TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.14
         (277 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...    95  3e-20
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir...    38  0.005
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO...    35  0.032
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch...    35  0.041
TC87381                                                                31  0.46
BG644717                                                               29  2.3
TC88195 similar to GP|19347889|gb|AAL86001.1 unknown protein {Ar...    28  3.0
TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iride...    27  6.6
TC88853 similar to SP|O04350|TBCA_ARATH Tubulin-specific chapero...    27  6.6
BQ750920 similar to GP|15811426|gb| glycine-rich protein {Coccid...    27  6.6

>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score = 94.7 bits (234), Expect = 3e-20
 Identities = 52/140 (37%), Positives = 72/140 (51%)
 Frame = +2

Query: 51  DQNRGLNDFRRQDPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLLLGDAE 110
           D  R L  F R  PP F G   PD A   ++EIE+IF V+Q  E  KV   T++L  +A+
Sbjct: 92  DGTRMLETFLRNHPPTFKGRYAPDGA*KWLKEIERIFRVMQCFETQKVQFGTHMLAEEAD 271

Query: 111 YWWKGTRGIMRANHEEVN*NSFRTAFLEKYFPTSARDEREAQFLTLGQGSMTVPEYASKL 170
            WW     ++  +   V    FR  FL +YFP   R ++E +FL L QG M+V EYA+K 
Sbjct: 272 DWWISLLPVLEQDDAVVTWAMFRKEFLGRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKF 451

Query: 171 ESLAKHFQFFNNHVDERYMC 190
             LA  +  ++    E   C
Sbjct: 452 VELATFYPHYSAETAEFSKC 511


>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
           (1%)
          Length = 726

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 28/115 (24%), Positives = 48/115 (41%)
 Frame = +2

Query: 3   QNMVNSNQLAEMVATLVQAMTVQTNDNAHRRATEDTRELHRLQREVALDQNRGLNDFRRQ 62
           Q  VN+ Q       L++A   + +D+     +  +R     +R+  + + +        
Sbjct: 200 QETVNAQQ------ALLEAQRRRNDDDGSGSDSSSSRSSRSHRRQTRMSKIK-------V 340

Query: 63  DPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLLLGDAEYWWKGTR 117
           D P F G   PD     +Q IE++F+  + AE  KV +    L   A  WWK  +
Sbjct: 341 DIPDF*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNLK 505


>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
           {Encephalitozoon cuniculi}, partial (0%)
          Length = 1247

 Score = 35.0 bits (79), Expect = 0.032
 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 2/185 (1%)
 Frame = -2

Query: 3   QNMVNSNQLAEMVATLVQAMTVQTNDNAHRRATEDTRELHRLQREVALDQNRGLNDFRRQ 62
           Q +VN+ Q       L++A   +  D+     +  +R     +RE  +      ND +  
Sbjct: 871 QEIVNAQQ------ALLEAQQKRFKDHVSSSDSLSSRSSRSQRREFQM------NDIK*- 731

Query: 63  DPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLLLGDAEYWWKGT-RGIMR 121
           D P F G   PD+    +Q +E++F+  +  E  KV +    L   A  WW+   R   R
Sbjct: 730 DIPDFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKR 551

Query: 122 ANHEEV-N*NSFRTAFLEKYFPTSARDEREAQFLTLGQGSMTVPEYASKLESLAKHFQFF 180
               ++      R     KY P               Q + T P+ + K  S  +HF   
Sbjct: 550 EGKSKIKTWEKMRQKLTRKYLPPH-----------YYQDNYTQPQLSKK--SSYRHFSPT 410

Query: 181 NNHVD 185
            N +D
Sbjct: 409 KNQID 395


>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
           partial (7%)
          Length = 2304

 Score = 34.7 bits (78), Expect = 0.041
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
 Frame = +2

Query: 7   NSNQLAEMVATLVQAMTVQTNDNAHRRATEDTRELHRLQREVALDQN---RGLNDFRRQ- 62
           N   L EM     Q   +Q   NA +   E   E  R + +V+   +   R  +  RRQ 
Sbjct: 428 NERSLQEMEDMRRQIQQLQEIINAQQALLE--AEQRRFEGDVSYSDSSSSRSSHSQRRQL 601

Query: 63  -------DPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLLLGDAEYWWKG 115
                  D P F G    D+    +Q IE++FE  +  E  KV +    L   A  WW+ 
Sbjct: 602 QMNDIKVDIPDFEGNLQLDDFLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWEN 781

Query: 116 TR 117
            +
Sbjct: 782 LK 787


>TC87381 
          Length = 814

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 20/62 (32%), Positives = 28/62 (44%)
 Frame = +3

Query: 56  LNDFRRQDPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLLLGDAEYWWKG 115
           +ND +  D P F G    D    *+Q IE +FE  +  E  KV +    L   A  WW+ 
Sbjct: 612 MNDIK-VDIPDFEGELQSDEFVD*LQAIECVFEYKEIPEDHKVKVVAV*LKKHALIWWEN 788

Query: 116 TR 117
            +
Sbjct: 789 LK 794


>BG644717 
          Length = 267

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 15/41 (36%), Positives = 23/41 (55%)
 Frame = -2

Query: 65  PKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLL 105
           P+F G    ++    + EI+KIFEV+  +    V LA+Y L
Sbjct: 260 PEFLGSQINEDPQNFLDEIKKIFEVMHVSGNDLVELASYQL 138


>TC88195 similar to GP|19347889|gb|AAL86001.1 unknown protein {Arabidopsis
            thaliana}, partial (55%)
          Length = 1716

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 195  NGLRAD-IKDSVRPLGIIRFQALVEKATEVELMKNRRMNGAGTGGPMRSSSQDNLGKGRF 253
            N L+A  I+ + RP+ I   +     AT     + R      T  P       + G+G +
Sbjct: 1149 NALQASPIQLAGRPIYIEERRPSTSSATRGGRGRGRGRGSYPTDAPRGRFGGRSSGRGYY 1328

Query: 254  QMKKPYQRPMGEGY 267
            Q    Y RP G+GY
Sbjct: 1329 QDTSDYSRPRGDGY 1370


>TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iridescent
           virus}, partial (1%)
          Length = 772

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 32  RRATEDTRELHRLQREVALDQNRGLNDFRRQDPPKFTGGTDPDNADL*IQEIEKIFEVLQ 91
           RR  +D        R     + + L +  + D P F G   PD     +Q IE++FE  +
Sbjct: 339 RRVDDDGSSDSSSSRSSRSHRRKTLMNDIKVDIPDFEGELQPDEFVDWLQAIERVFEYKE 518

Query: 92  TAEGAK 97
              GA+
Sbjct: 519 IPRGAQ 536


>TC88853 similar to SP|O04350|TBCA_ARATH Tubulin-specific chaperone A
           (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
           cofactor A homolog), partial (73%)
          Length = 689

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +3

Query: 43  RLQREVALDQNRG-----LNDFRRQDPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAK 97
           R + E AL+  +G     LN+  +++ P+       D A   I E+EK+FE ++  EG+ 
Sbjct: 384 RKRLEAALEDLKGILAELLNETDKKESPEI------DEARNTIVEVEKVFETIEA*EGSY 545

Query: 98  VSL 100
            S+
Sbjct: 546 TSV 554


>BQ750920 similar to GP|15811426|gb| glycine-rich protein {Coccidioides
           immitis}, partial (18%)
          Length = 729

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 19/39 (47%)
 Frame = +1

Query: 232 NGAGTGGPMRSSSQDNLGKGRFQMKKPYQRPMGEGYTLG 270
           NG+G GG  R  S  + G+GR  +       +G G  LG
Sbjct: 421 NGSGGGGGRRGGSSRSGGRGRSSLGSGISGAVGLGLLLG 537


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,342,125
Number of Sequences: 36976
Number of extensions: 68732
Number of successful extensions: 386
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of query: 277
length of database: 9,014,727
effective HSP length: 95
effective length of query: 182
effective length of database: 5,502,007
effective search space: 1001365274
effective search space used: 1001365274
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)