Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0132.6
         (162 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85972 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein ...   289  4e-79
TC85973 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein ...   289  4e-79
TC78205 homologue to PIR|T47559|T47559 60S ribosomal protein-lik...   288  7e-79
AJ502894 weakly similar to SP|P38665|RL24 60S ribosomal protein ...   119  7e-28
BQ137416 similar to GP|10180025|gb| 60S ribosomal protein L24 {P...   109  4e-25
AL373858 SP|O65743|RL24 60S ribosomal protein L24. [Chickpea  Ga...    57  4e-17
TC85155 similar to PIR|T00407|T00407 60S ribosomal protein L30 [...    80  4e-16
AL389674 similar to SP|P38665|RL24_ 60S ribosomal protein L24 (L...    55  2e-08
BQ151366 similar to GP|20146300|dbj hypothetical protein~similar...    32  0.085
BQ151233 weakly similar to PIR|T00407|T004 60S ribosomal protein...    32  0.085
BQ143793 weakly similar to GP|6523547|emb| hydroxyproline-rich g...    30  0.32
BQ150381 similar to GP|595768|gb|AA non-functional lacZ alpha pe...    30  0.32
AA660209 similar to GP|6642637|gb|A unknown protein {Arabidopsis...    30  0.55
BQ137240 similar to PIR|F75311|F753 ABC transporter  ATP-binding...    29  0.94
BG645721                                                               29  0.94
BQ141703                                                               28  1.6
BQ144083 similar to GP|6523547|emb| hydroxyproline-rich glycopro...    28  1.6
BQ151355 homologue to GP|12620658|gb| ID556 {Bradyrhizobium japo...    28  2.1
BQ750868 weakly similar to GP|4104436|gb|A acetolactate synthase...    28  2.1
BQ135858 similar to GP|23491723|db formin homology protein A {Di...    27  3.6

>TC85972 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein L24.
           [Chickpea  Garbanzo] {Cicer arietinum}, partial (98%)
          Length = 764

 Score =  289 bits (739), Expect = 4e-79
 Identities = 146/164 (89%), Positives = 156/164 (95%), Gaps = 2/164 (1%)
 Frame = +1

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 73  MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 252

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVK 120
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER+K
Sbjct: 253 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 432

Query: 121 KTKDEKRAKKAEVQTKAQKSQGKGG--KVAAPKGPKLGGGGGKR 162
           KTKDEK+AKKAEV +KAQKS GKG   K A PKGPK+GGGGGKR
Sbjct: 433 KTKDEKKAKKAEVASKAQKS-GKGNVQKGAMPKGPKMGGGGGKR 561


>TC85973 homologue to SP|O65743|RL24_CICAR 60S ribosomal protein L24.
           [Chickpea  Garbanzo] {Cicer arietinum}, partial (98%)
          Length = 725

 Score =  289 bits (739), Expect = 4e-79
 Identities = 146/164 (89%), Positives = 156/164 (95%), Gaps = 2/164 (1%)
 Frame = +2

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 59  MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 238

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVK 120
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER+K
Sbjct: 239 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 418

Query: 121 KTKDEKRAKKAEVQTKAQKSQGKGG--KVAAPKGPKLGGGGGKR 162
           KTKDEK+AKKAEV +KAQKS GKG   K A PKGPK+GGGGGKR
Sbjct: 419 KTKDEKKAKKAEVASKAQKS-GKGNVQKGAMPKGPKMGGGGGKR 547


>TC78205 homologue to PIR|T47559|T47559 60S ribosomal protein-like -
           Arabidopsis thaliana, partial (93%)
          Length = 858

 Score =  288 bits (737), Expect = 7e-79
 Identities = 145/163 (88%), Positives = 153/163 (92%), Gaps = 1/163 (0%)
 Frame = +1

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 55  MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 234

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVK 120
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERVK
Sbjct: 235 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVK 414

Query: 121 KTKDEKRAKKAEVQTKAQKSQGKGG-KVAAPKGPKLGGGGGKR 162
           KTKDEK+AKKAE Q KAQKS GKG     A KGPKLGGGGGKR
Sbjct: 415 KTKDEKKAKKAESQAKAQKSVGKGNVSKGASKGPKLGGGGGKR 543


>AJ502894 weakly similar to SP|P38665|RL24 60S ribosomal protein L24 (L30).
           [Yeast] {Kluyveromyces lactis}, partial (84%)
          Length = 501

 Score =  119 bits (297), Expect = 7e-28
 Identities = 59/137 (43%), Positives = 91/137 (66%)
 Frame = +2

Query: 3   LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
           +K E   F+G KIYPG+G  ++RSD++ + FV SK +  F  R  P K++WT ++R+ HK
Sbjct: 68  MKIESDSFTGNKIYPGKGKLYVRSDNRSYRFVGSKSESLFLQRKNPRKISWTTVYRRMHK 247

Query: 63  KDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVKKT 122
           K I +E A+K+ R   K + R+IVGA+ E I+ +R +KPEVR+AAR  A RE KE  K  
Sbjct: 248 KGITEEVAKKRTRRAVK-HQRAIVGASWEAIKAKRNQKPEVREAARAEAARESKENKKAE 424

Query: 123 KDEKRAKKAEVQTKAQK 139
           + +++A+KA++   A +
Sbjct: 425 QSKRKAEKAKLAQVASR 475


>BQ137416 similar to GP|10180025|gb| 60S ribosomal protein L24 {Prunus
           avium}, partial (37%)
          Length = 475

 Score =  109 bits (273), Expect = 4e-25
 Identities = 68/147 (46%), Positives = 83/147 (56%), Gaps = 7/147 (4%)
 Frame = +1

Query: 13  AKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDIAQEAARK 72
           AKIYPGRGIRFIRSDSQVFL VNSKCKRYFHN+LKPSKLTWTAM+R+  ++ I   +  K
Sbjct: 7   AKIYPGRGIRFIRSDSQVFLXVNSKCKRYFHNKLKPSKLTWTAMYREATQEGICPRSCEK 186

Query: 73  KRRSTKKPYSRS-IVGATLEVIQKRRTEK----PEVRDAAREAALREIKER--VKKTKDE 125
           +  S +K   +  ++   LEVI K    K    P +          EIK     K   DE
Sbjct: 187 EA*SXQKALLQGPLLXLPLEVIXKEEIRKSQRVPGIAXPEEACPFXEIKGEG*KKNQXDE 366

Query: 126 KRAKKAEVQTKAQKSQGKGGKVAAPKG 152
           K  +      + QK Q  G K+   KG
Sbjct: 367 KEGE------ERQKGQX*GTKILLXKG 429



 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 42/109 (38%), Positives = 55/109 (49%), Gaps = 8/109 (7%)
 Frame = +2

Query: 48  PSKLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATL-EVIQKRRTEK------ 100
           P  L       KQHKK  AQEA +K+RR+TKKPY +      L ++  K+R+EK      
Sbjct: 113 PQSLHGLPCIGKQHKKVFAQEAVKKRRRATKKPYFKVXCWXYLWKLFXKKRSEKARGFRG 292

Query: 101 -PEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKVA 148
            P  +  A    LRE  ER  K   +K  K  +V+ KAQKS    G V+
Sbjct: 293 LPXQKKPALSXKLRERGERKTKXMRKKAKKGRKVKXKAQKSCWXKGNVS 439


>AL373858 SP|O65743|RL24 60S ribosomal protein L24. [Chickpea  Garbanzo]
           {Cicer arietinum}, partial (34%)
          Length = 466

 Score = 57.4 bits (137), Expect(2) = 4e-17
 Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
 Frame = +3

Query: 114 EIKERVKKTKDEKRAKKAEVQTKAQKSQGK---GGKVAAPKGP-KLGGGGGKR 162
           EIKER+KKTKDEK+AKKAEV +KAQKS+          AP+GP    GGGGKR
Sbjct: 162 EIKERIKKTKDEKKAKKAEVASKAQKSRETEMFTNGCYAPQGP*NWAGGGGKR 320



 Score = 46.2 bits (108), Expect(2) = 4e-17
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +2

Query: 69 AARKKRRSTKKPYSRSIVGATLEVIQKR 96
          A +K+RR+TKKPYSRSIVGATLEVI  +
Sbjct: 2  AVKKRRRATKKPYSRSIVGATLEVISNK 85


>TC85155 similar to PIR|T00407|T00407 60S ribosomal protein L30 [imported] -
           Arabidopsis thaliana, partial (62%)
          Length = 1190

 Score = 80.1 bits (196), Expect = 4e-16
 Identities = 45/135 (33%), Positives = 73/135 (53%), Gaps = 2/135 (1%)
 Frame = +1

Query: 3   LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
           ++ E C F  + +YPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R+ H 
Sbjct: 463 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 642

Query: 63  KDIAQEAARKKRRSTKKP--YSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVK 120
           KD+ Q++  +  R   +P  Y R++    L+ I K    K +V  A    A+R    + K
Sbjct: 643 KDMTQDSTFEFERKRNRPERYDRNLTEEVLKAIPK--IAKIQVSRAESHHAIR---MKGK 807

Query: 121 KTKDEKRAKKAEVQT 135
           K K +K A K   Q+
Sbjct: 808 KKKVQKEAAKEYEQS 852


>AL389674 similar to SP|P38665|RL24_ 60S ribosomal protein L24 (L30). [Yeast]
           {Kluyveromyces lactis}, partial (34%)
          Length = 437

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 30/68 (44%), Positives = 41/68 (60%)
 Frame = -2

Query: 50  KLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAARE 109
           KL+WT ++R+ HKK I +E A  + R T K    S      ++I+ +R   PEVR+AAR 
Sbjct: 421 KLSWTQVYRRMHKKGITEEVANIRTRRTVKLSKSSCRLHLGKLIRAKRIP*PEVREAARP 242

Query: 110 AALREIKE 117
            ALRE KE
Sbjct: 241 TALREAKE 218


>BQ151366 similar to GP|20146300|dbj hypothetical protein~similar to Oryza
           sativa OSJNBa0058E19.20, partial (9%)
          Length = 1137

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 31/101 (30%), Positives = 41/101 (39%), Gaps = 6/101 (5%)
 Frame = +2

Query: 68  EAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVKKTK--DE 125
           E  RKKRR+   P  +   G       KRR           EA  +E +E+ KK +   +
Sbjct: 152 ERKRKKRRTRPGPPRKEKSGEP-----KRRGGPGRGGAKKPEATNKEGEEKQKKDEPAQD 316

Query: 126 KRAKKAEVQTKAQKSQGKGGKVAAPKGP----KLGGGGGKR 162
           +R K +E Q       G   + A  KGP    K GGG   R
Sbjct: 317 RRGKASEQQPPPPAQPGAKRRTAGTKGPPRGSKKGGGNADR 439


>BQ151233 weakly similar to PIR|T00407|T004 60S ribosomal protein L30
           [imported] - Arabidopsis thaliana, partial (37%)
          Length = 775

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 33  FVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDIAQEAA--RKKRRSTKKPYSRSIVGATL 90
           FV+ +    F  +  P  + WT  + + H KD+ Q++    K++R+  + Y R++    L
Sbjct: 194 FVDPRATINFKMKRNPQ*VKWTNAYMRMHGKDLTQDSTFEFKRKRT*PERYDRNLTEEFL 373

Query: 91  EVIQK 95
           + I K
Sbjct: 374 KAIPK 388



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 16  YPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPS 49
           YPG GI    +D+ +F+F  SK    F N  + S
Sbjct: 142 YPGHGIHVDPNDANIFVFCRSKSHNKFQNEEESS 243


>BQ143793 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
           DZ-HRGP {Volvox carteri f. nagariensis}, partial (19%)
          Length = 1100

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 104 RDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPKLGGGGGKR 162
           R    +A  R+   + +K ++ KR K  + + K ++ +G G  +   +    GGGGGKR
Sbjct: 509 RGGGGQAKERKRGRKRRKGENAKREKGGKERGKKERKKGAGNGIYEGEYKGGGGGGGKR 333



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/49 (28%), Positives = 27/49 (54%)
 Frame = -2

Query: 114 EIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPKLGGGGGKR 162
           ++ +R  ++K E+   +   + K  + +GKGGK    +G + G  GG+R
Sbjct: 553 KVGKRKGESKWEQGQGEGGDKRKKGRGEGKGGKGKTQRGKRGGKKGGRR 407


>BQ150381 similar to GP|595768|gb|AA non-functional lacZ alpha peptide
           {unidentified cloning vector}, partial (10%)
          Length = 545

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -1

Query: 94  QKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKVAAPKGP 153
           Q++R +  E +   R+  +    E +KKTK++    K + Q + Q   GKG K    +GP
Sbjct: 218 QRKRKDNRETKAHKRKKTI----ETIKKTKNDAST*KTKRQKRMQHPDGKGEK----RGP 63

Query: 154 K 154
           K
Sbjct: 62  K 60


>AA660209 similar to GP|6642637|gb|A unknown protein {Arabidopsis thaliana},
           partial (4%)
          Length = 544

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 94  QKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGK 143
           +K+ + K +V++   E      KE++KK KD+KR +K     + +K  GK
Sbjct: 1   EKKDSRKEKVKEKKEEG-----KEKIKKNKDDKRGEK-RXNKEEKKGHGK 132


>BQ137240 similar to PIR|F75311|F753 ABC transporter  ATP-binding protein -
           Deinococcus radiodurans (strain R1), partial (4%)
          Length = 1094

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 23/88 (26%), Positives = 41/88 (46%)
 Frame = +3

Query: 75  RSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQ 134
           R+ KK  +++      E  +K RT   + R+A      R+ K+R +K    K  K A+ +
Sbjct: 126 RNRKKNDTQATKNDKEEPRKKERTRPRKPREARGPERWRKRKKRSRK----KEKKDAKTR 293

Query: 135 TKAQKSQGKGGKVAAPKGPKLGGGGGKR 162
           T+ ++   +GG+    K      GG +R
Sbjct: 294 TRDRQKDREGGRGRR*KQTNRESGGERR 377


>BG645721 
          Length = 779

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 19/62 (30%), Positives = 31/62 (49%)
 Frame = -2

Query: 95  KRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPK 154
           K   +K + R   +    RE  ++ KKTK+EK+ ++   Q K +  Q   G   +PK P+
Sbjct: 481 KSNNKKQDRRTNKKNHKTRETIKQ-KKTKEEKKNRETIQQMKKKNHQTMLGFTESPKCPQ 305

Query: 155 LG 156
            G
Sbjct: 304 KG 299


>BQ141703 
          Length = 1323

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 25/90 (27%), Positives = 41/90 (44%), Gaps = 16/90 (17%)
 Frame = +3

Query: 58   RKQHKKDIAQEAARKKRRSTKKPY-SRSIVGATLEVIQKRRTEKPEVRDAAR-------- 108
            R  H+K +    AR+KRR T      ++   A  E ++ +  E   VRDA +        
Sbjct: 921  RWSHEKQVP*ARAREKRRHTVSTLDEQTNESAR*ENLRIQHDESDRVRDATQRHDRDAPI 1100

Query: 109  -----EAALREIKERV--KKTKDEKRAKKA 131
                 +  +RE  E+    K K+E+R+KK+
Sbjct: 1101 *EAVADETVRETHEKTCRDKRKEERRSKKS 1190


>BQ144083 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
           {Volvox carteri f. nagariensis}, partial (7%)
          Length = 467

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
 Frame = -3

Query: 124 DEKRAKKAEVQTKAQKSQ--GKGGKVAAPKGPKLGGGGGKR 162
           +EK  + AE +++ +K +  GKGG+    K    GGG GK+
Sbjct: 459 EEKNREMAEDRSEGRKEETRGKGGEGGGRKSGGEGGGRGKK 337


>BQ151355 homologue to GP|12620658|gb| ID556 {Bradyrhizobium japonicum},
           partial (4%)
          Length = 1420

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 114 EIKERVKKTKDEKRAKKAEVQTKAQKSQGKG---GKVAAPKGPKLGGGGGK 161
           E + + K+ + EKR  K E  TK QK Q +G   G     K PK  GG G+
Sbjct: 203 ESRGKKKQKRREKRQNKGEKGTK-QKPQNRGPGPGDHPQRKQPKNRGGEGR 352



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 20/84 (23%), Positives = 37/84 (43%)
 Frame = +2

Query: 58  RKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 117
           +KQ +++  Q    K  +  +KP +R   G       +R+  K    +       +   +
Sbjct: 218 KKQKRREKRQNKGEKGTK--QKPQNR---GPGPGDHPQRKQPKNRGGEGRHSPTTKAENQ 382

Query: 118 RVKKTKDEKRAKKAEVQTKAQKSQ 141
              +TKDEKR +K + + K +K Q
Sbjct: 383 EPPRTKDEKRKEKEDKERKEKKKQ 454


>BQ750868 weakly similar to GP|4104436|gb|A acetolactate synthase; oxo-acid
           lyase {Leuconostoc lactis}, partial (7%)
          Length = 494

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/53 (24%), Positives = 26/53 (48%)
 Frame = +1

Query: 49  SKLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKP 101
           ++L W   F  + +  I QEA   + ++T   + R + G + +V +K   + P
Sbjct: 64  NELPWCRRFFIKVRGMICQEAPHSRAQTTALSHGRKVTGQSTQVCRKHPGDSP 222


>BQ135858 similar to GP|23491723|db formin homology protein A {Dictyostelium
           discoideum}, partial (4%)
          Length = 1033

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/35 (45%), Positives = 20/35 (56%)
 Frame = +2

Query: 126 KRAKKAEVQTKAQKSQGKGGKVAAPKGPKLGGGGG 160
           K+ KK   Q K +  + KGG+V  P    LGGGGG
Sbjct: 182 KKKKKPPPQKKKKNLKKKGGEVPPPFF-FLGGGGG 283


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,923,331
Number of Sequences: 36976
Number of extensions: 47594
Number of successful extensions: 444
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of query: 162
length of database: 9,014,727
effective HSP length: 89
effective length of query: 73
effective length of database: 5,723,863
effective search space: 417841999
effective search space used: 417841999
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)


Lotus: description of TM0132.6