TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0126.7
         (542 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...    58  1e-08
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...    58  1e-08
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    57  2e-08
TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Gl...    28  6.9

>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
           alternata}, partial (21%)
          Length = 1540

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
 Frame = +1

Query: 180 GLMGDYSELFST--IWDLPPSR-VQDHAIHL---QEG--AAIPNIRPYRCPHYQKSEIEK 231
           G++ ++ +LF+    + +P SR + DHAI L   ++G    +P    Y     +   ++K
Sbjct: 340 GVLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKK 519

Query: 232 LVKEMLDVGIFRPSISQFSSLVILVKKKDGSWRFCIDYRAFHKITIPNKFPILIIDELLY 291
            ++++LD G  + S S   + V+ V+K  G  RFC+DYRA + IT  +++P+ +I E L 
Sbjct: 520 TLEDLLDKGFIKASGSAAGAPVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLR 699

Query: 292 KLGEAK 297
           ++  A+
Sbjct: 700 RVAGAR 717


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
 Frame = +2

Query: 195 LPPSRVQDHAIHLQEGAAIPNIRPYRCPHYQ----KSEIEKL-VKEMLDVGIFRPSISQF 249
           +PP    D  I L     +PN+ P   P Y+    K ++ KL +K++L+ G  +PSI   
Sbjct: 17  VPPEWKIDFGIDL-----LPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP* 181

Query: 250 SSLVILVKKKDGSWRFCIDYRAFHKITIPNKFPILIIDELLYKLGEAK 297
             +V+ +KKKDG  R  IDY   + + I  K+P+ +IDEL   L  +K
Sbjct: 182 GVVVLFLKKKDGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSK 325


>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%)
 Frame = -1

Query: 243 RPSISQFSSLVILVKKKDGSWRFCIDYRAFHKITIPNKFPILIIDELLYKLGE 295
           +PSIS   + ++ V+KKDG +R CIDYR F+K+T  NK+P+  ID L  K+ E
Sbjct: 262 QPSISP*GAALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFDKIQE 104


>TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Glycine max},
           partial (70%)
          Length = 738

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -1

Query: 88  FFLFNLGGLDVVLGL*WFASLGHIR 112
           F LF L GLD  LGL WF  LG  R
Sbjct: 357 FGLFRLFGLDGFLGLFWFFRLGRWR 283


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.349    0.158    0.543 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,614,158
Number of Sequences: 36976
Number of extensions: 248754
Number of successful extensions: 1754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 1349
length of query: 542
length of database: 9,014,727
effective HSP length: 101
effective length of query: 441
effective length of database: 5,280,151
effective search space: 2328546591
effective search space used: 2328546591
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 61 (28.1 bits)