TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0131.12
         (78 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC89364 weakly similar to PIR|C96745|C96745 hypothetical protein...    29  0.38
TC79252 MtN21                                                          28  0.85
AW688238 weakly similar to EGAD|60190|6299 putative disease-resi...    28  0.85
TC88679 similar to PIR|A86430|A86430 hypothetical protein AAF197...    26  3.2
TC80854 similar to GP|21595633|gb|AAM66119.1 unknown {Arabidopsi...    26  3.2
TC79584 similar to GP|20197980|gb|AAM15335.1 Expressed protein {...    26  3.2
CA921471                                                               25  4.2
BF644745 similar to PIR|A85231|A85 hypothetical protein AT4g2035...    25  5.5
TC91951 similar to GP|5441893|dbj|BAA82391.1 ESTs C99174(E10437)...    25  7.2
TC87882 homologue to GP|4589852|dbj|BAA76902.1 cycloartenol synt...    25  7.2
TC84535 homologue to GP|11121216|emb|CAC14792. histone H3 {Morti...    24  9.4
TC86836 similar to GP|21553680|gb|AAM62773.1 unknown {Arabidopsi...    24  9.4

>TC89364 weakly similar to PIR|C96745|C96745 hypothetical protein T9N14.3
            [imported] - Arabidopsis thaliana, partial (45%)
          Length = 1903

 Score = 28.9 bits (63), Expect = 0.38
 Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 3/36 (8%)
 Frame = -2

Query: 8    RRLFASLLITNIMNNPDHVWNITWKL---LANDIQH 40
            R L A   I   +NN  H W  +WKL   L  D+QH
Sbjct: 1707 RFLLARFRINKHLNNISHSWTQSWKLSSTLNTDLQH 1600


>TC79252 MtN21
          Length = 1872

 Score = 27.7 bits (60), Expect = 0.85
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
 Frame = +3

Query: 17   TNIMNNPDHVWNITWKLLANDIQHEYRGTLTQ------PGMI-----PTFSLSSKPILLK 65
            T IM N D VW I W +  N +   Y G +T        G++     P F+ S  P+++ 
Sbjct: 942  TLIMENKDSVWTIGWDM--NLLAAAYAGIVTSSISYYIQGLVIKKKGPVFATSFSPLMMI 1115

Query: 66   I 66
            I
Sbjct: 1116 I 1118


>AW688238 weakly similar to EGAD|60190|6299 putative disease-resistance clone
           pH359-3 {Oryza sativa}, partial (18%)
          Length = 690

 Score = 27.7 bits (60), Expect = 0.85
 Identities = 19/58 (32%), Positives = 24/58 (40%), Gaps = 1/58 (1%)
 Frame = -3

Query: 2   HSGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLT-QPGMIPTFSLS 58
           H    LRR+F SL +    N P H + + W          YR   T Q   + TF LS
Sbjct: 343 HLMETLRRIFPSLFVNLQQNVPQHFFYVVWS--------RYRDPYT*QSKFLTTFWLS 194


>TC88679 similar to PIR|A86430|A86430 hypothetical protein AAF19754.1
           [imported] - Arabidopsis thaliana, partial (47%)
          Length = 809

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 9/26 (34%), Positives = 18/26 (68%)
 Frame = -1

Query: 7   LRRLFASLLITNIMNNPDHVWNITWK 32
           L+ L AS+++T  ++ P ++W+  WK
Sbjct: 284 LQILAASVILTAAVHQPHYLWDHVWK 207


>TC80854 similar to GP|21595633|gb|AAM66119.1 unknown {Arabidopsis
           thaliana}, partial (95%)
          Length = 563

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 49  PGMIPTFSLSSKPILLKIDNHLQ 71
           P + P + LS +P+L ++++HL+
Sbjct: 230 PDLSPQYHLSEQPVLEEVEDHLE 162


>TC79584 similar to GP|20197980|gb|AAM15335.1 Expressed protein {Arabidopsis
           thaliana}, partial (78%)
          Length = 866

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 27  WNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPILLKIDNHLQSNGK 75
           W++TW L   +I +  +  L    ++P   LS+K I      H+ S  K
Sbjct: 108 WSLTWNLTFPNIMNGCKTLLFFKPLLPNPFLSNKSIRCNSHGHVISTRK 254


>CA921471 
          Length = 381

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 18  NIMNNPDHVWNITWKL 33
           N+    DH+WN +WKL
Sbjct: 307 NLTQKIDHLWNKSWKL 260


>BF644745 similar to PIR|A85231|A85 hypothetical protein AT4g20350 [imported]
           - Arabidopsis thaliana, partial (52%)
          Length = 684

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 13  SLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIP 53
           +LL+ NI   P       WKLL N     + G + + G++P
Sbjct: 238 TLLLNNIYGAPSS----KWKLLKNRRLQNWGGVVHEKGLLP 348


>TC91951 similar to GP|5441893|dbj|BAA82391.1 ESTs C99174(E10437)
           D22295(C10709) correspond to a region of the predicted
           gene.~Similar to, partial (23%)
          Length = 526

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
 Frame = -2

Query: 9   RLFASLLITNIMNNPD-------HVWNITWKLLANDIQ 39
           RL   LLI N  N+PD       H+  + ++LLA  IQ
Sbjct: 393 RLIIILLINNSSNSPD*QKKKKVHLTKVNFRLLAFAIQ 280


>TC87882 homologue to GP|4589852|dbj|BAA76902.1 cycloartenol synthase
           {Glycyrrhiza glabra}, partial (51%)
          Length = 1408

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 25  HVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
           H+W++ W   A+    E++  L  P  +  F++ + PI
Sbjct: 745 HLWHLVWGKRADCCWEEFQ*LLKHP*SL*LFAVEAAPI 858


>TC84535 homologue to GP|11121216|emb|CAC14792. histone H3 {Mortierella
           alpina}, partial (98%)
          Length = 654

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -3

Query: 11  FASLLITNIMNNPDHVWNITWKLL 34
           F+ LLI +  +  D  W+IT +LL
Sbjct: 217 FSGLLIASNFSKSDGTWSITMRLL 146


>TC86836 similar to GP|21553680|gb|AAM62773.1 unknown {Arabidopsis
           thaliana}, partial (61%)
          Length = 1387

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 45  TLTQPGMIPTFSLSSKPILLKIDNHLQSNGKSLK 78
           TL Q  M P  S+S  P+L   D+    + +SLK
Sbjct: 477 TLKQEQMEPMISVSKFPLLSV*DSRTSQHNRSLK 376


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,959,635
Number of Sequences: 36976
Number of extensions: 40290
Number of successful extensions: 206
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of query: 78
length of database: 9,014,727
effective HSP length: 54
effective length of query: 24
effective length of database: 7,018,023
effective search space: 168432552
effective search space used: 168432552
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)