BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0151.11
(1562 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 190 2e-66
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 175 1e-43
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 174 3e-43
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 172 1e-42
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 162 1e-39
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 159 8e-39
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 132 1e-30
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 113 7e-25
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 111 2e-24
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 96 8e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 86 1e-16
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 80 6e-15
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 75 2e-13
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 73 8e-13
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 72 2e-12
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 70 5e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 69 2e-11
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 62 1e-09
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 61 4e-09
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 60 9e-09
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 190 bits (482), Expect(2) = 2e-66
Identities = 90/141 (63%), Positives = 115/141 (80%)
Frame = -2
Query: 1173 VVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1232
+ RNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+LI+F+ L+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1233 YISEEVYVHQPLGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1292
+ EEV+V QP GFED + P+HVF+L K+LYGLKQAPRAWYERLS FLL+N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1293 TLFCKTYKDDILIVQIYVDDI 1313
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 2e-66
Identities = 37/64 (57%), Positives = 49/64 (75%)
Frame = -3
Query: 1104 LLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVF 1163
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +PE VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 1164 RNKL 1167
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 175 bits (443), Expect = 1e-43
Identities = 87/199 (43%), Positives = 129/199 (64%)
Frame = +1
Query: 1348 IQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGM 1407
++V Q EG YI Q KY +LL++F M +S +++ P+ P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1408 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTSEYK 1467
+G L+YL A+RPD+++ + L +RF + P E H+ A+KR+LRYL GT NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1468 LSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSVRP 1527
L Y D+ YAGD +RKSTSG L S VSW+SK+Q + LST +AE+I+AA C+ +
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1528 GFSEQVNFRLTRRISVSVT 1546
+ +V +L S S+T
Sbjct: 541 VWMRRVLEKLGYTQSGSIT 597
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 174 bits (440), Expect = 3e-43
Identities = 93/248 (37%), Positives = 146/248 (58%), Gaps = 3/248 (1%)
Frame = +3
Query: 1115 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 1174
+P + +EA++ + W +M E+ +N+ W L IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1175 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYI 1234
+ KARLVA+GYSQQ G+DYTE FAPVAR + IR++I+ + + S +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQ---IKRDGVCIS*M*KAHS 389
Query: 1235 SEEVYVHQPLGFEDEKKPDHVF--KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1292
E + + L V ++K++LYGLKQAPRAWY R+ ++ + F + +
Sbjct: 390 CMEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEH 569
Query: 1293 TLFCKTYK-DDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVD 1351
TLF K + ILI+ +YVDD+IF ++++ +EF + M+ EF MS +G++ YFLG++V
Sbjct: 570 TLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVT 749
Query: 1352 QTPEGTYI 1359
Q +G YI
Sbjct: 750 QNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 172 bits (435), Expect = 1e-42
Identities = 96/218 (44%), Positives = 128/218 (58%), Gaps = 3/218 (1%)
Frame = +1
Query: 1107 LKGLVSLIEPKSID---EALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVF 1163
LK V L EP D L D W+ AM+ E N W LV P IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 1164 RNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQM 1223
R K N G V + KARLVA+G+SQ G DYTETF+PV + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 1224 DVKSAFLNGYISEEVYVHQPLGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN 1283
D+ +AFLNG++ EEVY+ QP GFE K V KL KSLYGLKQAPRAWYE L+S ++
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 1284 EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQS 1321
F + + D +L + + IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 162 bits (409), Expect = 1e-39
Identities = 80/183 (43%), Positives = 117/183 (63%)
Frame = -1
Query: 1116 PKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVR 1175
P+S +EA++DK+W ++ E KND W + P+ + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1176 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYIS 1235
K RLVA+G++ G DY ETFAPVA+L IR+++S +VN L QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1236 EEVYVHQPLGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLF 1295
+EVY++ P G E K +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1296 CKT 1298
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 159 bits (402), Expect = 8e-39
Identities = 90/241 (37%), Positives = 133/241 (54%)
Frame = +2
Query: 1255 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1314
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1315 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNM 1374
+ S + + F++ +G L+YFLG++V ++ +G ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1375 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 1434
L TP + L D + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1435 PRETHLTAIKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAHYAGDRTERKSTSGNCQFLG 1494
P++ H A R+L+YLK GL Y TS KLS + D+ +A T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 1495 S 1495
S
Sbjct: 740 S 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 132 bits (332), Expect = 1e-30
Identities = 82/255 (32%), Positives = 127/255 (49%), Gaps = 8/255 (3%)
Frame = +1
Query: 763 GLPNLKFASDALCEACQKG-KFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRY 821
G+ L+F L +K F+ + K + L+ +H DL+GP K S GG+RY
Sbjct: 1 GIDKLEFCKHLLFFGNRKKVSFSTATHRTKGI------LDYIHSDLWGPSKVTSYGGRRY 162
Query: 822 GMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDH-----GGEFES 876
M I+DD+ R WV FL K+E+ F + V+ + + ++ +D+ +F
Sbjct: 163 MMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNE 342
Query: 877 LFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGM--AKHFLAEAVNTACYI 934
++GIA + PR PQQNGV ER RTL E AR ML G+ + EA +TAC++
Sbjct: 343 FCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHL 522
Query: 935 QNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYS 994
NR + K P ++W + S FGC Y L +L ++ +C+ L Y+
Sbjct: 523 VNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKL---APRAGECIFLSYA 693
Query: 995 ERSKGFRFYNTDAKT 1009
SKG+R + +D K+
Sbjct: 694 SESKGYRLWCSDPKS 738
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza sativa}
[Oryza sativa (japonica cultivar-group)], partial (8%)
Length = 426
Score = 113 bits (282), Expect = 7e-25
Identities = 57/113 (50%), Positives = 68/113 (59%)
Frame = +1
Query: 892 TPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYEL 951
TPQQNGV ER NRTL E R ML+ GMAK F AEAV TACY+ NR I KTP E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 952 WKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 1004
WK + S H FGC YV+ K D KS KC+ LGY++ KG+ ++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 111 bits (278), Expect = 2e-24
Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 9/240 (3%)
Frame = -3
Query: 711 KNNIYKIRLSELEAQNVKCLL----SVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPN 766
K ++Y + + N KC S+N++ +WH RLGH R LNL+ LP
Sbjct: 674 KGDLYMLEKLD-PVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRA------LNLM--LPG 525
Query: 767 LKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIV 826
+ F + CEAC GK K F + V + +L++ DL+ + S +Y + +
Sbjct: 524 VVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSRDNHKYFVTFI 354
Query: 827 DDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGE-----FESLFDSY 881
D+ S++TW+ + KD F F A V N +I +RSD+GGE F+S D +
Sbjct: 353 DEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHH 174
Query: 882 GIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVR 941
GI H SCP TPQQNGV +RKN+ L E+AR+++ + V+TACY+ N I +
Sbjct: 173 GILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTK 21
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 96.3 bits (238), Expect = 8e-20
Identities = 49/116 (42%), Positives = 73/116 (62%)
Frame = +2
Query: 1118 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNK 1177
S+D + +D I ++ L LVKKP V IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 1178 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGY 1233
ARLVA+GY +Q+GID+ E FAPV R+E I LL++ + + +H +DVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 85.9 bits (211), Expect = 1e-16
Identities = 46/110 (41%), Positives = 66/110 (59%), Gaps = 3/110 (2%)
Frame = +1
Query: 1418 RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMY---KKTSEYKLSGYCDA 1474
RPDI +SV + ++F DPR+ HL A RILRY++GT GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1475 HYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICS 1524
+ GD R+STSG +SW +K+Q ALS+ EAEYI+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFAT 441
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 80.1 bits (196), Expect = 6e-15
Identities = 40/113 (35%), Positives = 67/113 (58%)
Frame = -2
Query: 931 ACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLL 990
ACY+ NRI R + ++ P+E+ KP+++Y FGC+CYVL + +K +A+S K +
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 991 LGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDK 1043
+GYS KG++ Y+ +A+ + S V+F ++ + K E DL+ SDK
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLT---SDK 375
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 75.1 bits (183), Expect = 2e-13
Identities = 39/87 (44%), Positives = 56/87 (63%)
Frame = +1
Query: 1443 IKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWAS 1502
+KRI+RY+KGT+ + + + SE + GY D+ +AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1503 KRQSTIALSTAEAEYISAAICSVRPGF 1529
K Q+ +ALST EAEY++A + R F
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 73.2 bits (178), Expect = 8e-13
Identities = 40/104 (38%), Positives = 58/104 (55%)
Frame = -3
Query: 1412 LYLTASRPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTSEYKLSGY 1471
+ LT P+I FS++L +R+ S P H IK I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1472 CDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 1515
+A Y D + +S +G G+ ++SW S + STIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 72.0 bits (175), Expect = 2e-12
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Frame = +1
Query: 1267 QAPRAWYERLSSFLLENEFVRGKVDTTLFCK---TYKDDILIVQIYVDDIIFGSANQSLC 1323
Q+PR W++R + + + +++ + D +F K T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1324 KEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP 1383
K ++ EFE+ +G LKYFLG++V + +G+ I Q KY +LLK+ M+ + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1384 MHPTC 1388
C
Sbjct: 355 YGCNC 369
Score = 36.2 bits (82), Expect = 0.10
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 1375 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARF 1431
L+ ++TPM T L D V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 70.5 bits (171), Expect = 5e-12
Identities = 44/149 (29%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Frame = +1
Query: 8 YNAKP-PMFDGQRFEYWKDRMESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTADQ 66
Y A P P+FDG+ + W R+E++ DLW+ + + YE +D P +
Sbjct: 160 YKAPPLPVFDGENYHIWAARIEAYLEA--NDLWEAVEEDYEVLPLSDN---PTMAQIKNH 324
Query: 67 KKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFESLKMSHEGNKKVKESKALSLIQK 126
K+ ++ KARA L +A+S E + +I + A I+ LK +EG+++++ +AL+LI++
Sbjct: 325 KERKTRKSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNLIRE 504
Query: 127 YESFIMEPNESIEEMFSRFQLLVAGIRPL 155
+E M+ +E+I+E ++ + +R L
Sbjct: 505 FEMQKMKESETIKEYANKLISIANKVRLL 591
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 68.6 bits (166), Expect = 2e-11
Identities = 36/74 (48%), Positives = 47/74 (62%)
Frame = -2
Query: 1197 FAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPLGFEDEKKPDHVF 1256
F P+ +L I L+S N+ L +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*E-VGKMVG 378
Query: 1257 KLKKSLYGLKQAPR 1270
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 62.4 bits (150), Expect = 1e-09
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Frame = +3
Query: 582 KDQESGYLRTRLSMLQISLIAPLKHQSWYLDSGCSRHMTGESRMFQELKLKPGGEVGFGG 641
K + G L+M + P K+ W +DSGC+ HMT + +F+EL +V
Sbjct: 33 KPHQ*GSKEQLLAMSTFATKQPSKY--WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLN 206
Query: 642 NEKGKIVGTGTICVDSS---PCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVS 698
++ G GT+ V S I NVL L +LLS+ QL KGY V+F + C
Sbjct: 207 GAHIEVEGIGTVLVKSHSGYKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKD 386
Query: 699 QIDGSVL 705
Q + VL
Sbjct: 387 QNNKEVL 407
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 60.8 bits (146), Expect = 4e-09
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 1442 AIKRILRYLKGTTNLGLMYKKTSEYK--LSGYCDAHYAGDRTERKSTSGNCQFLGSNLVS 1499
A+K +L+YL + L Y K ++ + L GY DA YAG+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1500 WASKRQSTIALSTAEAEYIS 1519
W + +QS + LST +AEYI+
Sbjct: 184 WKANQQSVVTLSTTQAEYIA 243
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 59.7 bits (143), Expect = 9e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = -1
Query: 1234 ISEEVYVHQPLGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1279
+ E++Y+ QP GF K DHV KL+KSLYGLKQ+PR WY+R S+
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,786,342
Number of Sequences: 36976
Number of extensions: 652962
Number of successful extensions: 3728
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 3548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3666
length of query: 1562
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1453
effective length of database: 4,984,343
effective search space: 7242250379
effective search space used: 7242250379
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0151.11