TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0151.7
         (1675 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ...   169  1e-70
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...   148  2e-35
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...   119  8e-27
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p...    77  5e-26
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...    99  2e-20
TC83528                                                                95  2e-19
BG647389                                                               69  1e-18
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ...    91  4e-18
AL367832 weakly similar to GP|14091845|gb Putative retroelement ...    84  5e-16
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...    79  1e-14
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro...    73  1e-12
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    67  8e-11
BE999414                                                               59  2e-08
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    45  2e-04
BG448304                                                               44  7e-04
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa...    42  0.002
TC92306                                                                42  0.002
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr...    36  0.11
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...    36  0.14
BQ137237 weakly similar to GP|11993889|gb| virion-associated nuc...    36  0.14

>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (13%)
          Length = 763

 Score =  169 bits (428), Expect(2) = 1e-70
 Identities = 77/136 (56%), Positives = 105/136 (76%)
 Frame = +2

Query: 786 MHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVK 845
           MHP D +KTAF+T R  YCY+ MPFGLKNAG+TYQRL++R+FA ++G  MEVY+DDM+VK
Sbjct: 2   MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181

Query: 846 SVRGLDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQ 905
           S+R  DH   L+E F  + ++ M+LNP KC+FGV  G+FLG+++T +GIE+NP +  AI 
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361

Query: 906 QMKNPSNVKEVQRLTG 921
            + +P N +EVQRLTG
Sbjct: 362 DLPSPKNSREVQRLTG 409



 Score =  117 bits (294), Expect(2) = 1e-70
 Identities = 56/118 (47%), Positives = 81/118 (68%)
 Frame = +3

Query: 921  GRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGH 980
            GRIAAL+RF+ +S D+  PF+K L  N  F W  +CEEAF +LK+ L++PP+LSKP  G 
Sbjct: 408  GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587

Query: 981  PLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARR 1038
             L LY A+S +A+SSV+++E  GE + I++ S  +   E RY  +EK A AV+ +AR+
Sbjct: 588  TLSLYIAISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
            alternata}, partial (21%)
          Length = 1540

 Score =  148 bits (373), Expect = 2e-35
 Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 3/317 (0%)
 Frame = +1

Query: 724  ANVVMVKKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQ 783
            A V+ V+K  G    CVDY  LN    KD YPLP I   +   +G    + +D  + +H+
Sbjct: 577  APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLRRVAGARWFTKLDVVAAFHK 756

Query: 784  IRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMI 843
            +R+   D++KTAF T    + +   PFGL  A AT+QR +++     +   +  Y+DD++
Sbjct: 757  MRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVL 936

Query: 844  VKSVRG-LDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITS-RGIEINPDKC 901
            + +     DH   +      +    + L+P+KC F V   K++GF++T+ +G+  +P K 
Sbjct: 937  IYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKL 1116

Query: 902  KAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFV 961
             AI+    P +VK  +   G       F+P   + + P  +  +K+  F W AE E AF 
Sbjct: 1117 AAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTRLTRKDFPFRWGAEQEAAFT 1296

Query: 962  RLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSVILQE-GDGEHRVIYFVSHTLQGAEV 1020
            +LK L +  P+L          +    S  AL  V+ QE G G    + F S  L  AE 
Sbjct: 1297 KLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDGTGAAHPVAFHSQRLSPAEY 1476

Query: 1021 RYKKIEKAALAVLVTAR 1037
             Y   +K  LAV    R
Sbjct: 1477 NYPIHDKELLAVWACLR 1527


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
            (10%)
          Length = 624

 Score =  119 bits (299), Expect = 8e-27
 Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 3/202 (1%)
 Frame = +2

Query: 1295 REASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSEVHEGMCASHIGGRSLACKVLRAG 1354
            ++   Y   +  LY++      ++CV  E+   I+   H    A H        K+ +AG
Sbjct: 5    KDVRRYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAG 184

Query: 1355 FYWPTLRKDCMDFVKKCKKCQVFADLS---KAPPKELVTMSAPWPFAMWGVDLVGPFPIA 1411
            F+WPT+ KD   F+ KC  CQ   ++S   + P   ++ +     F +WG+D +GPFP +
Sbjct: 185  FWWPTMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEV---FDVWGIDFMGPFPSS 355

Query: 1412 RSQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSN 1471
             +  K+ILVAVDY +KW+EA       +  +V  +   I  RFG+PR ++SD G+ F + 
Sbjct: 356  YNN-KYILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINK 532

Query: 1472 QTREFCREMGIQMRFASVEHPQ 1493
               +  ++ G++ + A+  HPQ
Sbjct: 533  VFEKLLKKNGVRHKVATAYHPQ 598


>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
            [imported] - Arabidopsis thaliana, partial (7%)
          Length = 686

 Score = 76.6 bits (187), Expect(2) = 5e-26
 Identities = 34/70 (48%), Positives = 49/70 (69%)
 Frame = -2

Query: 1455 GIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLK 1514
            G+P  IV+DNG+ F SN+ REFC    I++  AS  +PQ+NGQ E +N++I+ GL++RL 
Sbjct: 682  GLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRLD 503

Query: 1515 EAKGAWLEEL 1524
              KG W +EL
Sbjct: 502  LKKGCWADEL 473



 Score = 61.2 bits (147), Expect(2) = 5e-26
 Identities = 38/120 (31%), Positives = 64/120 (52%), Gaps = 7/120 (5%)
 Frame = -3

Query: 1527 VLWSYNTTVQSTTRETPFRMTYGVDAMLPAEIDNFTW---RTEPDFEGENQANMAAELDL 1583
            VLWS+ T  +  T+ TPF M + V+AM PAE++  +    R   + E  N     A L+ 
Sbjct: 465  VLWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNNDRLFNA-LET 289

Query: 1584 LSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVL----KWRSGASGNKLTPNWEG 1639
            + E RD+A +R    + ++ + +N  V+ + +++GD+VL    +     +  KL  NWEG
Sbjct: 288  IEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNWEG 109


>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (2%)
          Length = 592

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 53/128 (41%), Positives = 78/128 (60%)
 Frame = -2

Query: 1110 DTQWTLFVDGSSNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGLKLARE 1169
            +++W L  DG+ N+ G G G  +  P    +  + +  F+ TNN AEYEA I G++ A +
Sbjct: 543  NSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAID 364

Query: 1170 VKIGSLLIRTDSQLVENQVKGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEYVPRTENQRA 1229
            ++I  L I  DS LV NQ+KG ++    NLI Y +  R L+T F +V + ++PR ENQ A
Sbjct: 363  MRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMA 184

Query: 1230 DALAKLAS 1237
            DALA L+S
Sbjct: 183  DALATLSS 160


>TC83528 
          Length = 555

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 53/125 (42%), Positives = 80/125 (63%), Gaps = 4/125 (3%)
 Frame = +3

Query: 442 PIVVQLRMNS-FNVRRVLLDQGSSADIIYGDAFDKLGLTDKDLTPDAGTLVGFAGEQVMV 500
           P+V++L++N+ F+V RV ++  S  DI+Y  AF K+ L +  L P  G L G  G+ + V
Sbjct: 180 PMVIKLQINNNFSVLRVFVNPMSKVDILYWSAFLKMKLQESMLKPCQGFLKGTFGKGLPV 359

Query: 501 RGYIDLDTIFGEDECARVLKVRYLVLQ---VVASYNVIIGRNTLNRLCAVISTAHLAVKY 557
           +GYIDLDT FG+ E  + +KVRY V++    V+ YNV++G  +L  L AV+S A   +KY
Sbjct: 360 KGYIDLDTTFGKGENTKTIKVRYFVVESPPSVSIYNVVLGWPSLKDLKAVLSVAEFTIKY 539

Query: 558 PLSSG 562
           P+  G
Sbjct: 540 PVGDG 554


>BG647389 
          Length = 718

 Score = 68.6 bits (166), Expect(2) = 1e-18
 Identities = 33/85 (38%), Positives = 54/85 (62%)
 Frame = +1

Query: 69  KSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMAR 128
           K     W+  LPR SI+ +++ + K + QFSA+K+  V+  +L+N+RQ   ESL EY+  
Sbjct: 451 KEATQQWYMNLPRFSITGYQNMTHKLVHQFSASKHCKVSTTNLFNVRQDPNESLPEYLV* 630

Query: 129 YSAASVKVEDEEPRACALAFKNGLL 153
           ++ A++KV + +    A AF+NGLL
Sbjct: 631 FNNATIKVVNPKQELFAGAFQNGLL 705



 Score = 44.7 bits (104), Expect(2) = 1e-18
 Identities = 19/52 (36%), Positives = 33/52 (62%)
 Frame = +2

Query: 10  RPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKC 61
           +P S D+ +  + +N+K+L L S+   SDP +H   FNT+M +I A  +++C
Sbjct: 278 QPLSMDIWNAPVLENLKSLSLLSFDDKSDPVEHATTFNTQMAVIGALKSLRC 433


>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (13%)
          Length = 415

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 48/119 (40%), Positives = 74/119 (61%)
 Frame = +3

Query: 1129 GVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIGSLLIRTDSQLVENQV 1188
            G+ L  P + +L+QS + EF A+NN+  YEALIAG++LA  +KI ++    DSQLV +Q 
Sbjct: 3    GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182

Query: 1189 KGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEYVPRTENQRADALAKLASTRKPDNNRSV 1247
             G ++ +D  +  YL+ V+ L        +  +PR+EN +ADALA LAS+  P+  R +
Sbjct: 183  SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALASSSDPELKRVI 359


>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
           sativa}, partial (2%)
          Length = 384

 Score = 84.0 bits (206), Expect = 5e-16
 Identities = 42/104 (40%), Positives = 61/104 (58%)
 Frame = -1

Query: 631 RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSVKPVSQLR 690
           R +K+G  L E  + ++ +LL E LD+FA S +DMPG+DP  + HR+   P   PV    
Sbjct: 312 REIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMPGLDPKIVEHRIPTKPECPPVR*KL 133

Query: 691 RRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG 734
           RR   D    ++ EV K + A F+  V+YP W+AN+V V K +G
Sbjct: 132 RRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG 1


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 57/181 (31%), Positives = 86/181 (47%)
 Frame = +2

Query: 679 LNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWLM 738
           L P++ P+     R+   K K ++ ++  LL   FI+   YP  +  V+ +KK +G   M
Sbjct: 53  LLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKKDGFLRM 229

Query: 739 CVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMT 798
            +DY  LN    K  YPLP ID L D   G++    +D   G HQ R+   D  KTAF  
Sbjct: 230 SIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVPKTAFRI 409

Query: 799 ARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEE 858
              +Y    M FG  N    +  LM+RVF   +   + V+ +D+++ S    +H   L  
Sbjct: 410 RYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEHENHLRL 589

Query: 859 A 859
           A
Sbjct: 590 A 592


>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
            blast fungus gypsy retroelement (fragment), partial (14%)
          Length = 1708

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 77/302 (25%), Positives = 125/302 (40%), Gaps = 8/302 (2%)
 Frame = +2

Query: 1328 IMSEVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKE 1387
            ++ E H+   A H  GR+   +++   F+WP   +    FV+ C  C       +A    
Sbjct: 179  LVQESHDSTAAGH-PGRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVCGGIHIWRQAKRGF 355

Query: 1388 LVTMSAPWPF-AMWGVDLVGPFPIARSQ-MKFILVAVDYFTKWIEAEPLAKITSAKIVNF 1445
            L  +  P    +   +D +   P  R +  +++ V VD  +K +  E +  + +      
Sbjct: 356  LKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAEACAQR 535

Query: 1446 YWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVI 1505
            +        G+P++IVSD G+ +     REFCR  G+    ++  HPQ +G  E  N+ I
Sbjct: 536  FLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTERWNQEI 715

Query: 1506 LRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLPAEIDNFTWRT 1565
               LR  +  ++  W + LP V  +      S+   TPF + +G        +D     T
Sbjct: 716  QAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGY------HVDPIP--T 871

Query: 1566 EPDFEGENQANMAAELDLLSETRD-----EAHIRETAMKQRVAAKFNSRVRVRD-MQVGD 1619
              D  G      AA   L+   +D     +A I   A +QR  A  N R    D  QVGD
Sbjct: 872  VEDTGGVVSEGEAAAQLLVKRMKDVTGFIQAEI--VAAQQRSEASANKRRCPADRYQVGD 1045

Query: 1620 LV 1621
             V
Sbjct: 1046 KV 1051


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
            chromosome II BAC F26H6; putative retroelement pol
            polyprotein, partial (1%)
          Length = 636

 Score = 66.6 bits (161), Expect = 8e-11
 Identities = 45/167 (26%), Positives = 74/167 (43%), Gaps = 29/167 (17%)
 Frame = -2

Query: 1027 KAALAVLVTARRLRPYFQSFPVRVRTDL-PLRQVLQKPDMSGRLVAWSVELSEYGLQYDK 1085
            K   A+   A+RLR Y  +    + + + P++ + +KP ++GR+  W + LSEY ++Y  
Sbjct: 635  KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456

Query: 1086 RGKVGAQSLADFVV-----ELTPDRFERVDTQ-----------------------WTLFV 1117
            +  +    LAD +      +  P +F+  D +                       W L  
Sbjct: 455  QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276

Query: 1118 DGSSNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGL 1164
            DG+ N  G+G G  L  P    +  + +  F  TNN AEYEA I G+
Sbjct: 275  DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135


>BE999414 
          Length = 613

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 26/76 (34%), Positives = 41/76 (53%)
 Frame = +3

Query: 30  LDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRD 89
           +DSY G  DP +H+      +   +   AVKC++F +T +  AM WF  L R SI ++ D
Sbjct: 9   MDSYDGT*DPDEHMENIEVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGD 188

Query: 90  FSSKFLVQFSANKNQP 105
              +F   F+ ++ QP
Sbjct: 189 LCHEFTTHFTVSRTQP 236


>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = -1

Query: 724 ANVVMVKKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVD 764
           A ++ V+K +G + MC+DY   NK   K+ YPLP ID+L D
Sbjct: 238 AALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFD 116


>BG448304 
          Length = 637

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
 Frame = +2

Query: 284 PEAPKYQSRDANPKKWCEFHRSAGHGTDDCWTLQREIDKLIRAGYQGNRQGQWRNNGDHN 343
           P+ P  +++  +  K+C FH+   H TDDC  L+  I+ LI+ G    R  Q   N +  
Sbjct: 65  PKTPTQENKGTDKTKYCRFHKCHRHLTDDCIHLKDTIEILIQRG----RLNQLTKNPEPE 232

Query: 344 KTHKREEERVDTKGKKKQESAAIATRGADDTFAQH--------SGPPVGTINTIAGG 392
           K    +  ++ T  K K    A++    D+ F +H        +  P  T N I GG
Sbjct: 233 K----QTVKLITDKKNKDIVVAMSVEQLDE-FVEHVDITPYSCTWEPFPTANVITGG 388


>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
            {Arabidopsis thaliana}, partial (21%)
          Length = 1071

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
 Frame = +2

Query: 1134 GPGDLVLEQ--SLKFEFKA-----TNNQAEYEALIAGLKLAREVKIGSLLIRTDSQLVEN 1186
            G G L+L +  SL + F+      T   AEY AL+ GLK A       +  + DS+LV N
Sbjct: 602  GAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFKYVTAKGDSELVIN 781

Query: 1187 QVKGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEYVPRTENQRA 1229
            Q+   +++KD +L K       L   F    ++++ R  N  A
Sbjct: 782  QILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERNYGA 910


>TC92306 
          Length = 521

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 28/73 (38%), Positives = 37/73 (50%)
 Frame = +2

Query: 1161 IAGLKLAREVKIGSLLIRTDSQLVENQVKGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEY 1220
            I GL  AR      + +R D Q V  Q  G+++V +PNL         L + F+ V VE+
Sbjct: 2    ILGLNEARNQGYEHVHVRGDFQXVCKQFXGSWKVNNPNLRNLCNXAVELKSNFKSVSVEH 181

Query: 1221 VPRTENQRADALA 1233
            VPR  N  ADA A
Sbjct: 182  VPRGXNXAADAQA 220


>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
            sativa (japonica cultivar-group)}, partial (7%)
          Length = 674

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +2

Query: 1470 SNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLW 1529
            SN  ++  +  G  +  +S  HP ++GQ E  N+     LR  +      W +  P   +
Sbjct: 32   SNFWKQLFKLHGTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEY 211

Query: 1530 SYNTTVQSTTRETPFRMTYGVD 1551
             YNT+   +   TPF+  YG D
Sbjct: 212  WYNTSYNISAAMTPFKALYGRD 277


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
            {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
            partial (10%)
          Length = 823

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +1

Query: 1458 RAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEA- 1516
            + +++DN  +F S+   EFC   GI        +PQ NG  E   R +L   R  L  A 
Sbjct: 289  KKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAG 468

Query: 1517 ----KGAWLE 1522
                +  W+E
Sbjct: 469  L*N*RDLWVE 498


>BQ137237 weakly similar to GP|11993889|gb| virion-associated
           nuclear-shuttling protein {Mus musculus}, partial (4%)
          Length = 1215

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 19/66 (28%), Positives = 33/66 (49%)
 Frame = +2

Query: 190 RKRAKLEKGDTSPKRAKKDKNGEDKGDGKQQRQDKGKAALRPTKEQLYPRRDDYEQRRPW 249
           R R + +KG+ + +  ++D N       +   Q++ KAA +     ++ +RDD E RR  
Sbjct: 833 RTRRQTKKGEAAERARRRDDNRTHSHTHRAPTQNQTKAAEQRPSNTVHKKRDDRENRRRM 1012

Query: 250 QSKSHR 255
           Q  S R
Sbjct: 1013QQASTR 1030


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,202,690
Number of Sequences: 36976
Number of extensions: 601334
Number of successful extensions: 2925
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2914
length of query: 1675
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1566
effective length of database: 4,984,343
effective search space: 7805481138
effective search space used: 7805481138
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)