BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0150.5
(168 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89552 homologue to GP|21593264|gb|AAM65213.1 flower pigmentati... 102 7e-23
TC93713 homologue to GP|6752886|gb|AAF27919.1| Ttg1-like protein... 61 2e-10
TC88436 similar to GP|9293867|dbj|BAB01770.1 DEAD-Box RNA helica... 31 0.27
TC90788 similar to PIR|F86340|F86340 protein F2D10.34 [imported]... 30 0.35
BQ151168 28 1.3
TC79214 similar to GP|15706274|emb|CAC69997. HMG I/Y like protei... 28 1.7
TC89384 similar to GP|15450417|gb|AAK96502.1 At1g26300/F28B23_4 ... 28 2.3
TC86245 weakly similar to GP|9279671|dbj|BAB01228.1 transport in... 28 2.3
BE248541 similar to GP|11141605|gb| LEUNIG {Arabidopsis thaliana... 27 3.0
TC79795 similar to GP|12382274|gb|AAG53092.1 glycoprotein I {Pse... 27 3.0
BE322935 similar to GP|18073605|emb hypothetical protein {Grapev... 27 3.9
TC81576 weakly similar to GP|12039277|gb|AAG46067.1 hypothetical... 27 3.9
BF638475 similar to GP|9502414|gb| peroxisomal targeting signal ... 27 3.9
TC91931 weakly similar to PIR|T47879|T47879 hypothetical protein... 27 3.9
TC82302 similar to PIR|F84663|F84663 probable nitrate transporte... 27 3.9
TC83962 similar to PIR|B86289|B86289 hypothetical protein AAF719... 26 6.6
TC85413 similar to PIR|S23737|S23737 proline-rich protein precur... 26 6.6
TC77267 similar to GP|9759559|dbj|BAB11161.1 nucleoid DNA-bindin... 22 6.8
BQ751419 weakly similar to GP|21629340|gb L509.2 {Leishmania maj... 26 8.6
BF003438 weakly similar to GP|22136796|gb| unknown protein {Arab... 26 8.6
>TC89552 homologue to GP|21593264|gb|AAM65213.1 flower pigmentation protein
ATAN11 {Arabidopsis thaliana}, partial (63%)
Length = 696
Score = 102 bits (254), Expect = 7e-23
Identities = 66/143 (46%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Frame = +3
Query: 33 NWSVRHDKKYHLAIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*G 92
NWSVR DKKY LAIASLLEQ PN +EIV LDD+ + P+ + H
Sbjct: 105 NWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTTGE---IKSDPNLSFEH---------- 245
Query: 93 VPAPRPPRHLQRLPPRVA---DLRRR*NPTLR------------RNPSVDLKSLLNGNKS 137
P PP +P + DL + LR + +V+LK+LLNGNK+
Sbjct: 246 ---PYPPTKSIFIPDKDCQRPDLLATSSDFLRIWRISDSDESASDSRAVELKTLLNGNKN 416
Query: 138 SEYCGPLTSFDWNEAEPCRIGTS 160
SEYCGP+TSFDWNEAEP RIGTS
Sbjct: 417 SEYCGPITSFDWNEAEPRRIGTS 485
>TC93713 homologue to GP|6752886|gb|AAF27919.1| Ttg1-like protein {Malus x
domestica}, partial (46%)
Length = 637
Score = 60.8 bits (146), Expect = 2e-10
Identities = 43/128 (33%), Positives = 58/128 (44%), Gaps = 11/128 (8%)
Frame = +2
Query: 44 LAIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQ 103
+A+ S +E+ N I+I+ N D + P P P PP L
Sbjct: 170 IAVGSFIEEYTNRIDIL-----NFNPDTLSLKPQ-----------PSLSFDHPYPPTKLM 301
Query: 104 RLPPRVADLRRR*NPTLR-----------RNPSVDLKSLLNGNKSSEYCGPLTSFDWNEA 152
P + L++ + L R SV+ SL N +K+SE+C PLTSFDWNE
Sbjct: 302 FHPATHSSLQKTSSDLLATSGDYLRLWEVRENSVEALSLFNNSKTSEFCAPLTSFDWNEI 481
Query: 153 EPCRIGTS 160
EP RIGTS
Sbjct: 482 EPKRIGTS 505
>TC88436 similar to GP|9293867|dbj|BAB01770.1 DEAD-Box RNA helicase-like
protein {Arabidopsis thaliana}, partial (38%)
Length = 1024
Score = 30.8 bits (68), Expect = 0.27
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 87 LHPR*GVPAPRPPRHLQRLPPRVADLRRR*NP-TLRRNP 124
L P GVP+P PPR PP ++ + + +P TL NP
Sbjct: 95 LQPSHGVPSPPPPRFSSPPPPPLSSVTSQQDPSTLNHNP 211
>TC90788 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana, partial (52%)
Length = 745
Score = 30.4 bits (67), Expect = 0.35
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = -2
Query: 5 RKTSQRTTRLSETSHRPVESKAAKYQTKNWSV 36
R +QR T +S T+H +SKAA+ TK+ S+
Sbjct: 201 RSQAQRATAMSPTTHIKAQSKAARITTKSDSI 106
>BQ151168
Length = 1011
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/28 (39%), Positives = 14/28 (49%)
Frame = -3
Query: 63 DDSNARSDPTRISPSSTRTHHQGHLHPR 90
DD+ ++ TR P HH H HPR
Sbjct: 343 DDARTHTNETRHGPRPPTCHHTPHSHPR 260
>TC79214 similar to GP|15706274|emb|CAC69997. HMG I/Y like protein
{Glycine max}, partial (24%)
Length = 911
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 75 SPSSTRTHHQGHLHPR*GVPA 95
SPS+T THH+ LH G P+
Sbjct: 53 SPSTTSTHHRSQLHSPRGTPS 115
>TC89384 similar to GP|15450417|gb|AAK96502.1 At1g26300/F28B23_4
{Arabidopsis thaliana}, partial (46%)
Length = 801
Score = 27.7 bits (60), Expect = 2.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 93 VPAPRPPRHLQRLPPRVADLRRR*NPTLRRNP 124
+ +P+PPR+ + PP++ + R NP L P
Sbjct: 221 ISSPKPPRNPKNSPPKLPRKQMRSNPPLSVKP 316
>TC86245 weakly similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
response-like protein {Arabidopsis thaliana}, partial
(80%)
Length = 2260
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = -1
Query: 128 LKSLLNGNKSSEYCGPLTSFDWNEAEP 154
L LLN SSEYC P++S++ NE P
Sbjct: 1288 LLQLLNARSSSEYC*PVSSWE-NEPVP 1211
>BE248541 similar to GP|11141605|gb| LEUNIG {Arabidopsis thaliana}, partial
(10%)
Length = 376
Score = 27.3 bits (59), Expect = 3.0
Identities = 18/63 (28%), Positives = 28/63 (43%)
Frame = +3
Query: 87 LHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRRNPSVDLKSLLNGNKSSEYCGPLTS 146
LH G +P+ Q+LP D++ NP L + SLL + S+++ LT
Sbjct: 165 LHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQWNNNLTL 344
Query: 147 FDW 149
W
Sbjct: 345 KGW 353
>TC79795 similar to GP|12382274|gb|AAG53092.1 glycoprotein I {Pseudorabies
virus Ea}, partial (4%)
Length = 776
Score = 27.3 bits (59), Expect = 3.0
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 64 DSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPP-RVADLRRR*NPTLRR 122
D+ ARS S+ + Q ++PR P P P + Q LPP R +RR + L
Sbjct: 134 DAGARSPGAESDRSNFTSISQRGVNPRWNPPPPMPG-YGQGLPPRRPPPQQRRQDVLLNN 310
Query: 123 NPSVDL 128
NP +L
Sbjct: 311 NPDFEL 328
>BE322935 similar to GP|18073605|emb hypothetical protein {Grapevine fleck
virus}, partial (21%)
Length = 698
Score = 26.9 bits (58), Expect = 3.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 65 SNARSDPTRISPSSTRTHHQGHLHPR*GVPAP--RPPRHLQRLPP 107
S + S P + S+++TH HLHP G +P P L PP
Sbjct: 137 SPSLSQP*SATSSASKTHAPPHLHPTVGSTSPSFTNPSSLSSPPP 271
>TC81576 weakly similar to GP|12039277|gb|AAG46067.1 hypothetical protein
{Oryza sativa}, partial (25%)
Length = 537
Score = 26.9 bits (58), Expect = 3.9
Identities = 19/55 (34%), Positives = 26/55 (46%)
Frame = +2
Query: 45 AIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPP 99
A + LE+C +CI + DD + DP I PS + HP+ P P PP
Sbjct: 200 AFFASLERC-SCINLSTSDDPD---DPLLILPSDSNRFSDDSSHPQ---PQPPPP 343
>BF638475 similar to GP|9502414|gb| peroxisomal targeting signal type 2
receptor Pex7p {Arabidopsis thaliana}, partial (45%)
Length = 511
Score = 26.9 bits (58), Expect = 3.9
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = +2
Query: 51 EQCPNCIEIV*LDDSNARS--DPTR-----ISPSSTRTHHQGHL----HPR*GVPAPRPP 99
EQ PN * + SN S +P + I P ++H + H HPR P+PRP
Sbjct: 5 EQTPNTHSST*PNPSNDASF*NPIQRLLRQIQPFLRKSHRRRHRSKLRHPR-QRPSPRPR 181
Query: 100 RHLQRLPPRVADLRRR 115
LQ PP + R R
Sbjct: 182 TLLQSRPPNHRNRRLR 229
>TC91931 weakly similar to PIR|T47879|T47879 hypothetical protein T4C21.90 -
Arabidopsis thaliana, partial (10%)
Length = 714
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 86 HLHPR*GVPAPRPPRHLQRLP 106
HLHP+ P P P RH +RLP
Sbjct: 329 HLHPKRHPPLPHPKRH-RRLP 388
>TC82302 similar to PIR|F84663|F84663 probable nitrate transporter
[imported] - Arabidopsis thaliana, partial (51%)
Length = 1133
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +2
Query: 149 WNEAEPCRIGTSLTCRR 165
W + PCRI SL CRR
Sbjct: 344 WEFSNPCRISYSLLCRR 394
>TC83962 similar to PIR|B86289|B86289 hypothetical protein AAF71991.1
[imported] - Arabidopsis thaliana, partial (11%)
Length = 679
Score = 26.2 bits (56), Expect = 6.6
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 82 HHQGHLHPR*GVPAPRPPRHLQRLPP 107
HHQ H HPR P P H QRL P
Sbjct: 177 HHQPHSHPRRPHPTTCHP-HDQRLQP 251
>TC85413 similar to PIR|S23737|S23737 proline-rich protein precursor -
kidney bean, partial (56%)
Length = 1139
Score = 26.2 bits (56), Expect = 6.6
Identities = 14/42 (33%), Positives = 16/42 (37%), Gaps = 5/42 (11%)
Frame = +1
Query: 71 PTRISPSSTRTHHQGHLHPR*GVPAPRP-----PRHLQRLPP 107
P + P + HH H H PAP P P H PP
Sbjct: 154 PAPLHPPANAPHHHHHHHIHSPTPAPTPTPSPSPIHTPLHPP 279
>TC77267 similar to GP|9759559|dbj|BAB11161.1 nucleoid DNA-binding-like
protein {Arabidopsis thaliana}, partial (90%)
Length = 1653
Score = 22.3 bits (46), Expect(2) = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 124 PSVDLKSLLNGNKSSEYCGPLTSFDWN 150
P + +S +G K S C P T D+N
Sbjct: 137 PHLGHQSHCHGKKVSSKCKPKTQLDFN 217
Score = 21.9 bits (45), Expect(2) = 6.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 82 HHQGHLHPR*GVPAPRPPRHLQRLPPR 108
HH+ H P +P P P Q PR
Sbjct: 12 HHETHTFPLVPIPLPSPRTKPQM*CPR 92
>BQ751419 weakly similar to GP|21629340|gb L509.2 {Leishmania major}, partial
(1%)
Length = 766
Score = 25.8 bits (55), Expect = 8.6
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +2
Query: 71 PTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR 115
P R T T H H PR P PR L+ L PRV L RR
Sbjct: 2 PYRNPQPQTSTQHGSH-QPR---PRPRRDPRLRPLRPRVPLLARR 124
>BF003438 weakly similar to GP|22136796|gb| unknown protein {Arabidopsis
thaliana}, partial (71%)
Length = 710
Score = 25.8 bits (55), Expect = 8.6
Identities = 17/55 (30%), Positives = 23/55 (40%)
Frame = -1
Query: 92 GVPAPRPPRHLQRLPPRVADLRRR*NPTLRRNPSVDLKSLLNGNKSSEYCGPLTS 146
G+P P+P PPR + R P NP LL+ N S + P +S
Sbjct: 242 GIPGPKPT------PPRRPMPKPRPQPAPIPNPGPTFPKLLDFNTGSFHSKPFSS 96
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.328 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,454
Number of Sequences: 36976
Number of extensions: 100986
Number of successful extensions: 855
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of query: 168
length of database: 9,014,727
effective HSP length: 89
effective length of query: 79
effective length of database: 5,723,863
effective search space: 452185177
effective search space used: 452185177
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0150.5