BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0162a.1
(118 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79209 weakly similar to GP|18655431|pdb|1JH7|A Chain A Semi-R... 183 7e-48
AL387685 27 1.5
TC88004 weakly similar to PIR|T04185|T04185 hypothetical protein... 26 2.5
BQ139295 similar to GP|2832315|gb|A translation release factor e... 26 2.5
BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 25 3.3
TC91456 similar to GP|6573149|gb|AAF17567.1| growth-regulating f... 25 3.3
BF520204 weakly similar to PIR|F86278|F86 hypothetical protein A... 25 3.3
TC92011 weakly similar to GP|10177896|dbj|BAB11228. gene_id:K16H... 25 3.3
TC90166 25 4.3
TC86614 similar to PIR|T06308|T06308 protein phosphatase 2C homo... 25 4.3
TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Ar... 25 5.7
TC79434 weakly similar to GP|21689735|gb|AAM67489.1 unknown prot... 25 5.7
BG585246 similar to GP|21593061|gb unknown {Arabidopsis thaliana... 25 5.7
BQ150221 25 5.7
TC88235 similar to GP|12656803|gb|AAK00964.1 unknown protein {Or... 24 7.4
BF648188 similar to GP|21903805|gb| hypothetical protein {Strept... 24 7.4
AW689352 similar to GP|9759220|dbj cell division protein FtsH {A... 24 7.4
TC87716 weakly similar to GP|5031283|gb|AAD38147.1| unknown {Pru... 24 9.6
TC78829 similar to PIR|T49017|T49017 hypothetical protein F3C22.... 24 9.6
TC87393 similar to PIR|G84825|G84825 probable CCCH-type zinc fin... 24 9.6
>TC79209 weakly similar to GP|18655431|pdb|1JH7|A Chain A Semi-Reduced
Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From
Arabidopsis Thaliana, partial (89%)
Length = 775
Score = 183 bits (465), Expect = 7e-48
Identities = 88/118 (74%), Positives = 102/118 (85%)
Frame = +1
Query: 1 MATTAIETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADD 60
MAT++I KKEVYSVWAIPP+ VR R+ KLMT LRS+FGGP FEPH+TVVGAI LT DD
Sbjct: 46 MATSSI---KKEVYSVWAIPPEDVRDRLTKLMTSLRSDFGGPQFEPHMTVVGAIELTPDD 216
Query: 61 ALNKLRSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSS 118
AL KLRSA E +K+FQVTVDRV+AGTFFYQCVYLLLHP+P ++ET+AHC HFGYK+S
Sbjct: 217 ALKKLRSASEGVKSFQVTVDRVSAGTFFYQCVYLLLHPTPQILETNAHCCTHFGYKNS 390
>AL387685
Length = 406
Score = 26.6 bits (57), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (46%), Gaps = 5/36 (13%)
Frame = +1
Query: 41 GPHFEPHITVVGAITLTADDA-----LNKLRSACEE 71
GPH HIT G T D A LNK++ EE
Sbjct: 91 GPHIPTHITATGLTGXTGDLALQ*RILNKVQRGSEE 198
>TC88004 weakly similar to PIR|T04185|T04185 hypothetical protein F7L13.80 -
Arabidopsis thaliana, partial (17%)
Length = 932
Score = 25.8 bits (55), Expect = 2.5
Identities = 17/59 (28%), Positives = 28/59 (46%)
Frame = +2
Query: 19 IPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELKAFQV 77
I P+H RP ++++ F I + I L+ D ++K+ ACEE FQ+
Sbjct: 221 ILPEHKRPHLSEVT-----------FSDSIPI---IDLSHLDVVHKISKACEEFGFFQI 355
>BQ139295 similar to GP|2832315|gb|A translation release factor eRF3
{Podospora anserina}, partial (9%)
Length = 668
Score = 25.8 bits (55), Expect = 2.5
Identities = 15/35 (42%), Positives = 17/35 (47%)
Frame = -3
Query: 68 ACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPV 102
AC KA V A GT + C +LLL PPV
Sbjct: 129 ACPGTKADAPGVKDAAPGTNAWGCCWLLLRFRPPV 25
>BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (24%)
Length = 1059
Score = 25.4 bits (54), Expect = 3.3
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 15 SVWAIPPDHVRPRI 28
++W++P DH+ PRI
Sbjct: 648 NLWSLPHDHIHPRI 607
>TC91456 similar to GP|6573149|gb|AAF17567.1| growth-regulating factor 1
{Oryza sativa}, partial (20%)
Length = 710
Score = 25.4 bits (54), Expect = 3.3
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = -1
Query: 83 AAGTFFYQCVYLLLHPSPP 101
+ TFF+Q Y+ L P PP
Sbjct: 503 STSTFFHQSSYIFLAPGPP 447
>BF520204 weakly similar to PIR|F86278|F86 hypothetical protein AAF43941.1
[imported] - Arabidopsis thaliana, partial (53%)
Length = 650
Score = 25.4 bits (54), Expect = 3.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 100 PPVVETSAHCSNHFG 114
P +V+T A CSNH G
Sbjct: 457 PQIVKTPAFCSNHIG 413
>TC92011 weakly similar to GP|10177896|dbj|BAB11228.
gene_id:K16H17.4~ref|NP_056993.1~similar to unknown
protein {Arabidopsis thaliana}, partial (2%)
Length = 1035
Score = 25.4 bits (54), Expect = 3.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 95 LLHPSPPVVETSAHCSNHF 113
LL P P++ + HCS+HF
Sbjct: 90 LLPPDFPILRPNHHCSSHF 34
>TC90166
Length = 1006
Score = 25.0 bits (53), Expect = 4.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 16 VWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGA 53
+W IPP V A M L+ + GPH E H+ V+ A
Sbjct: 381 LWMIPPKKVPKV*ASRMDRLQQFY*GPH*E-HMLVLAA 271
>TC86614 similar to PIR|T06308|T06308 protein phosphatase 2C homolog F11C18.60
- Arabidopsis thaliana, partial (92%)
Length = 1556
Score = 25.0 bits (53), Expect = 4.3
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 7/57 (12%)
Frame = -2
Query: 62 LNKLRSACEELKAFQVTVDRVAAGTF----FYQC---VYLLLHPSPPVVETSAHCSN 111
L+ S C+ +F D +AG F C + +L HPSPP V+ + H S+
Sbjct: 1261 LSTFGSTCDSAGSFDD--DCSSAGALD*AGFLNCTKIMVMLSHPSPPAVDGAKHRSS 1097
>TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Arabidopsis
thaliana}, partial (49%)
Length = 1143
Score = 24.6 bits (52), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 91 CVYLLLHPSPPVVETSAHC 109
C L HP P +VE S HC
Sbjct: 950 CTCPL*HPRPSIVE*SMHC 894
>TC79434 weakly similar to GP|21689735|gb|AAM67489.1 unknown protein
{Arabidopsis thaliana}, partial (20%)
Length = 1583
Score = 24.6 bits (52), Expect = 5.7
Identities = 12/39 (30%), Positives = 18/39 (45%)
Frame = +1
Query: 7 ETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFE 45
ET K + Y IPP +V+P + R+E H +
Sbjct: 1219 ETPKVKPYYSNGIPPPYVKPNSKLKTSTQRTELASSHID 1335
>BG585246 similar to GP|21593061|gb unknown {Arabidopsis thaliana}, partial
(49%)
Length = 731
Score = 24.6 bits (52), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 51 VGAITLTADDALNKLRSACEELKAFQVTVDRVAAGTFFYQCVYL 94
+G I +TA A NKL S + + A TFF + V+L
Sbjct: 212 LGIIHITATIAPNKLNSKSDTVATATPADTAAKAKTFFEEIVFL 81
>BQ150221
Length = 602
Score = 24.6 bits (52), Expect = 5.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 87 FFYQCVYLLLHPSP 100
FF+ C Y+ +HP P
Sbjct: 366 FFFNCDYIYIHPPP 325
>TC88235 similar to GP|12656803|gb|AAK00964.1 unknown protein {Oryza
sativa}, partial (91%)
Length = 1080
Score = 24.3 bits (51), Expect = 7.4
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 98 PSPPVVETSAH 108
PSPP VETS H
Sbjct: 67 PSPPAVETSGH 99
>BF648188 similar to GP|21903805|gb| hypothetical protein {Streptococcus
pyogenes MGAS315}, partial (17%)
Length = 627
Score = 24.3 bits (51), Expect = 7.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 20 PPDHVRPRIAKLMTDLRSEFGGPHFE 45
PP +RP + LMT SE+ H +
Sbjct: 322 PPGSIRPSL*SLMTSANSEYFS*HVD 245
>AW689352 similar to GP|9759220|dbj cell division protein FtsH {Arabidopsis
thaliana}, partial (17%)
Length = 547
Score = 24.3 bits (51), Expect = 7.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 93 YLLLHPSPPVVETSAHCSNHFGYKSS 118
YL+ HPSP + + H HF + S
Sbjct: 212 YLVQHPSPKTLIHTLHHHQHFQHHPS 135
>TC87716 weakly similar to GP|5031283|gb|AAD38147.1| unknown {Prunus
armeniaca}, partial (66%)
Length = 1297
Score = 23.9 bits (50), Expect = 9.6
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +3
Query: 60 DALNKLRSACEELKAFQV 77
+ L K+RSAC+E FQV
Sbjct: 264 EVLEKIRSACKEWGFFQV 317
>TC78829 similar to PIR|T49017|T49017 hypothetical protein F3C22.40 -
Arabidopsis thaliana, partial (31%)
Length = 1160
Score = 23.9 bits (50), Expect = 9.6
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +2
Query: 95 LLHPSPPVVETSAHCSNHFGYKSS 118
LLHPSPP+ S + G +SS
Sbjct: 167 LLHPSPPIFHLSTIHLHGIGPRSS 238
>TC87393 similar to PIR|G84825|G84825 probable CCCH-type zinc finger protein
[imported] - Arabidopsis thaliana, partial (16%)
Length = 975
Score = 23.9 bits (50), Expect = 9.6
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -3
Query: 9 QKKEVYSVWAIPPDHVRPRI 28
QKK+++S +A P+H++ +
Sbjct: 673 QKKQIFSTYAAHPNHLKSNL 614
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,123,090
Number of Sequences: 36976
Number of extensions: 49591
Number of successful extensions: 356
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of query: 118
length of database: 9,014,727
effective HSP length: 94
effective length of query: 24
effective length of database: 5,538,983
effective search space: 132935592
effective search space used: 132935592
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0162a.1