BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.11
(238 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC81448 weakly similar to OMNI|NT01MC3624 toxin secretion ATP-bi... 37 0.009
TC82391 similar to PIR|H85354|H85354 hypothetical protein AT4g30... 32 0.22
TC86160 weakly similar to PIR|T01605|T01605 phytocyanin At2g4479... 32 0.28
TC84423 similar to PIR|F84730|F84730 probable myosin heavy chain... 31 0.37
TC88440 weakly similar to GP|7293965|gb|AAF49324.1| Eip74EF gene... 31 0.37
CB065305 similar to PIR|F83216|F83 hypothetical protein PA3432 [... 30 0.82
TC80908 similar to GP|4966372|gb|AAD34703.1| ESTs gb|N38586 and ... 30 1.1
TC79029 similar to GP|21536695|gb|AAM61027.1 unknown {Arabidopsi... 29 1.8
BE323271 similar to PIR|T52305|T523 En/Spm-like transposon prote... 28 2.4
BI263340 weakly similar to PIR|T49223|T492 uclacyanin 3 [importe... 28 2.4
TC85559 similar to PIR|T07012|T07012 acetyl-CoA carboxylase (EC ... 28 3.1
TC77949 weakly similar to GP|11762218|gb|AAG40387.1 AT4g27520 {A... 28 3.1
BQ751233 similar to GP|18307448|em probable low-affinity hexose ... 28 3.1
TC84865 weakly similar to GP|1684845|gb|AAB48303.1| pinin {Canis... 28 4.1
TC87376 similar to GP|21592834|gb|AAM64784.1 putative beta-expan... 27 6.9
BI264572 similar to GP|6688812|emb L3 Ribosomal protein {Medicag... 27 6.9
TC92273 similar to GP|21622503|emb|CAD37050. related to OSBP-rel... 27 6.9
TC79328 weakly similar to GP|20259480|gb|AAM13860.1 unknown prot... 27 6.9
TC89897 similar to GP|17978983|gb|AAL47452.1 At1g79870/F19K16_17... 27 6.9
TC76389 homologue to GP|13359451|dbj|BAB33421. putative senescen... 27 6.9
>TC81448 weakly similar to OMNI|NT01MC3624 toxin secretion ATP-binding
protein putative {Magnetococcus sp. MC-1}, partial (4%)
Length = 655
Score = 36.6 bits (83), Expect = 0.009
Identities = 33/110 (30%), Positives = 45/110 (40%)
Frame = +2
Query: 6 GGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVF 65
GG +P P G AG P+ P+P AG A PA D G + G+P
Sbjct: 161 GGDGKAPAPGGAPAGKAPAPGGDGKAPAPGGAPAGKA------PAPGGDAGKAAPGTPPA 322
Query: 66 CSPSAETNHAISGDQAGPSASQQPSLIAFMLSNASLEVKAKTESVNAGKA 115
P T SG + P+A+ P+ A S + A T S N+ K+
Sbjct: 323 GGPPGVTP---SGSASPPAAT--PAAAAPKSSTGATGTTAATGSGNSLKS 457
>TC82391 similar to PIR|H85354|H85354 hypothetical protein AT4g30350
[imported] - Arabidopsis thaliana, partial (13%)
Length = 1065
Score = 32.0 bits (71), Expect = 0.22
Identities = 21/55 (38%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Frame = -3
Query: 23 PSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPS---AETNH 74
P + Q PSPNL P A+ ARPAS+ S G +F +P+ TNH
Sbjct: 526 PITKAYQPPPSPNLATNLPISATAARPASA------SAGCCIFPNPNPTGCSTNH 380
>TC86160 weakly similar to PIR|T01605|T01605 phytocyanin At2g44790
[imported] - Arabidopsis thaliana, partial (34%)
Length = 918
Score = 31.6 bits (70), Expect = 0.28
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Frame = +3
Query: 4 HVGGAESSPCPEGVSAGLKPSENSLQTTPS--PNLTEAGPAGASLARPASSQDEGA 57
+V A ++P P G K + TTPS P+ T + P+ + P+ +D GA
Sbjct: 474 NVVAASTTPTPSGTPPPTKSPSTTPSTTPSTTPSTTPSAPSETNSTTPSPPKDNGA 641
>TC84423 similar to PIR|F84730|F84730 probable myosin heavy chain [imported]
- Arabidopsis thaliana, partial (10%)
Length = 787
Score = 31.2 bits (69), Expect = 0.37
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +2
Query: 84 SASQQPSLIAFMLSNASLEVKAKTESV----NAGKATCILQGQENAFLQSELGATNEALA 139
S S+ SL++ LSN S E++ K +S+ N A Q + L+ + ATN A
Sbjct: 146 SFSKTDSLLSQALSNNS-ELEQKVKSLEDLHNESGAVAATASQRSLELEGHIEATNAAAE 322
Query: 140 DVRSQL-EAENQALADMESKTKTSQARLVADVAAEVVE 176
+ +SQL E E + +A + + Q + + A E
Sbjct: 323 EAKSQLRELETRFIAAEQKNVELEQQLNLVQLKANDAE 436
>TC88440 weakly similar to GP|7293965|gb|AAF49324.1| Eip74EF gene product
{Drosophila melanogaster}, partial (5%)
Length = 711
Score = 31.2 bits (69), Expect = 0.37
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +1
Query: 41 PAGASLARPASSQDEGANSQGSPVFCSPSAETNHAISGDQAGPSASQQPSLIAFMLSNAS 100
PAGA+ PA GA SPS + S AGPS S P+ A+ + +
Sbjct: 289 PAGAT--PPAGGPPAGATPPAGGPSSSPSGAAATSSSASAAGPSGSSTPTSAAYKIESGL 462
Query: 101 LEVKA 105
V A
Sbjct: 463 SSVAA 477
>CB065305 similar to PIR|F83216|F83 hypothetical protein PA3432 [imported] -
Pseudomonas aeruginosa (strain PAO1), partial (90%)
Length = 594
Score = 30.0 bits (66), Expect = 0.82
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +3
Query: 17 VSAGLKPSENSLQTTPSPNLTEAG------PAGASLARPASSQDEGANSQGSPVFCSPSA 70
++AG+K S S + P+PN AG A S+A+P + G SQ + C P+
Sbjct: 279 INAGMKNSSISAISQPAPNWRVAGFTKPQANADRSIAKPITPPGMGQPSQAAS--CPPNR 452
Query: 71 ETNHAISGDQAGPSASQQPSLIAFMLSNAS 100
S SAS++ A LSNA+
Sbjct: 453 N-----SASNTASSASRR----AIFLSNAA 515
>TC80908 similar to GP|4966372|gb|AAD34703.1| ESTs gb|N38586 and gb|N38613
come from this gene. {Arabidopsis thaliana}, partial
(81%)
Length = 1442
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = +3
Query: 14 PEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANS 59
P G SA + P++ S T+PS ++ G + S P+S Q ANS
Sbjct: 741 PRGYSAAVSPNQTSGATSPS-KVSYDGRSSLSSWYPSSQQSSAANS 875
>TC79029 similar to GP|21536695|gb|AAM61027.1 unknown {Arabidopsis
thaliana}, partial (26%)
Length = 707
Score = 28.9 bits (63), Expect = 1.8
Identities = 25/88 (28%), Positives = 38/88 (42%), Gaps = 5/88 (5%)
Frame = +2
Query: 23 PSENSLQTTPSPNLTEA-----GPAGASLARPASSQDEGANSQGSPVFCSPSAETNHAIS 77
PS ++ TPSP ++ + GP+ + + PA + A+ G P P AE+
Sbjct: 224 PSSSTRSPTPSPAVSPSTSSSPGPSPNTSSPPAPGSNSPASGPGGPGLEQPGAES----- 388
Query: 78 GDQAGPSASQQPSLIAFMLSNASLEVKA 105
PSA AF +SN + V A
Sbjct: 389 -----PSA-------AFSISNTFVAVTA 436
>BE323271 similar to PIR|T52305|T523 En/Spm-like transposon protein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 431
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 2 PKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPA 42
P H GG +P P G P + +TPS N T + P+
Sbjct: 216 PSH-GGGYYTPTPPSTGCGYSPPHDPSTSTPSHNQTPSTPS 335
>BI263340 weakly similar to PIR|T49223|T492 uclacyanin 3 [imported] -
Arabidopsis thaliana, partial (14%)
Length = 681
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 2 PKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPA 42
P H GG +P P G P + +TPS N T + P+
Sbjct: 225 PSH-GGGYYTPTPPSTGCGYSPPHDPSTSTPSHNQTPSTPS 344
>TC85559 similar to PIR|T07012|T07012 acetyl-CoA carboxylase (EC 6.4.1.2) -
potato chloroplast, partial (66%)
Length = 5011
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/56 (26%), Positives = 25/56 (43%)
Frame = +3
Query: 8 AESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSP 63
+E P +G+ +PSENSL+ PS N E + + ++G + P
Sbjct: 3465 SEDEPSEKGLEDEDEPSENSLEDEPSENSLEDEDEPSENSLEDEPSEKGLEDEDEP 3632
>TC77949 weakly similar to GP|11762218|gb|AAG40387.1 AT4g27520 {Arabidopsis
thaliana}, partial (34%)
Length = 1297
Score = 28.1 bits (61), Expect = 3.1
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Frame = +3
Query: 9 ESSPCPEGVSAGLKP-SENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCS 67
+SSP P + GL P S + TTPSP+ + P A S SPV +
Sbjct: 501 KSSPSPS--AGGLSPPSPSPTTTTPSPSGSPPSPVAIPPASSPVPTSGPTASSPSPVVST 674
Query: 68 PSA------ETNHAISGDQAGPSASQQPS 90
P A + +S AG + PS
Sbjct: 675 PPAGGPMASSPSPVVSTPPAGGPMASSPS 761
>BQ751233 similar to GP|18307448|em probable low-affinity hexose transporter
HXT3 {Neurospora crassa}, partial (30%)
Length = 659
Score = 28.1 bits (61), Expect = 3.1
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 7/64 (10%)
Frame = +1
Query: 2 PKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPN---LTEAGP----AGASLARPASSQD 54
P V + S P P G S+ S + PSP+ T P + AS +RP SS
Sbjct: 418 PASVSSSRSRPSPPGTSSPSAVSSTVSASAPSPSSSPCTSPSPLRPSSAASSSRPTSSSS 597
Query: 55 EGAN 58
A+
Sbjct: 598 PSAS 609
>TC84865 weakly similar to GP|1684845|gb|AAB48303.1| pinin {Canis
familiaris}, partial (4%)
Length = 559
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 28 LQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAETNHAIS 77
L TT +PN + A P+G + A S+ + S +P S S+ + + S
Sbjct: 252 LLTTYNPNTSLAAPSGGRMGGSAFSKSSSSRSYSAPSSSSSSSWSRRSYS 401
>TC87376 similar to GP|21592834|gb|AAM64784.1 putative
beta-expansin/allergen protein {Arabidopsis thaliana},
partial (81%)
Length = 976
Score = 26.9 bits (58), Expect = 6.9
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 1/52 (1%)
Frame = -2
Query: 32 PSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAETNH-AISGDQAG 82
PSP L GP +LA + + Q P+ SPSA A+ G Q G
Sbjct: 348 PSPFLYNTGPTAPTLALNGFTSTKLPYPQAPPLLPSPSASPYQVAVPGCQCG 193
>BI264572 similar to GP|6688812|emb L3 Ribosomal protein {Medicago sativa
subsp. x varia}, partial (39%)
Length = 558
Score = 26.9 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (59%)
Frame = +1
Query: 118 ILQGQENAFLQSELGATNEALADVRSQLEAENQAL 152
++QGQE Q + +T E A + ++LEA +AL
Sbjct: 385 LVQGQEEGVHQVQQESTREGKATIEAELEALKKAL 489
>TC92273 similar to GP|21622503|emb|CAD37050. related to OSBP-related
protein 7 {Neurospora crassa}, partial (36%)
Length = 1517
Score = 26.9 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 83 PSASQQPSLIAFMLSNASLEVKAKTESVNAGKATCILQ 120
P+ Q PSLIAF+ N ++ + V+A + +LQ
Sbjct: 207 PATVQPPSLIAFVRKNVGKDLSTISMPVSANEPISLLQ 320
>TC79328 weakly similar to GP|20259480|gb|AAM13860.1 unknown protein
{Arabidopsis thaliana}, partial (18%)
Length = 772
Score = 26.9 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +3
Query: 198 LDGMGAFKKITPHGLVGPDDPPGFTAEHFAVA 229
+DG G ++TPHG+V T AVA
Sbjct: 417 VDGTGTLTRLTPHGVVDYSPAVSLTGNLIAVA 512
>TC89897 similar to GP|17978983|gb|AAL47452.1 At1g79870/F19K16_17
{Arabidopsis thaliana}, partial (53%)
Length = 1100
Score = 26.9 bits (58), Expect = 6.9
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 18/116 (15%)
Frame = +1
Query: 54 DEGANSQGSPVFCSPSAETNHAISG---DQAGPSA----------SQQPSLIAFM----L 96
D ANSQ V C+ + ET H ++ D GP QP L+A + L
Sbjct: 454 DLAANSQILVVACALTDETRHIVNREVIDALGPKGVIINIGRGPIIDQPELVAALVERRL 633
Query: 97 SNASLEVKAKTESVNAGKATCILQGQENAFLQSELGA-TNEALADVRSQLEAENQA 151
A L+V V+ L G EN L +G+ T E D+ L A +A
Sbjct: 634 GGAGLDVLENEPDVSEE-----LIGLENVVLTPHIGSDTVETCNDMSDLLIANLEA 786
>TC76389 homologue to GP|13359451|dbj|BAB33421. putative
senescence-associated protein {Pisum sativum}, partial
(51%)
Length = 808
Score = 26.9 bits (58), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 14 PEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLA 47
P G S + +E + + +PNL E P G S++
Sbjct: 123 PAGPSRDTRDNEKIVHSASAPNLVENNPVGVSIS 22
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.307 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,359,085
Number of Sequences: 36976
Number of extensions: 55401
Number of successful extensions: 280
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of query: 238
length of database: 9,014,727
effective HSP length: 93
effective length of query: 145
effective length of database: 5,575,959
effective search space: 808514055
effective search space used: 808514055
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0134.11