TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0142.9
         (341 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (...    68  4e-12
TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18...    37  0.011
AJ500568 similar to GP|21553771|gb unknown {Arabidopsis thaliana...    27  8.7

>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
           cultivar-group)}, partial (13%)
          Length = 769

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 32/62 (51%), Positives = 40/62 (63%)
 Frame = +2

Query: 1   RKYLDRDHAAANQRLINDYFANEPTYDDAMFRRRYRMQKHLFLRIVDDLSSSDNYFTQRV 60
           R+ ++R+     +RL NDYF+  P Y D  FRRRYRM KH+FLRIV+ L   D YF   V
Sbjct: 479 RRNIERNREEGYKRLFNDYFSEAPVYMDE*FRRRYRMHKHVFLRIVEALGQHDEYFQLTV 658

Query: 61  DA 62
           DA
Sbjct: 659 DA 664


>TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
           {Arabidopsis thaliana}, partial (23%)
          Length = 773

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 28/106 (26%), Positives = 45/106 (42%)
 Frame = +2

Query: 22  NEPTYDDAMFRRRYRMQKHLFLRIVDDLSSSDNYFTQRVDAANK*GISPLAKCTTAIRML 81
           N   + D  FRR +RM K  F  I ++L SS      + +   +  I    +    I  L
Sbjct: 431 NREDFPDDEFRRCFRMSKQTFNMICNELDSS----VTKKNTTLRDAIPVRQRVAVCIYRL 598

Query: 82  AYGVAAHAVDEYIKIGGTTSLECLRRFCKGIIRLYEQQYLRAPTQE 127
           A G     V +   +G +T  + +   C  I  +  Q++LR P +E
Sbjct: 599 ATGEPLRLVSKKFGLGISTCHKLVLEVCAAIKSVLMQKFLRWPDEE 736


>AJ500568 similar to GP|21553771|gb unknown {Arabidopsis thaliana}, partial
           (43%)
          Length = 658

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
 Frame = +1

Query: 280 NVGPILSNLGKVDLV---HSNHTRPRCYPLLQIMCVLDPSCVIQ 320
           NV  + SNL K D +   H N      +PLLQ+  + +P+ V Q
Sbjct: 391 NVIYVASNLLKTDKIRGMHQNKITNSFHPLLQLQILTEPNIVTQ 522


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.340    0.148    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,964,052
Number of Sequences: 36976
Number of extensions: 159440
Number of successful extensions: 1107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of query: 341
length of database: 9,014,727
effective HSP length: 97
effective length of query: 244
effective length of database: 5,428,055
effective search space: 1324445420
effective search space used: 1324445420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 59 (27.3 bits)