + +D I K+ L LVKKP V IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 1157 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGY 1212
ARLVA+GY +Q+GID+ E FAPV R+E I LL++ + + +H +DVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 96.7 bits (239), Expect = 7e-20
Identities = 50/122 (40%), Positives = 74/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 1397 RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY---KKTSEYKLSGYCDA 1453
RPDI +SV + ++F DPR+ HL A RILRY++GT GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1454 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQL 1513
D+ GD R+STSG +SW +K+Q ALS+ EAEYI+ + Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1514 ED 1515
++
Sbjct: 472 KE 477
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 78.2 bits (191), Expect = 2e-14
Identities = 39/113 (34%), Positives = 66/113 (57%)
Frame = -2
Query: 910 ACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDPKSSKCLL 969
ACY+ NRI R + ++ P+E+ KP+++Y FGC+CYVL + +K + +S K +
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 970 LGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDK 1022
+GYS KG++ Y+ +A+ + S V+F ++ + K E DL+ SDK
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLT---SDK 375
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 74.7 bits (182), Expect = 3e-13
Identities = 50/145 (34%), Positives = 73/145 (49%), Gaps = 5/145 (3%)
Frame = -3
Query: 1391 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGY 1450
+ LT P+I FS++L +R+ S P H +K I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1451 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAI-----CSTQ 1505
+A Y D + +S +G G+ ++SW S + STIA S+ A Y+ + S
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA-YVQVIL*H*IRFSIT 175
Query: 1506 MLWMKHQLEDYQIFESNIPIYCDNT 1530
HQL + FE +I CD T
Sbjct: 174 KD*TNHQL--FIEFEKHIICLCDKT 106
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 72.0 bits (175), Expect = 2e-12
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Frame = +1
Query: 1246 QAPRAWYERLSSFLLENEFVRGKVDTTLFCK---TYKDDILIVQIYVDDIIFGSANQSLC 1302
Q+PR W++R + + + +++ + D +F K T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1303 KEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP 1362
K ++ EFE+ +G LKYFLG++V + +G+ I Q KY +LLK+ M+ + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1363 MHPTC 1367
C
Sbjct: 355 YGCNC 369
Score = 36.2 bits (82), Expect = 0.11
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 1354 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARF 1410
L+ ++TPM T L D V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.3 bits (168), Expect = 1e-11
Identities = 36/74 (48%), Positives = 47/74 (62%)
Frame = -2
Query: 1176 FAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVF 1235
F P+ +L I L+S N+ L +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*E-VGKMVG 378
Query: 1236 KLKKSLYGLKQAPR 1249
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 64.3 bits (155), Expect = 4e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +2
Query: 1527 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAED 1586
CD +A L+ NP+ HSR KHI + HF+RD VQ+G L ++ V T Q AD TKPL++
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1587 RFNFILKNLNM 1597
R + + +
Sbjct: 209 RHQLLRNKIGV 241
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 63.2 bits (152), Expect = 8e-10
Identities = 40/116 (34%), Positives = 58/116 (49%), Gaps = 3/116 (2%)
Frame = +3
Query: 567 LSMLQISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIIGTGT 626
L+M + P K+ W +DSGC+ HMT ++ +F+EL +V ++ G GT
Sbjct: 66 LAMSTFATKQPSKY--WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGT 239
Query: 627 ICVDSS---PCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVL 679
+ V S I NVL L +LLS+ QL KGY V+F + C Q + VL
Sbjct: 240 VLVKSHSGYKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVL 407
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.332 0.142 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,724,321
Number of Sequences: 36976
Number of extensions: 697476
Number of successful extensions: 4427
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 3260
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 3573
length of query: 1602
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1493
effective length of database: 4,984,343
effective search space: 7441624099
effective search space used: 7441624099
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0166.7