TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.17
         (431 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83528                                                                89  3e-18
TC90865 homologue to GP|9049326|dbj|BAA99336.1 orf129b {Beta vul...    42  4e-04
TC77786                                                                42  5e-04
BG448304                                                               39  0.004
TC81466 similar to GP|5821143|dbj|BAA83713.1 RNA binding protein...    36  0.033
BF006363 similar to GP|23496060|gb hypothetical protein {Plasmod...    35  0.043
BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkho...    30  1.4
TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-...    28  6.8
BQ751379 similar to GP|18376126|em conserved hypothetical protei...    28  8.9
TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Ar...    28  8.9
BQ143793 weakly similar to GP|6523547|emb| hydroxyproline-rich g...    28  8.9
TC77695 similar to PIR|T09704|T09704 probable arginine/serine-ri...    28  8.9

>TC83528 
          Length = 555

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 50/122 (40%), Positives = 76/122 (61%), Gaps = 4/122 (3%)
 Frame = +3

Query: 310 PVVVMIRINS-FNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
           P+V+ ++IN+ F+V RV +N  S  DI+Y  AF ++ L +  L P  G L G  G+ + V
Sbjct: 180 PMVIKLQINNNFSVLRVFVNPMSKVDILYWSAFLKMKLQESMLKPCQGFLKGTFGKGLPV 359

Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQ---VVASYNVIIGRNTLNRLCAVISTDHLAVKY 425
           +GY+DL T FG  EN K ++VRY V++    V+ YNV++G  +L  L AV+S     +KY
Sbjct: 360 KGYIDLDTTFGKGENTKTIKVRYFVVESPPSVSIYNVVLGWPSLKDLKAVLSVAEFTIKY 539

Query: 426 PL 427
           P+
Sbjct: 540 PV 545


>TC90865 homologue to GP|9049326|dbj|BAA99336.1 orf129b {Beta vulgaris},
           partial (16%)
          Length = 940

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 23/55 (41%), Positives = 36/55 (64%), Gaps = 1/55 (1%)
 Frame = -3

Query: 321 NVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTG-TLVGFSGEQVWVRGYLDL 374
           +VR+++L+ GSS DI+Y + F  L L +K+L+ Y G  L GF+G      GY++L
Sbjct: 938 DVRKIILD*GSSCDIMYSNMF*TLQLLEKNLISYVGFDLQGFNGATTRP*GYVEL 774


>TC77786 
          Length = 1094

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 21/44 (47%), Positives = 28/44 (62%), Gaps = 1/44 (2%)
 Frame = +3

Query: 151 DKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAGR-SQLNDRGDR 193
           DK K C YHRS G+DT +CF L+  IE LI+  +  +  D+G R
Sbjct: 810 DKAK*CCYHRSRGHDTEECFQLREAIEDLIKKVKLGRFIDKGHR 941


>BG448304 
          Length = 637

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 151 DKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAGR 184
           DKTK+C +H+   + T DC  LK+ IE LI+ GR
Sbjct: 98  DKTKYCRFHKCHRHLTDDCIHLKDTIEILIQRGR 199


>TC81466 similar to GP|5821143|dbj|BAA83713.1 RNA binding protein {Homo
           sapiens}, partial (3%)
          Length = 1109

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 23/68 (33%), Positives = 30/68 (43%), Gaps = 4/68 (5%)
 Frame = +1

Query: 181 RAGRSQLNDRGDRWRG*RQQGNRYKGDR*Q----DDRRRDDRRRTPTSDKKETLATRKKG 236
           R+GR     R D     R+   R+KGDR +    DDR R  R R+P   K    +TR+  
Sbjct: 175 RSGRRHHRSRRDESESDREDRRRHKGDRRRSRSPDDRSRRHRHRSPLGSKDLISSTRRTD 354

Query: 237 SEETFNKD 244
                N D
Sbjct: 355 KHRLRNGD 378


>BF006363 similar to GP|23496060|gb hypothetical protein {Plasmodium
           falciparum 3D7}, partial (0%)
          Length = 583

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 151 DKTKWCEYHRSAGYDTGDCF 170
           D +K+C +HR  GYDT DCF
Sbjct: 508 DISKYCRFHRCTGYDTNDCF 449


>BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkholderia
           cepacia}, partial (6%)
          Length = 1184

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 23/74 (31%), Positives = 40/74 (53%), Gaps = 4/74 (5%)
 Frame = +1

Query: 178 RLIRAGRSQLNDRGDRW--RG*RQQGNRYKGD--R*QDDRRRDDRRRTPTSDKKETLATR 233
           R+ RA R++ + +G     RG  +  NR KG+  R   ++RR  R++    ++++    +
Sbjct: 148 RIPRAARNERDGQGPHGTGRGADRPPNR-KGEARRAGRNKRRSQRQKERKENERKPKTKQ 324

Query: 234 KKGSEETFNKDLEP 247
           KKG EET  K  +P
Sbjct: 325 KKGGEETRKKKKQP 366


>TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
           aestivum}, partial (39%)
          Length = 630

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 30/97 (30%), Positives = 34/97 (34%)
 Frame = +3

Query: 167 GDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDK 226
           G C+T  +         RS  NDR DR       G    GDR        DR        
Sbjct: 345 GGCYTCGDTGHIARDCDRSDRNDRNDR------SGGGGGGDR--------DR-------- 458

Query: 227 KETLATRKKGSEETFNKDLEPPVGTINTIAGGFGGGG 263
               A    GS E F +D     G  N   GG+GGGG
Sbjct: 459 ----ACYTCGSFEHFARDCMRGGGNNNNGGGGYGGGG 557


>BQ751379 similar to GP|18376126|em conserved hypothetical protein
           {Neurospora crassa}, partial (30%)
          Length = 771

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 18/53 (33%), Positives = 27/53 (49%)
 Frame = -3

Query: 50  SCDRGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRR 102
           SC RGL  R    Q   +  R +  RR  +  +GER+++   Y  + S+ RRR
Sbjct: 301 SCQRGLGPRWGRAQ*S*Q*ARPSGHRRRDRCNAGERSSRGGEYQHRRSWCRRR 143


>TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Arabidopsis
           thaliana}, partial (24%)
          Length = 1153

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 15/51 (29%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
 Frame = +2

Query: 243 KDLEPPVGTINTIAGGFGGGGDIA-----------STRRRNVRAVTSVREY 282
           K + PP   I  ++GG GGGGD+            + +R+   A+ +  EY
Sbjct: 350 KVVPPPPQEIVAVSGGGGGGGDVVDESASMKAKRDALQRKGAAAMIAAEEY 502


>BQ143793 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
           DZ-HRGP {Volvox carteri f. nagariensis}, partial (19%)
          Length = 1100

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -3

Query: 176 IERLIRAGRSQLN----DRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLA 231
           + R +R  R +++    +R  R RG R  GNR KG     +R+ + + +     +KE   
Sbjct: 606 VVREVRVKRRKMDGANEERWGRERG-RVNGNRGKGRGGTSERKEEGKEKEERGKRKEGKG 430

Query: 232 TRKKGSE 238
             +KG E
Sbjct: 429 GERKGEE 409


>TC77695 similar to PIR|T09704|T09704 probable arginine/serine-rich splicing
           factor - alfalfa, partial (83%)
          Length = 1657

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 181 RAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKG 236
           R       D+G R R   +  +RY+ DR +  R RD RRR+ +         R +G
Sbjct: 436 RRHHDDYRDKGYRRRSRSRSYDRYERDRYRGGRDRDYRRRSRSRSASPDYKRRGRG 603


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.143    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,391,377
Number of Sequences: 36976
Number of extensions: 134405
Number of successful extensions: 972
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of query: 431
length of database: 9,014,727
effective HSP length: 99
effective length of query: 332
effective length of database: 5,354,103
effective search space: 1777562196
effective search space used: 1777562196
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)