BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.20
(1583 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 176 4e-62
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 206 4e-53
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 157 2e-38
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 157 4e-38
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 155 9e-38
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 150 5e-36
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 135 1e-31
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 132 1e-30
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 75 9e-28
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 114 4e-25
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 112 1e-24
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 108 2e-23
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 94 4e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 91 5e-18
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 60 4e-13
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 72 1e-12
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 70 5e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 65 2e-10
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 62 2e-09
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 58 3e-08
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 176 bits (445), Expect(2) = 4e-62
Identities = 86/141 (60%), Positives = 110/141 (77%)
Frame = -2
Query: 1134 VVRNKARLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNG 1193
+ RNK++LV QG +Q+EGIDY E F+ VAR+EAIR+LI+F+ ++QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1194 YISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDT 1253
+ EEV+V QPPGFED + P+HVF+L K+LYGLKQAPRAWY RLS FLL N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1254 TLFCKTYKDDI*IKQIYVDDI 1274
TLF + ++ I Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 4e-62
Identities = 35/64 (54%), Positives = 50/64 (77%)
Frame = -3
Query: 1065 LLSLKGLVSLIEPKSIDEALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVF 1124
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +P+G ++GT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 1125 RNKL 1128
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 206 bits (525), Expect = 4e-53
Identities = 100/217 (46%), Positives = 144/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 1309 IQVDQKPEATYIHQSKYTKELLKKFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGM 1368
++V Q E YI Q KY +LL++F M+KS +++ P+ P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1369 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYK 1428
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+ RYL GT NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1429 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQM 1488
L Y D+DYAGD +RKSTSG L S VSW+SK+Q ++ LS +AE+I+AA C+ Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1489 LWTKHQLEDYQILES-NIPIYCDNTAAISLSKNPILH 1524
+W + LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 157 bits (398), Expect = 2e-38
Identities = 79/183 (43%), Positives = 116/183 (63%)
Frame = -1
Query: 1077 PKSIDEALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVR 1136
P+S +EA++DK+W ++ E KND W + P+G + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1137 NKARLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYIS 1196
K RLVA+G + G DY ETFA VA+L IR+++S +VN + QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1197 EEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLF 1256
+EVY++ PPG E +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1257 CKT 1259
T
Sbjct: 18 TLT 10
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 157 bits (396), Expect = 4e-38
Identities = 92/218 (42%), Positives = 122/218 (55%), Gaps = 3/218 (1%)
Frame = +1
Query: 1068 LKGLVSLIEPKSID---EALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVF 1124
LK V L EP D L D W+ M+ E N W+LV P +G KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 1125 RNKLNEKGDVVRNKARLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQM 1184
R K N G V + KARLVA+G SQ G DYTETF+ V + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 1185 DVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN 1244
D+ +AFLNG++ EEVY+ QP GFE N V KL KSLYGLKQAPRAWY L+S +
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 1245 EFVRGKVDTTLFCKTYKDDI*IKQIYVDDIIFGSANPS 1282
F + + D +L IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 155 bits (393), Expect = 9e-38
Identities = 85/249 (34%), Positives = 142/249 (56%), Gaps = 4/249 (1%)
Frame = +3
Query: 1076 EPKSIDEALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVV 1135
+P + +EA++ + W +M E+ +N+ W L G +G KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1136 RNKARLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSV---NHNIIVHQMDVKSAFLN 1192
+ KARLVA+G SQQ G+DYTE FA VAR + IR++I+ + + + M + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 1193 GYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVD 1252
+ + + ++ + ++K++LYGLKQAPRAWY R+ ++ F + +
Sbjct: 399 N*MRKFLLINHRVM*RRVIS----*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYE 566
Query: 1253 TTLFCKTYK-DDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQV 1311
TLF K + I I +YVDD+IF + ++ +EF + M+ E MS +G++ YFLG++V
Sbjct: 567 HTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEV 746
Query: 1312 DQKPEATYI 1320
Q + YI
Sbjct: 747 TQNEKGIYI 773
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 150 bits (378), Expect = 5e-36
Identities = 87/241 (36%), Positives = 128/241 (53%)
Frame = +2
Query: 1216 VFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTYKDDI*IKQIYVDDII 1275
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF K +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1276 FGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKELLKKFNM 1335
+ S + + ++ +G L+YFLG++V + + ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1336 KKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRPDILFSVHLCARFQSD 1395
TP + L D + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1396 PRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLG 1455
P++ H A R+ +YLK GL Y TS KLS + D+D+A T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 1456 S 1456
S
Sbjct: 740 S 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 135 bits (340), Expect = 1e-31
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 2/217 (0%)
Frame = +1
Query: 757 LELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTWVKFLSRKDESHSVFSTFIAQVQNEK 816
L+ +H DL+G K S GG+RY M I+DD+ WV FL K+E+ F + V+ +
Sbjct: 97 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276
Query: 817 GCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTHQQNGVIERKNRTLQEMARTML 876
G + ++ +D+ EF + F ++GIA + PR QQNGV ER RTL E AR ML
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456
Query: 877 QETDM--AKHFWAEAVNTTCYIQNRISIRPILNKTPYELWKKIKPNFSYFHPFGCVCYAL 934
+ + W EA +T C++ NR + K P ++W ++S FGC YAL
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636
Query: 935 NNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYNTDAKT 971
N +L ++ +C+ L Y+ SKG+R++ +D K+
Sbjct: 637 VNDGKL---APRAGECIFLSYASESKGYRLWCSDPKS 738
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 132 bits (332), Expect = 1e-30
Identities = 66/147 (44%), Positives = 100/147 (67%), Gaps = 2/147 (1%)
Frame = +2
Query: 1435 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQ 1494
+D+AGD RKSTSG LG+ +SW+SK+Q ++A S AEAEYI++ C+TQ +W +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1495 LEDYQILESNIP--IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVD 1552
LE E N P IYCDN +AI+LSKNP+ H R+KHI++++H IR+ + + +++++
Sbjct: 182 LEVMHH-EQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCP 358
Query: 1553 TDHQWANIFTKPLADDRFNFILKNLNM 1579
T+ + A+IFTKPL + F + K L M
Sbjct: 359 TEEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 75.5 bits (184), Expect(2) = 9e-28
Identities = 39/87 (44%), Positives = 57/87 (64%)
Frame = +1
Query: 1404 VKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWAS 1463
VKRI RY+KGT+ + + + SE + GY D+D+AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1464 KRQSIIALSLAEAEYISAAICSTQMLW 1490
K Q+++ALS EAEY++A + + L+
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
Score = 68.2 bits (165), Expect(2) = 9e-28
Identities = 27/84 (32%), Positives = 53/84 (62%)
Frame = +3
Query: 1487 QMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVL 1546
+ +W + +E+ + I +YCD+ +A+ +++NP HSR KHI ++YHF+R+ V +G +
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSV 428
Query: 1547 LLKFVDTDHQWANIFTKPLADDRF 1570
++ + T+ A+ TK + D+F
Sbjct: 429 DMQKIHTNDNLADAMTKSINTDKF 500
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 114 bits (284), Expect = 4e-25
Identities = 56/113 (49%), Positives = 68/113 (59%)
Frame = +1
Query: 854 THQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTPYEL 913
T QQNGV ER NRTL E R ML+ MAK FWAEAV T CY+ NR I KTP E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 914 WKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYN 966
WK ++S H FGC Y + N K D KS KC+ LGY+D KG+ +++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 112 bits (280), Expect = 1e-24
Identities = 73/206 (35%), Positives = 112/206 (53%)
Frame = -3
Query: 695 SVNEEQWVWHRRLGHASMSKLDLVRGLPTLKFSSDALCEACQKGKFTKVPFKAKNVVSTS 754
S+N++ +WH RLGH L+L+ LP + F + CEAC GK K F + V +
Sbjct: 602 SLNKDA-LWHARLGHPHGRALNLM--LPGVVFENKN-CEACILGKHCKNVFPRTSTVYEN 435
Query: 755 RPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTWVKFLSRKDESHSVFSTFIAQVQN 814
+L++ DL+ + S +Y + +D+ S +TW+ + KD F F A V N
Sbjct: 434 C-FDLIYTDLW-TAPSLSRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTN 261
Query: 815 EKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTHQQNGVIERKNRTLQEMART 874
+I +RSD+GGE+ + F+S D +GI H SCP T QQNGV +RKN+ L E+AR+
Sbjct: 260 HYHAKIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARS 81
Query: 875 MLQETDMAKHFWAEAVNTTCYIQNRI 900
++ + + V+T CY+ N I
Sbjct: 80 LMFQAN---------VSTACYLINWI 30
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 108 bits (269), Expect = 2e-23
Identities = 55/163 (33%), Positives = 94/163 (56%), Gaps = 2/163 (1%)
Frame = +1
Query: 1403 AVKRIRRYLKGTTNLGLMYKKTSEYK--LSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 1460
A+K + +YL + L Y K ++ + L GY DADYAG+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1461 WASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKN 1520
W + +QS++ LS +AEYI+ +W K + + I + + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1521 PILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTK 1563
+ H R KHI+++ HFIRD + ++++ + ++ A++FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 94.0 bits (232), Expect = 4e-19
Identities = 50/115 (43%), Positives = 69/115 (59%), Gaps = 3/115 (2%)
Frame = +1
Query: 1379 RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMY---KKTSEYKLSGYCDA 1435
RPDI +SV + ++F DPR+ HL A RI RY++GT GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1436 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLW 1490
D+ GD R+STSG +SW +K+Q I ALS EAEYI+ + Q LW
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALW 456
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 90.5 bits (223), Expect = 5e-18
Identities = 47/116 (40%), Positives = 72/116 (61%)
Frame = +2
Query: 1079 SIDEALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNK 1138
S+D + +D I ++ L LVKKP GV +G +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 1139 ARLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGY 1194
ARLVA+G +Q+GID+ E FA V R+E I LL++ + + +H +DVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 60.1 bits (144), Expect(2) = 4e-13
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 1228 QAPRAWYGRLSSFLLDNEFVRGKVDTTLFCK---TYKDDI*IKQIYVDDIIFGSANPSLC 1284
Q+PR W+ R + + +++ + D +F K T K I I +YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILI--VYVDDIFLTGDHGK*I 174
Query: 1285 KEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKELLKKFNMKKSTIAKTP 1344
K ++ E E+ +G LKYFLG++V + + + I Q KY +LLK+ M + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1345 MHPTC 1349
C
Sbjct: 355 YGCNC 369
Score = 34.3 bits (77), Expect(2) = 4e-13
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 1341 AKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRPDILFSVHLCARF 1392
++TPM T L D V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 344 SETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 72.4 bits (176), Expect = 1e-12
Identities = 35/112 (31%), Positives = 64/112 (56%)
Frame = -2
Query: 894 CYIQNRISIRPILNKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLL 953
CY+ NRI R + ++ P+E+ + KP+ +Y FGC+CY L + +K +++S K + +
Sbjct: 701 CYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMFI 522
Query: 954 GYSDRSKGFRIYNTDAKTIEECIHVRFDDKLDSDQSKLVEKFADMSINVSDK 1005
GYS KG++ Y+ +A+ + V+F ++ + K E D++ SDK
Sbjct: 521 GYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLT---SDK 375
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 70.5 bits (171), Expect = 5e-12
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = -3
Query: 1373 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGY 1432
+ LT P+I FS++L +R+ S P H +K I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1433 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAI-----CSTQ 1487
+A Y D + +S +G G+ ++SW S + S IA S A Y+ + S
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA-YVQVIL*H*IRFSIT 175
Query: 1488 MLWTKHQLEDYQILESNIPIYCDNT 1512
T HQL + E +I CD T
Sbjct: 174 KD*TNHQL--FIEFEKHIICLCDKT 106
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 65.1 bits (157), Expect = 2e-10
Identities = 34/74 (45%), Positives = 46/74 (61%)
Frame = -2
Query: 1158 FALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVF 1217
F + +L I L+S N+ + +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVG-KMVG 378
Query: 1218 KLKKSLYGLKQAPR 1231
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 61.6 bits (148), Expect = 2e-09
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +3
Query: 572 WYLDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGVDNSPC---IDNVL 628
W +DSGC+ HMT +R +F+EL +V ++ G GT+ V + I NVL
Sbjct: 108 WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYKQISNVL 287
Query: 629 LVDGLNHNLLSISQLADKGYDIIFNQKSC 657
LN +LLS+ QL KGY ++F + C
Sbjct: 288 YAPKLNQSLLSVPQLLTKGYKVLFEHEKC 374
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 58.2 bits (139), Expect = 3e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 1509 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADD 1568
CD +A L+ NP+ HSR KHI + HF+RD V +G L ++ V T Q A+ TKPL+
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1569 RFNFILKNLNM 1579
R + + +
Sbjct: 209 RHQLLRNKIGV 241
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.351 0.155 0.541
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,272,158
Number of Sequences: 36976
Number of extensions: 704684
Number of successful extensions: 6290
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 3500
Number of HSP's gapped (non-prelim): 3253
length of query: 1583
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1474
effective length of database: 4,984,343
effective search space: 7346921582
effective search space used: 7346921582
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0134.20