TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0127a.6
         (105 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC92438 homologue to GP|19698919|gb|AAL91195.1 unknown protein {...    51  6e-08
BG647396 weakly similar to PIR|T50791|T50 hypothetical protein T...    38  5e-04
TC79769 homologue to GP|7158882|gb|AAF37579.1| heat shock transc...    28  0.56
TC85671 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 ...    27  1.6
TC76885 similar to PIR|T52316|T52316 chlorophyll a/b-binding pro...    25  3.6
BI307878 similar to PIR|T05583|T055 CER2 protein - Arabidopsis t...    25  3.6
BF635332 weakly similar to PIR|D96653|D966 hypothetical protein ...    25  6.1
TC88362 similar to GP|19912147|dbj|BAB88385. autophagy 7 {Arabid...    25  6.1
TC91424 weakly similar to PIR|D96653|D96653 hypothetical protein...    25  6.1
CA919950 weakly similar to GP|8777580|dbj| gene_id:F1D9.26~unkno...    25  6.1
BQ143927                                                               25  6.1
BQ751190 homologue to PIR|A72706|A727 hypothetical protein APE10...    24  8.0
TC76937 homologue to GP|16323113|gb|AAL15291.1 AT5g28840/F7P1_20...    24  8.0

>TC92438 homologue to GP|19698919|gb|AAL91195.1 unknown protein {Arabidopsis
           thaliana}, partial (28%)
          Length = 695

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 25/68 (36%), Positives = 39/68 (56%)
 Frame = +2

Query: 3   YWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHR 62
           Y+VQG      LAVSF+LKD L++ P+   ++   +  P +  PLY  +SDS+ + G  R
Sbjct: 251 YFVQGVLGLARLAVSFYLKDDLHLDPAEAAVISGISAFPWLVKPLYGFISDSIPLFGYRR 430

Query: 63  VPYIAIGG 70
             Y+ + G
Sbjct: 431 RSYLVLSG 454


>BG647396 weakly similar to PIR|T50791|T50 hypothetical protein T30N20_90 -
           Arabidopsis thaliana, partial (38%)
          Length = 787

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 17/57 (29%), Positives = 30/57 (51%)
 Frame = +3

Query: 14  LAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIAIGG 70
           L   ++ KD   + PST+QL      +P +  P++ +++D+  I G  R PY  + G
Sbjct: 186 LVTDYYWKDVQKLQPSTVQLYVGIYFIPWILKPIWGILTDAFPILGYRRRPYFVVAG 356


>TC79769 homologue to GP|7158882|gb|AAF37579.1| heat shock transcription
           factor {Medicago sativa}, complete
          Length = 1979

 Score = 28.1 bits (61), Expect = 0.56
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 32  QLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIAIGGN**FIVIVCMIMKYE 85
           +L++N+ NLPM+           ++  G H +  I I G+  FIVI+C+I K++
Sbjct: 863 KLIRNNGNLPMM-----------IF*GGNHIL*RIFIDGSR-FIVILCIIFKHK 988


>TC85671 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1).
            [Apricot] {Prunus armeniaca}, complete
          Length = 1508

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 17/47 (36%), Positives = 24/47 (50%)
 Frame = -1

Query: 17   SFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRV 63
            SFFL+DGL +    L L  N  +L     PL ++   S+ I  QH +
Sbjct: 1169 SFFLRDGLPLLIELLLLRLNPLSLSKQSHPLSSL---SIRIKPQHNI 1038


>TC76885 similar to PIR|T52316|T52316 chlorophyll a/b-binding protein CP29
           [imported] - Arabidopsis thaliana, partial (80%)
          Length = 1189

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (46%)
 Frame = -2

Query: 10  CFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVV 51
           CF     SFFL  G N+ P    +L+ +  LPM    L  +V
Sbjct: 273 CFLTFFTSFFLGAGFNLVP----MLKKARTLPMFEVGLQRLV 160


>BI307878 similar to PIR|T05583|T055 CER2 protein - Arabidopsis thaliana,
          partial (10%)
          Length = 649

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 29 STLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRV 63
          STL+  QN  +L  + TP+YA++    ++SG+ R+
Sbjct: 4  STLKSCQN-LSLSDLKTPIYALLESCSHVSGRIRI 105


>BF635332 weakly similar to PIR|D96653|D966 hypothetical protein F16P17.3
           [imported] - Arabidopsis thaliana, partial (76%)
          Length = 603

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 2   GYWVQGFRCFPWLAVSFFL 20
           G+W+  F C P+L  +F L
Sbjct: 112 GHWIMSFFCLPYLYFNFRL 168


>TC88362 similar to GP|19912147|dbj|BAB88385. autophagy 7 {Arabidopsis
           thaliana}, partial (49%)
          Length = 1399

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 24  LNVAPSTLQLLQNSANLP 41
           L+VAP TL L+  SAN+P
Sbjct: 914 LSVAPVTLLLISASANIP 861


>TC91424 weakly similar to PIR|D96653|D96653 hypothetical protein F16P17.3
          [imported] - Arabidopsis thaliana, partial (50%)
          Length = 594

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 2  GYWVQGFRCFPWLAVSFFL 20
          G+W+  F C P+L  +F L
Sbjct: 15 GHWIMSFFCLPYLYFNFRL 71


>CA919950 weakly similar to GP|8777580|dbj| gene_id:F1D9.26~unknown protein
           {Arabidopsis thaliana}, partial (16%)
          Length = 170

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -3

Query: 1   LGYWVQGFRCFPWLAVSFFLKDGL 24
           LG+W + +  F    + FFLK GL
Sbjct: 123 LGFWKKNYFFFSGKKIFFFLKKGL 52


>BQ143927 
          Length = 691

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (67%), Gaps = 1/19 (5%)
 Frame = +2

Query: 2   GYWVQGFRCFPW-LAVSFF 19
           G  ++GFRC PW L V FF
Sbjct: 227 GEKIKGFRCSPWGLRVLFF 283


>BQ751190 homologue to PIR|A72706|A727 hypothetical protein APE1064 -
           Aeropyrum pernix (strain K1), partial (4%)
          Length = 808

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 3   YWVQGFRCFPWLAVSFFLKDGLNVAPSTL 31
           +++ G RCF W AV+  L   LN+A   L
Sbjct: 577 FFLVGLRCFGWFAVNIHLV-MLNIAVGLL 494


>TC76937 homologue to GP|16323113|gb|AAL15291.1 AT5g28840/F7P1_20 {Arabidopsis
            thaliana}, complete
          Length = 1746

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 20   LKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIAIGGN**FIVIVC 79
            +K G N  PST  +   S +    G  L    S  V +SG+    Y ++ G+  +++IVC
Sbjct: 1309 IKSGFN--PSTSPIRLTSGS*RQRGE*LIHGSSSQVNVSGEECALYCSLIGSMSWLLIVC 1482

Query: 80   MI 81
             +
Sbjct: 1483 TL 1488


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.355    0.161    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,289,059
Number of Sequences: 36976
Number of extensions: 36296
Number of successful extensions: 507
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of query: 105
length of database: 9,014,727
effective HSP length: 81
effective length of query: 24
effective length of database: 6,019,671
effective search space: 144472104
effective search space used: 144472104
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 50 (23.9 bits)