BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.9
(1610 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 194 2e-67
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 211 2e-54
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 173 6e-43
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 173 6e-43
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 166 9e-41
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 159 8e-39
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 137 3e-32
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 77 5e-30
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 115 2e-25
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 96 9e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 95 2e-19
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 72 2e-12
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 72 2e-12
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 71 4e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 69 1e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 64 4e-10
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 60 5e-09
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 60 9e-09
BG453335 weakly similar to GP|18071369|g putative gag-pol polypr... 55 2e-07
BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440... 52 1e-06
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 194 bits (492), Expect(2) = 2e-67
Identities = 91/141 (64%), Positives = 116/141 (81%)
Frame = -2
Query: 1163 VVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1222
+ RNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+LI+F+ L+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1223 YISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1282
+ EEV+V QPPGFED + P+HVF+L K+LYGLKQAPRAWYERLS FLL+N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1283 TLFCKTYKDDILIVQIYVDDI 1303
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 2e-67
Identities = 37/64 (57%), Positives = 49/64 (75%)
Frame = -3
Query: 1094 LLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVF 1153
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +PE VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 1154 RNKL 1157
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 211 bits (537), Expect = 2e-54
Identities = 103/217 (47%), Positives = 146/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 1338 IQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGM 1397
++V Q EG YI Q KY +LL++F M +S +++ P+ P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1398 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYK 1457
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+LRYL GT NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1458 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQM 1517
L Y D+DYAGD +RKSTSG L S VSW+SK+Q + LST +AE+I+AA C+ Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1518 LWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILH 1553
+WM+ LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 173 bits (438), Expect = 6e-43
Identities = 96/218 (44%), Positives = 129/218 (59%), Gaps = 3/218 (1%)
Frame = +1
Query: 1097 LKGLVSLIEPKSID---EALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVF 1153
LK V L EP D L D W+ AM+ E N W LV P + IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 1154 RNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQM 1213
R K N G V + KARLVA+G+SQ G DYTETF+PV + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 1214 DVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN 1273
D+ +AFLNG++ EEVY+ QP GFE K V KL KSLYGLKQAPRAWYE L+S ++
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 1274 EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQS 1311
F + + D +L + + IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 173 bits (438), Expect = 6e-43
Identities = 91/251 (36%), Positives = 149/251 (59%), Gaps = 6/251 (2%)
Frame = +3
Query: 1105 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVV 1164
+P + +EA++ + W +M E+ +N+ W L IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1165 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSV---NHNIVLHQMDVKSAFLN 1221
+ KARLVA+GYSQQ G+DYTE FAPVAR + IR++I+ + + + M + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 1222 GYISEEVYVHQPPGFEDEKKPDHVF--KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGK 1279
+ + + ++ V ++K++LYGLKQAPRAWY R+ ++ + F +
Sbjct: 399 N*MRKFLLINH------RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCP 560
Query: 1280 VDTTLFCKTYK-DDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGI 1338
+ TLF K + ILI+ +YVDD+IF ++++ +EF + M+ EF MS +G++ YFLG+
Sbjct: 561 YEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGV 740
Query: 1339 QVDQTPEGTYI 1349
+V Q +G YI
Sbjct: 741 EVTQNEKGIYI 773
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 166 bits (419), Expect = 9e-41
Identities = 81/183 (44%), Positives = 118/183 (64%)
Frame = -1
Query: 1106 PKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVR 1165
P+S +EA++DK+W ++ E KND W + P+ + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1166 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYIS 1225
K RLVA+G++ G DY ETFAPVA+L IR+++S +VN L QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1226 EEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLF 1285
+EVY++ PPG E K +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1286 CKT 1288
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 159 bits (402), Expect = 8e-39
Identities = 90/241 (37%), Positives = 133/241 (54%)
Frame = +2
Query: 1245 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1304
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1305 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNM 1364
+ S + + F++ +G L+YFLG++V ++ +G ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1365 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 1424
L TP + L D + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1425 PRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLG 1484
P++ H A R+L+YLK GL Y T KLS + D+D+A T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 1485 S 1485
S
Sbjct: 740 S 742
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 137 bits (346), Expect = 3e-32
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Frame = +2
Query: 1464 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQ 1523
+D+AGD RKSTSG LG+ +SW+SK+Q +A STAEAEYI++ C+TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1524 LEDYQILESNIP--IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVD 1581
LE E N P IYCDN +AI+LSKNP+ H R+KHI++++H IR+ + + +++++
Sbjct: 182 LEVMHH-EQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCP 358
Query: 1582 TDHQWADIFTKPLAEDRFNFILKNLNM 1608
T+ + ADIFTKPL + F + K L M
Sbjct: 359 TEEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 76.6 bits (187), Expect(2) = 5e-30
Identities = 39/87 (44%), Positives = 58/87 (65%)
Frame = +1
Query: 1433 VKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWAS 1492
VKRI+RY+KGT+ + + + + E + GY D+D+AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1493 KRQSTIALSTAEAEYISAAICSTQMLW 1519
K Q+ +ALST EAEY++A + + L+
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
Score = 74.7 bits (182), Expect(2) = 5e-30
Identities = 29/84 (34%), Positives = 55/84 (64%)
Frame = +3
Query: 1516 QMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 1575
+ +WM+ +E+ + I +YCD+ +A+ +++NP HSR KHI ++YHF+R+ V++G +
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSV 428
Query: 1576 LLKFVDTDHQWADIFTKPLAEDRF 1599
++ + T+ AD TK + D+F
Sbjct: 429 DMQKIHTNDNLADAMTKSINTDKF 500
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 115 bits (287), Expect = 2e-25
Identities = 58/163 (35%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Frame = +1
Query: 1432 AVKRILRYLKGTTNLGLMYKKT*EYK--LSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 1489
A+K +L+YL + L Y K + + L GY DADYAG+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1490 WASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 1549
W + +QS + LST +AEYI+ +W+K + + I + + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1550 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTK 1592
+ H R KHI+++ HFIRD ++ ++++ + ++ AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 96.3 bits (238), Expect = 9e-20
Identities = 49/116 (42%), Positives = 73/116 (62%)
Frame = +2
Query: 1108 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVRNK 1167
S+D + +D I ++ L LVKKP V IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 1168 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGY 1223
ARLVA+GY +Q+GID+ E FAPV R+E I LL++ + + +H +DVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 95.1 bits (235), Expect = 2e-19
Identities = 50/122 (40%), Positives = 74/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 1408 RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY---KKT*EYKLSGYCDA 1464
RPDI +SV + ++F DPR+ HL A RILRY++GT GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1465 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQL 1524
D+ GD R+STSG +SW +K+Q ALS+ EAEYI+ + Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1525 ED 1526
++
Sbjct: 472 KE 477
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 72.0 bits (175), Expect = 2e-12
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Frame = +1
Query: 1257 QAPRAWYERLSSFLLENEFVRGKVDTTLFCK---TYKDDILIVQIYVDDIIFGSANQSLC 1313
Q+PR W++R + + + +++ + D +F K T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1314 KEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP 1373
K ++ EFE+ +G LKYFLG++V + +G+ I Q KY +LLK+ M+ + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1374 MHPTC 1378
C
Sbjct: 355 YGCNC 369
Score = 36.2 bits (82), Expect = 0.11
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 1365 LESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARF 1421
L+ ++TPM T L D V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/104 (37%), Positives = 58/104 (55%)
Frame = -3
Query: 1402 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGY 1461
+ LT P+I FS++L +R+ S P H +K I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1462 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 1505
+A Y D + +S +G G+ ++SW S + STIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 70.9 bits (172), Expect = 4e-12
Identities = 44/149 (29%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Frame = +1
Query: 8 YNAKP-PMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQ 66
Y A P P+FDG+ + W R+E++ DLW+ + + YE +D + + + E+
Sbjct: 160 YKAPPLPVFDGENYHIWAARIEAYLEA--NDLWEAVEEDYEVLPLSDNPTMAQIKNHKER 333
Query: 67 KKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQK 126
K ++ KARA L +A+S E + +I + A I++ LK +EG+++++ +AL+LI++
Sbjct: 334 K---TRKSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNLIRE 504
Query: 127 YESFIMEPNESIEEMFSRFQLLVAGIRPL 155
+E M+ +E+I+E ++ + +R L
Sbjct: 505 FEMQKMKESETIKEYANKLISIANKVRLL 591
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.3 bits (168), Expect = 1e-11
Identities = 36/74 (48%), Positives = 47/74 (62%)
Frame = -2
Query: 1187 FAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVF 1246
F P+ +L I L+S N+ L +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*E-VGKMVG 378
Query: 1247 KLKKSLYGLKQAPR 1260
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 64.3 bits (155), Expect = 4e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +2
Query: 1538 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAED 1597
CD +A L+ NP+ HSR KHI + HF+RD VQ+G L ++ V T Q AD TKPL++
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1598 RFNFILKNLNM 1608
R + + +
Sbjct: 209 RHQLLRNKIGV 241
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 60.5 bits (145), Expect = 5e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = -1
Query: 1224 ISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
+ E++Y+ QP GF K DHV KL+KSLYGLKQ+PR WY+R S+
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 59.7 bits (143), Expect = 9e-09
Identities = 48/186 (25%), Positives = 88/186 (46%)
Frame = +2
Query: 1030 VSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRP 1089
+ + K+ EV+ E + EE G L+K + +H L +K + +
Sbjct: 53 IQEDFKSHGEVQEESNYIEEIKGFQEPTQLRKIKE*ESHLVTLNSSSKSYHIFHYVGYSF 232
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
S + SL + S IEPK+ +A Q ++W+ AME+E+ +N+ +L E +
Sbjct: 233 SAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEENNTSTLEPLREGKKWVDC 412
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
+ V++ G++ + KA+LVA+ + Q EG D+ + + + R L++ +
Sbjct: 413 RPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNKDDNCRCLLTIAAAKG*Q 589
Query: 1210 LHQMDV 1215
LH MDV
Sbjct: 590 LHLMDV 607
>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (11%)
Length = 660
Score = 55.5 bits (132), Expect = 2e-07
Identities = 36/140 (25%), Positives = 75/140 (52%)
Frame = +1
Query: 67 KKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQK 126
K+L + K ++ ++ +++I+ +K + L+ HEG+ KV++ K SL +K
Sbjct: 112 KELKKKDCKELFLIQ*SLDEGNFKRISKSTRSKEASNILEKYHEGDDKVEQIKLQSLRRK 291
Query: 127 YESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELT 186
++ ME + I + S+ +V I+ + T + V +++R L + +V +I +
Sbjct: 292 FKLMQMEDEKKIADYISKLINVVNQIKAYGEVVTDQQIVEKIMRTLSPRFDFIVVAIHES 471
Query: 187 RDVENMSLEELISILKCHEL 206
+DV+ + +EEL S L+ H+L
Sbjct: 472 KDVKTLKIEELKSSLEAHKL 531
>BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440.1 [imported]
- Arabidopsis thaliana, partial (20%)
Length = 731
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +3
Query: 1516 QMLWMKHQLED--YQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKG 1573
Q +W++ L + ++ E + I DN + I+L++NP+ H R HI +YHFIR+ V+ G
Sbjct: 135 QAMWLQDLLSEVTWEPCEE-VVIRIDNQSVIALTRNPVFHGRGNHIHKRYHFIRECVENG 311
Query: 1574 VLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+ ++ V + A I TK L F I + M
Sbjct: 312 QVEVEHVPGEKHRAYI*TKALGRIIFREIRYYIGM 416
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.335 0.145 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,450,518
Number of Sequences: 36976
Number of extensions: 682409
Number of successful extensions: 5802
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 3284
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 2248
Number of HSP's gapped (non-prelim): 3878
length of query: 1610
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1501
effective length of database: 4,984,343
effective search space: 7481498843
effective search space used: 7481498843
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0134.9