BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0145.4
(72 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77128 similar to GP|13877779|gb|AAK43967.1 putative AP2 domain... 91 8e-20
TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-con... 52 6e-08
BF520658 PIR|H96667|H96 AP2-containing DNA-binding protein 5168... 30 0.23
TC78563 weakly similar to GP|20259502|gb|AAM13871.1 putative ATP... 28 0.67
TC78386 similar to SP|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprote... 27 1.5
TC87487 similar to SP|P52780|SYQ_LUPLU Glutaminyl-tRNA synthetas... 27 1.5
TC82788 27 1.5
TC78385 weakly similar to PIR|T21861|T21861 hypothetical protein... 27 1.5
TC91693 weakly similar to GP|10177671|dbj|BAB11031. gene_id:MGI1... 26 3.3
TC85973 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein ... 25 4.3
TC85972 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein ... 25 4.3
BG581770 similar to GP|7290497|gb CG11427-PA {Drosophila melanog... 25 5.7
BQ159113 PIR|S37754|S37 ygiF protein - Escherichia coli, partial... 24 9.7
TC88942 similar to GP|16649083|gb|AAL24393.1 Unknown protein {Ar... 24 9.7
>TC77128 similar to GP|13877779|gb|AAK43967.1 putative AP2 domain-containing
protein {Arabidopsis thaliana}, partial (44%)
Length = 1829
Score = 90.9 bits (224), Expect = 8e-20
Identities = 47/67 (70%), Positives = 55/67 (81%)
Frame = +3
Query: 1 PNLRRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATA 60
PNL+ HQGS +GG+FGE+KPL SSVDAKLQAICEGLAEMQKQGK EK + P K+KA +
Sbjct: 1092 PNLK-HQGSIIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKAEKPKKMPASKAKA-S 1265
Query: 61 SKVAPQE 67
SKV +E
Sbjct: 1266 SKVVSKE 1286
>TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-containing
protein {Atriplex hortensis}, partial (41%)
Length = 2500
Score = 51.6 bits (122), Expect = 6e-08
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Frame = +2
Query: 1 PNLRRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGL--------AEMQKQGKTEKKSEKP 52
PN++ Q GG FGE+K LHSS+DAKL AICE L + +KQGK KKS K
Sbjct: 1724 PNMKDQQQ---GGMFGEFKVLHSSIDAKLDAICESLGNNNSSDNVKNKKQGKGSKKSLKK 1894
Query: 53 QKKSK 57
+ +++
Sbjct: 1895 EVEAQ 1909
>BF520658 PIR|H96667|H96 AP2-containing DNA-binding protein 51686-52693
[imported] - Arabidopsis thaliana, partial (5%)
Length = 538
Score = 29.6 bits (65), Expect = 0.23
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 21 LHSSVDAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKAT 59
L +SVDAK+QAIC+ + K+ K +K + K KK+ +
Sbjct: 16 LKNSVDAKIQAICQKV----KREKAKKIAAKKMKKNSGS 120
>TC78563 weakly similar to GP|20259502|gb|AAM13871.1 putative ATP-dependent
RNA helicase {Arabidopsis thaliana}, partial (30%)
Length = 1920
Score = 28.1 bits (61), Expect = 0.67
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Frame = +1
Query: 32 ICEGLAEM---------QKQGKTEKKSEKPQKKSKATASKVAPQEG 68
ICEG+ +QGK E K + P+KK+ + K P +G
Sbjct: 166 ICEGMCFSLPSLDDPFNDRQGKPEFKKKDPKKKTSSQKEKTTPVKG 303
>TC78386 similar to SP|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein
precursor [Contains: Dentin phosphoprotein (Dentin
phosphophoryn) (DPP);, partial (2%)
Length = 726
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/59 (28%), Positives = 26/59 (43%)
Frame = +3
Query: 4 RRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATASK 62
R+H S DF Y S ++ ++ E + K KKS+KP+K + SK
Sbjct: 210 RKHHRYSSDSDF--YSSSSLSDSSRSESSSNSEHETSHRSKKHKKSDKPKKNKEKERSK 380
>TC87487 similar to SP|P52780|SYQ_LUPLU Glutaminyl-tRNA synthetase (EC
6.1.1.18) (Glutamine--tRNA ligase) (GLNRS). [Yellow
lupine], partial (97%)
Length = 2844
Score = 26.9 bits (58), Expect = 1.5
Identities = 14/53 (26%), Positives = 23/53 (42%)
Frame = +1
Query: 15 FGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATASKVAPQE 67
+ + K + DAKL + E + ++KK EKP K A P++
Sbjct: 583 WADAKAVKQLADAKLYELLGDKTEADNEKPSKKKKEKPAKVEDKAAPIATPEK 741
>TC82788
Length = 643
Score = 26.9 bits (58), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 38 EMQKQGKTEKKSEKPQKKSKATASKVAPQE 67
E+QKQ K +K P+K K+ A+K P E
Sbjct: 336 ELQKQKKQKKVQTLPKKMKKSHANKGYPDE 247
>TC78385 weakly similar to PIR|T21861|T21861 hypothetical protein F36F2.3 -
Caenorhabditis elegans, partial (1%)
Length = 1417
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/59 (28%), Positives = 26/59 (43%)
Frame = +3
Query: 4 RRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATASK 62
R+H S DF Y S ++ ++ E + K KKS+KP+K + SK
Sbjct: 201 RKHHRYSSDSDF--YSSSSLSDSSRSESSSNSEHETSHRSKKHKKSDKPKKNKEKERSK 371
>TC91693 weakly similar to GP|10177671|dbj|BAB11031. gene_id:MGI19.3~unknown
protein {Arabidopsis thaliana}, partial (16%)
Length = 841
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/41 (31%), Positives = 24/41 (57%)
Frame = +2
Query: 27 AKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATASKVAPQE 67
A + A+C+ + + ++G+ E KSEKP+K + S + E
Sbjct: 269 AMVCALCD-MHRLIQEGEKEVKSEKPRKSRRDEISSIKQAE 388
>TC85973 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein L24.
[Chickpea Garbanzo] {Cicer arietinum}, partial (98%)
Length = 725
Score = 25.4 bits (54), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +2
Query: 26 DAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATAS 61
DA +A + E K+ K EKK++K + SKA S
Sbjct: 371 DAAREAALREIKERIKKTKDEKKAKKAEVASKAQKS 478
>TC85972 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein L24.
[Chickpea Garbanzo] {Cicer arietinum}, partial (98%)
Length = 764
Score = 25.4 bits (54), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +1
Query: 26 DAKLQAICEGLAEMQKQGKTEKKSEKPQKKSKATAS 61
DA +A + E K+ K EKK++K + SKA S
Sbjct: 385 DAAREAALREIKERIKKTKDEKKAKKAEVASKAQKS 492
>BG581770 similar to GP|7290497|gb CG11427-PA {Drosophila melanogaster},
partial (19%)
Length = 769
Score = 25.0 bits (53), Expect = 5.7
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 9/46 (19%)
Frame = -1
Query: 2 NLRRHQGSSVGGDFGEYKPLHSSVDAKLQ---------AICEGLAE 38
NLRR G+ + G F Y P++ +DA+ AICE +++
Sbjct: 286 NLRRTSGA-IFGTFSLYSPINHKIDARAAGTAMKSRSFAICEMISK 152
>BQ159113 PIR|S37754|S37 ygiF protein - Escherichia coli, partial (10%)
Length = 212
Score = 24.3 bits (51), Expect = 9.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 4 RRHQGSSVGGDFGEYKP 20
R H G +GG F +++P
Sbjct: 148 RLHAGGEIGGQFSQFRP 98
>TC88942 similar to GP|16649083|gb|AAL24393.1 Unknown protein {Arabidopsis
thaliana}, partial (43%)
Length = 1879
Score = 24.3 bits (51), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 6 HQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQK 41
++G SV + P+HS+V+AKL+ + LA K
Sbjct: 126 NRGPSVNDRWVFDSPVHSNVEAKLRQLLIELANNDK 233
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,858,262
Number of Sequences: 36976
Number of extensions: 14898
Number of successful extensions: 103
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of query: 72
length of database: 9,014,727
effective HSP length: 48
effective length of query: 24
effective length of database: 7,239,879
effective search space: 173757096
effective search space used: 173757096
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0145.4