TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0144.9
         (269 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG451687 weakly similar to PIR|D96594|D96 unknown protein  71207...    35  0.030
TC93733 similar to GP|10998143|dbj|BAB03114. kinesin (centromere...    30  1.3
BF005621                                                               29  1.7
TC93344 weakly similar to GP|19310663|gb|AAL85062.1 unknown prot...    29  2.2
AW585116                                                               28  3.7
BG455488 similar to GP|16604643|gb unknown protein {Arabidopsis ...    28  4.8
TC77629 similar to GP|6648962|gb|AAF21309.1| seed maturation pro...    27  6.3

>BG451687 weakly similar to PIR|D96594|D96 unknown protein  71207-66119
           [imported] - Arabidopsis thaliana, partial (17%)
          Length = 641

 Score = 35.0 bits (79), Expect = 0.030
 Identities = 27/124 (21%), Positives = 60/124 (47%), Gaps = 3/124 (2%)
 Frame = +1

Query: 119 DSQQAAALANLQSFLVDASATFHQVKDVGQAVSFKEAKVSAGKAQVAAMKEDFKKFTARK 178
           + + AAA A L+           +  ++ +A+  KEA+     +++  + + ++    + 
Sbjct: 154 EQRLAAAEAELEELRAQFDENERKNLEMTEAIKVKEAEAKTYISEIETIGQAYEDMQTQH 333

Query: 179 VLIADEISEVDIKLEELHREITKLEKKRADLVEEGPAVKDQL---DVLTKDSKALIISTK 235
             +  +++E D    +L  E  K ++  + L+ E  A+ DQL   + L ++SK  I +++
Sbjct: 334 QHLLQQVAERDDYNIKLVSESVKAKQLHSTLLSEKQALADQLQQINSLIENSKMKIANSE 513

Query: 236 EVIK 239
           E IK
Sbjct: 514 EQIK 525


>TC93733 similar to GP|10998143|dbj|BAB03114. kinesin (centromere protein)
           like heavy chain-like protein {Arabidopsis thaliana},
           partial (13%)
          Length = 747

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 22/72 (30%), Positives = 34/72 (46%)
 Frame = +1

Query: 182 ADEISEVDIKLEELHREITKLEKKRADLVEEGPAVKDQLDVLTKDSKALIISTKEVIKEL 241
           A EI E+  K+EEL     +LE +   L EE    K        + KAL   ++EV K +
Sbjct: 16  ASEIEELKQKVEELTASKDQLEVRNQKLAEESSYAKGLASAAAVELKAL---SEEVAKLM 186

Query: 242 EIDQAVKKDLDA 253
             ++ +  +L A
Sbjct: 187 NHNERLSAELAA 222


>BF005621 
          Length = 464

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 189 DIKLEELHREITKLE-KKRADLVEEGPAVKDQLDVLTKDSKALIISTKEVIKELE 242
           +  LE L R   + E KKR ++ E+G  VK+  + L K+ K   +  ++   ELE
Sbjct: 283 EFHLERLSRVYAESEFKKREEICEKGKKVKESYEALLKEVKVNRLVDRKTNVELE 447


>TC93344 weakly similar to GP|19310663|gb|AAL85062.1 unknown protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 420

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 53  SPPRQADATAETAQSSGVANSQQIEESMGRLKAIVFASGFLDQIQADPQA 102
           +PP +A A    ++   V++  Q+E+++ +++  V  SGFLD  Q   +A
Sbjct: 202 TPPNEARAAVNISKDQIVSSLTQVEQTIDQVQ--VVGSGFLDSAQRVAEA 345


>AW585116 
          Length = 443

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 19/26 (72%)
 Frame = +2

Query: 101 QANHAAKELLVFLLGQKLDSQQAAAL 126
           ++NH    LL+ LLG++L+S  AA+L
Sbjct: 104 RSNHTIGNLLILLLGRRLNSVSAASL 181


>BG455488 similar to GP|16604643|gb unknown protein {Arabidopsis thaliana},
          partial (31%)
          Length = 641

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 1  MPPPKSTATVQPSPQTKGGSSSHVSSEKLDTLFEE 35
          M PPK T  +  S  +   SSS  SS   D L  E
Sbjct: 19 MGPPKQTPNISSSSPSSSSSSSSSSSSSQDILIRE 123


>TC77629 similar to GP|6648962|gb|AAF21309.1| seed maturation protein PM23
           {Glycine max}, partial (76%)
          Length = 1741

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 56/236 (23%), Positives = 95/236 (39%), Gaps = 15/236 (6%)
 Frame = +3

Query: 3   PPKSTATVQPSPQTKGGSSSHVSSE------KLDTLFEE-DPLAALDDFLDGTLEWDSPP 55
           P +S  T  PSP     SSSH S++       L  L +E +PL          ++ D PP
Sbjct: 186 PLRSNPTKSPSPFLVLASSSHDSNDFTSKKSALSELIQEIEPLDV------SNIQKDVPP 347

Query: 56  RQADATAETAQSS-GVANSQQ---IEESMGRLKAIVFASGFLDQIQADPQANHAAKELLV 111
             ADA   T     G+  S Q   + E++    + +  S  +              E  +
Sbjct: 348 TTADAMKRTISGMLGLLPSDQFNVVVEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKTL 527

Query: 112 FLLGQKLDSQQAAALA-NLQSFLVDASATFHQVKDVGQAVSFKEAKVSAGKAQVAAMKED 170
            +  + L+  +A +   +LQ FL D+      V D G+  +   +KV      V    +D
Sbjct: 528 DICDRDLEKPKAESTKFDLQDFLRDSV----NVIDFGRNNNL-SSKVEKPHEDVNI--QD 686

Query: 171 FKKFTARKVLIADEISEVDIKLEELHREITKLEKKRADLVEE---GPAVKDQLDVL 223
             + +A      + IS +  +L  + +E+ ++++K A L  +   G    D LD L
Sbjct: 687 LGQISAE---AQEYISSLQSRLSSIKKELREVKRKSAALQMQQFVGEEKNDLLDYL 845


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.311    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,536,318
Number of Sequences: 36976
Number of extensions: 55935
Number of successful extensions: 272
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of query: 269
length of database: 9,014,727
effective HSP length: 95
effective length of query: 174
effective length of database: 5,502,007
effective search space: 957349218
effective search space used: 957349218
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)