TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0133.3
         (700 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW693762                                                              202  3e-52
TC85818 homologue to GP|21261784|emb|CAD32500. protein kinase Ck...   109  4e-24
TC79270 weakly similar to GP|17473774|gb|AAL38323.1 unknown prot...    43  4e-04
TC82893 weakly similar to GP|11762112|gb|AAG40334.1 AT3g11890 {A...    40  0.004
AW689316 similar to GP|20259452|g unknown protein {Arabidopsis t...    32  0.63
TC79310 similar to GP|19920098|gb|AAM08530.1 Putative calmodulin...    32  1.1
TC79874 similar to GP|17065608|gb|AAL33784.1 unknown protein {Ar...    31  1.4
BQ136987                                                               31  1.8
AW684341 homologue to GP|1730449|emb| POU domain protein {Danio ...    30  3.1
TC89606 similar to GP|7239157|gb|AAF43095.1| homeodomain protein...    28  9.2

>AW693762 
          Length = 655

 Score =  202 bits (515), Expect = 3e-52
 Identities = 128/248 (51%), Positives = 152/248 (60%), Gaps = 19/248 (7%)
 Frame = +1

Query: 8   TATTMSLDMDLALFDD---DEFEIPLTQTATI------------HRPLKKHKL-ETTAFG 51
           T TTM+ D D   FD+   D+FE+PLTQT +              RP KK K  +TT+F 
Sbjct: 10  TPTTMA-DSDHTQFDNNDNDDFEVPLTQTQSPILKPLSQSNNQNQRPSKKPKTNKTTSF- 183

Query: 52  GSGKENVPPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSSASVSAFVIS 111
             GKEN+PP         +GY+I N SLDF+PST+DS  T                 V S
Sbjct: 184 -PGKENIPPF--------EGYDIGNSSLDFVPSTLDSDST-----------------VFS 285

Query: 112 SPVKVKMKGTA--YFGNSIESKLVVSRANAINNAEAGSELNLSDELDGSVRCPLCEVDIS 169
           SPV    K     YF NS+ES+LV SR NA +      E+NL DE   SV CPLC VDIS
Sbjct: 286 SPVSELKKSNKRDYFSNSLESRLVASRKNAFD-----LEVNLCDEFGSSVDCPLCGVDIS 450

Query: 170 NLTEEQRHLHTNDCLDR-GDDVAVRDDNVDAQFAPKVSRVVDWLRDLGLGKYEDVFVREE 228
           NLTEEQR+LHTNDCLD+ G+DVA  +D+V AQF PK S VV+W+R LGL KYE+VFVREE
Sbjct: 451 NLTEEQRNLHTNDCLDKSGEDVAPPNDDVGAQFGPKNSPVVEWIRGLGLAKYEEVFVREE 630

Query: 229 VDWDTLQW 236
           VDWDTLQW
Sbjct: 631 VDWDTLQW 654


>TC85818 homologue to GP|21261784|emb|CAD32500. protein kinase Ck2
           regulatory subunit 2 {Nicotiana tabacum}, partial (44%)
          Length = 827

 Score =  109 bits (272), Expect = 4e-24
 Identities = 50/56 (89%), Positives = 53/56 (94%)
 Frame = +2

Query: 422 ARLVNMNIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVL 477
           ARLVNMNIGIPYDKLHILPLNQK+EIAGI VTCLDANHCPGSI+ILF+PPNGK  L
Sbjct: 290 ARLVNMNIGIPYDKLHILPLNQKIEIAGISVTCLDANHCPGSILILFEPPNGKRSL 457


>TC79270 weakly similar to GP|17473774|gb|AAL38323.1 unknown protein
            {Arabidopsis thaliana}, partial (18%)
          Length = 1288

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 23/49 (46%), Positives = 33/49 (66%)
 Frame = +3

Query: 212  LRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHAL 260
            L+ LGL KY+ +F  EEVD   L+ + E DL  +G+  +GPRKK++ AL
Sbjct: 1047 LQALGLQKYQILFKAEEVDMTALRQMGENDLKELGI-PMGPRKKLLLAL 1190


>TC82893 weakly similar to GP|11762112|gb|AAG40334.1 AT3g11890 {Arabidopsis
           thaliana}, partial (9%)
          Length = 967

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 22/72 (30%), Positives = 40/72 (55%)
 Frame = +2

Query: 189 DVAVRDDNVDAQFAPKVSRVVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVT 248
           D ++R  N++ +   +   +  WL  LGL ++  +F  + +    L  LT + L  MG  
Sbjct: 563 DRSLRASNLERKLE-RAGGLNKWLASLGLEQFVRMFQGKIISKYQLVNLTMKKLKDMGAN 739

Query: 249 ALGPRKKIVHAL 260
           A+GPR+K++HA+
Sbjct: 740 AVGPRRKLIHAM 775


>AW689316 similar to GP|20259452|g unknown protein {Arabidopsis thaliana},
           partial (13%)
          Length = 648

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 26/67 (38%), Positives = 34/67 (49%)
 Frame = +2

Query: 92  ALTDSSSSSSSASVSAFVISSPVKVKMKGTAYFGNSIESKLVVSRANAINNAEAGSELNL 151
           A+  SSS SS  SVS+ V+ S  K   KGT     S+ES L  S+            LN+
Sbjct: 329 AMDRSSSLSSGTSVSSGVLLSQAKSLGKGTE---RSLESVLHASKQKVTAIESMLRGLNM 499

Query: 152 SDELDGS 158
           SD+ +GS
Sbjct: 500 SDKHNGS 520


>TC79310 similar to GP|19920098|gb|AAM08530.1 Putative calmodulin-binding
           protein similar to ER66 {Oryza sativa}, partial (13%)
          Length = 733

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 53  SGKENVPPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSS 102
           S K N+  NA S+ +  D  ++ + S   IP+T  SV +  TDS S +SS
Sbjct: 502 SNKSNIGGNADSNEVISDSQKVNSPSSG-IPATYSSVPSLSTDSMSPTSS 648


>TC79874 similar to GP|17065608|gb|AAL33784.1 unknown protein {Arabidopsis
           thaliana}, partial (88%)
          Length = 1154

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/79 (32%), Positives = 37/79 (45%)
 Frame = -2

Query: 95  DSSSSSSSASVSAFVISSPVKVKMKGTAYFGNSIESKLVVSRANAINNAEAGSELNLSDE 154
           DSS  ++ A V  F   SP +         G SIE +L+   A+AI+ A  GSE+ +S  
Sbjct: 577 DSSPPANIARVPFFAPRSPPET--------GASIE*QLLTDAASAISTAREGSEVVMSTR 422

Query: 155 LDGSVRCPLCEVDISNLTE 173
           +   +R     V  S  TE
Sbjct: 421 MPPDLRPARAPVFGSRRTE 365


>BQ136987 
          Length = 681

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 37/134 (27%), Positives = 59/134 (43%), Gaps = 6/134 (4%)
 Frame = +2

Query: 13  SLDMDLALFDDDEFEIPLTQTATIHRPLKKHKLETTAFGGSGKENVPPNASSSTIH---D 69
           +L  D+  F D + + P  QT      + K+        G G + + P+   + +H   D
Sbjct: 185 NLHFDMVHFGDTKKDQPFYQTPLAPVDILKNY-------GKGFKRLLPDDEGNILHPVND 343

Query: 70  DGYEIENCSLDFIPSTIDSV---GTALTDSSSSSSSASVSAFVISSPVKVKMKGTAYFGN 126
            G    N +   + STI+ +   GT    SSSSS SA  S  +++ P      G ++ G 
Sbjct: 344 FGLVTNNENEKKLLSTIEIMKMAGTRFIQSSSSSKSA--SGLILNHPF-----GFSFSGL 502

Query: 127 SIESKLVVSRANAI 140
           S E K  VS A ++
Sbjct: 503 SDEEKENVSLAESL 544


>AW684341 homologue to GP|1730449|emb| POU domain protein {Danio rerio},
           partial (2%)
          Length = 308

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 418 FECFARLVNMNIGIPYDKLHILPLNQKVEIAGIDVTCLD 456
           F CFA L +  + I    + I+ L +KVE+  IDV C D
Sbjct: 38  FACFAHLNDSQLKIIIIIIIIINLKRKVEVNWIDVKCRD 154


>TC89606 similar to GP|7239157|gb|AAF43095.1| homeodomain protein {Malus x
           domestica}, partial (12%)
          Length = 1018

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/76 (18%), Positives = 42/76 (54%)
 Frame = +2

Query: 262 EFRKGIAASNEKPEDALAEPRRNRNQNVKMQPHRPERKVDGTSKPAANKKITEYFPGFAT 321
           +F  G+A+    P  +      + +  ++++ H+ +R +D ++  + ++   +   GF++
Sbjct: 197 DFNMGVASPVPFPSSS------SYSSIIQLKTHQNQRTLDCSTSNSMSQDYQQAIFGFSS 358

Query: 322 NGKKVSTAPEEQQEMK 337
           NG + S++ ++QQ+ +
Sbjct: 359 NGFERSSSSQQQQQQQ 406


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,672,569
Number of Sequences: 36976
Number of extensions: 320328
Number of successful extensions: 2132
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2013
length of query: 700
length of database: 9,014,727
effective HSP length: 103
effective length of query: 597
effective length of database: 5,206,199
effective search space: 3108100803
effective search space used: 3108100803
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)