BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0126.13
(168 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG457163 weakly similar to GP|16648695|gb| AT4g12340/T4C9_180 {A... 238 1e-63
CA922285 similar to GP|11094252|dbj PEX14 {Arabidopsis thaliana}... 33 0.041
TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Gl... 32 0.12
TC91597 similar to GP|21323350|dbj|BAB97978. Hypothetical protei... 32 0.16
BQ141661 weakly similar to GP|10177181|dbj gene_id:K19E20.3~unkn... 31 0.27
TC83133 similar to PIR|T06033|T06033 hypothetical protein T28I19... 29 0.78
TC79049 weakly similar to PIR|T10798|T10798 pherophorin-S - Volv... 29 1.0
TC86029 homologue to GP|5802244|gb|AAD51625.1| seed maturation p... 28 1.7
TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 28 1.7
BG449394 similar to PIR|A83006|A830 hypothetical protein PA5121 ... 28 2.3
BG457880 weakly similar to GP|1063689|gb|A ORF 66; this sequence... 28 2.3
TC86877 similar to GP|8953376|emb|CAB96649.1 putative protein {A... 27 3.0
TC85763 similar to GP|12083298|gb|AAG48808.1 unknown protein {Ar... 27 3.0
CA923067 weakly similar to PIR|T10736|T10 cinnamyl-alcohol dehyd... 27 3.0
TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (... 27 3.0
AJ499725 similar to PIR|T47993|T4 hypothetical protein F21F14.18... 27 3.0
TC83868 27 3.9
TC76440 weakly similar to SP|Q9LD55|IF3A_ARATH Eukaryotic transl... 27 3.9
TC88185 homologue to PIR|T09368|T09368 GTP-binding protein F23K1... 27 3.9
TC81541 similar to GP|22597168|gb|AAN03471.1 unknown protein {Gl... 27 3.9
>BG457163 weakly similar to GP|16648695|gb| AT4g12340/T4C9_180 {Arabidopsis
thaliana}, partial (28%)
Length = 641
Score = 238 bits (606), Expect = 1e-63
Identities = 116/163 (71%), Positives = 135/163 (82%)
Frame = +3
Query: 1 MGEFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQS 60
MGEFTIQISN+LVN+LVDDPV KKK RR +RKVA+E EKPQ V + E A AP WPVQ
Sbjct: 132 MGEFTIQISNDLVNKLVDDPVVKKKPRRVKRKVAREIEKPQPNVAEEAEIAPAPVWPVQP 311
Query: 61 PLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLP 120
L++PA P P+ E++GIRSVL+ESEKVLE LQKQE+ MLQEVTQKAKDLH+KEYK+P
Sbjct: 312 ALYVPATLPAHPSQSELEGIRSVLQESEKVLERLQKQEKQMLQEVTQKAKDLHEKEYKVP 491
Query: 121 NPKPEPCIAERLATLSCYKEHIKDPLKCSAFVTNFAGCLRKFG 163
+PKPE C AERLA+L+CYKEHIKDPLKC+ FV NFA CLR+ G
Sbjct: 492 DPKPERCTAERLASLTCYKEHIKDPLKCAGFVNNFADCLRRLG 620
>CA922285 similar to GP|11094252|dbj PEX14 {Arabidopsis thaliana}, partial
(4%)
Length = 753
Score = 33.5 bits (75), Expect = 0.041
Identities = 27/105 (25%), Positives = 48/105 (45%)
Frame = -1
Query: 18 DDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEI 77
DDP P + + R + E E G P +A+ P+Q P PP+ A
Sbjct: 573 DDPTPWWQKKNVRIREIDEIE-----YNGAPNGSASSQQPLQRVWVPPQPPPIAMA---- 421
Query: 78 DGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNP 122
G +R + +++QK++ + Q V Q + D+ + E+++P P
Sbjct: 420 -GAAEAIRRPK---QAVQKEQASDNQSVVQ-SSDISNGEHEIPKP 301
>TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Glycine max},
partial (70%)
Length = 738
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/107 (26%), Positives = 40/107 (37%)
Frame = +1
Query: 20 PVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEIDG 79
P PK K ++ K E + K KP+N P P + K P +P +PE
Sbjct: 286 PPPKPKEPEKPKEPVKPKEPEKPKEPEKPKNPEKPKEPEK------PKEPEKPKEPEKP- 444
Query: 80 IRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKPEP 126
+E EK E E ++ + +K P P PEP
Sbjct: 445 -----KEPEKPKEKPAPPPPEPKPEPPKQPEKPKEKPAPPPQPMPEP 570
>TC91597 similar to GP|21323350|dbj|BAB97978. Hypothetical protein
{Corynebacterium glutamicum ATCC 13032}, partial (5%)
Length = 718
Score = 31.6 bits (70), Expect = 0.16
Identities = 27/109 (24%), Positives = 44/109 (39%), Gaps = 2/109 (1%)
Frame = +2
Query: 18 DDPVPKKKIRRNRRKVAKETEKPQSKVTGKP--ENAAAPGWPVQSPLFLPAKPPVQPADP 75
+ P+ K ++ R + K+ +KP K KP E A L P K PV+ D
Sbjct: 395 EKPIKKPAKKQEDRPIEKQEKKPVEKHEKKPVEEPIAKSEKKSAEKLEKPIKKPVEKQDH 574
Query: 76 EIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKP 124
S++KQE+N ++E + + H+K+ KP
Sbjct: 575 R----------------SVEKQEKNPVEEHEKTPVEKHEKKPAETQEKP 673
>BQ141661 weakly similar to GP|10177181|dbj gene_id:K19E20.3~unknown protein
{Arabidopsis thaliana}, partial (14%)
Length = 914
Score = 30.8 bits (68), Expect = 0.27
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 57 PVQSPLFLPAKPPVQPADPEID 78
P SPLF P +PP+ P P++D
Sbjct: 699 PAPSPLFPPLRPPLTPIPPDLD 764
>TC83133 similar to PIR|T06033|T06033 hypothetical protein T28I19.140 -
Arabidopsis thaliana, partial (16%)
Length = 906
Score = 29.3 bits (64), Expect = 0.78
Identities = 16/67 (23%), Positives = 31/67 (45%)
Frame = +3
Query: 66 AKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKPE 125
A+ P +P E+D + + E + + +QKQ L + + + K + Y +
Sbjct: 249 AEEPRKPTKEELDYLELRQKLKESIRKKMQKQNSTSLADSSGRKKQIQRDNYGSFFGPSQ 428
Query: 126 PCIAERL 132
P IA+R+
Sbjct: 429 PVIAQRV 449
>TC79049 weakly similar to PIR|T10798|T10798 pherophorin-S - Volvox carteri,
partial (6%)
Length = 957
Score = 28.9 bits (63), Expect = 1.0
Identities = 27/106 (25%), Positives = 42/106 (39%)
Frame = -3
Query: 13 VNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQP 72
V +LV + KK++ K+ EK + K V+ L + +
Sbjct: 871 VEELVKEVEGLKKVKAESEARVKDLEKRIGVLEMKEIEERNKRIRVEEEL----RDTIGE 704
Query: 73 ADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYK 118
D EIDG R+ + E EKV + + + L E K L + E K
Sbjct: 703 KDREIDGFRNKVEELEKVGAEKKDEAGDWLNEKLSYEKALRESEEK 566
>TC86029 homologue to GP|5802244|gb|AAD51625.1| seed maturation protein PM37
{Glycine max}, complete
Length = 1572
Score = 28.1 bits (61), Expect = 1.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 64 LPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLP 120
LPAKP Q D EID E L + +EEN ++ Q+ ++ +D++ +P
Sbjct: 1153 LPAKPSSQLTDMEIDEC------EETTLHDVNMEEENRRKQ-QQQQQEAYDEDDDMP 1302
>TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (19%)
Length = 555
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 40 PQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADP 75
P G P AP P P PA PP+ P+ P
Sbjct: 214 PAPPSPGSPPKPPAPPSPGSPPAPAPAPPPIPPSPP 321
>BG449394 similar to PIR|A83006|A830 hypothetical protein PA5121 [imported] -
Pseudomonas aeruginosa (strain PAO1), partial (1%)
Length = 684
Score = 27.7 bits (60), Expect = 2.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 19 DPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWP 57
DP+ K R +++ K+T++ + + GKPE G P
Sbjct: 190 DPLDALKAREQAKELKKKTKEAEKENKGKPETKPKGGAP 306
>BG457880 weakly similar to GP|1063689|gb|A ORF 66; this sequence overlaps at
the HindIII site with the sequence reported for the
OpMNPV lef-3, partial (5%)
Length = 669
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 48 PENAAAPGWPVQSPLFLPAKPPVQPADPE 76
P A P PVQSP A+PP QP+ P+
Sbjct: 306 PAQVAQPVQPVQSPHMQHAQPP-QPSQPQ 389
>TC86877 similar to GP|8953376|emb|CAB96649.1 putative protein {Arabidopsis
thaliana}, partial (12%)
Length = 1558
Score = 27.3 bits (59), Expect = 3.0
Identities = 16/56 (28%), Positives = 31/56 (54%)
Frame = +2
Query: 80 IRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKPEPCIAERLATL 135
+ + S+ +ESL+K+ E+ ++ +TQK +++ D + K+ I ERL L
Sbjct: 1199 VEAAKANSDSEMESLRKELESKVEILTQKEREVTDIKTKIEG------IRERLGEL 1348
>TC85763 similar to GP|12083298|gb|AAG48808.1 unknown protein {Arabidopsis
thaliana}, partial (93%)
Length = 1207
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = -1
Query: 56 WPVQSPLFLPAKPPVQPADPEIDGIRSVLRE 86
W V S LP PP+QP P + +R V E
Sbjct: 217 WAVHS---LPKSPPIQPVRPYMRNLRGVSEE 134
>CA923067 weakly similar to PIR|T10736|T10 cinnamyl-alcohol dehydrogenase (EC
1.1.1.195) - cider tree, partial (39%)
Length = 712
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 35 KETEKPQSKVTGKPENAAAPGWPVQSPLF 63
+ET+ +SK+ G +AA+PG+ + PLF
Sbjct: 147 EETQNNRSKLKG*GGSAASPGYKLAPPLF 233
>TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (22%)
Length = 1278
Score = 27.3 bits (59), Expect = 3.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 85 RESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKPEPCIAERLAT---LSCYKE 140
R +EKV L ++ QE+ A+DLH E+K P P A++ +T + C+ E
Sbjct: 955 RAAEKVFPPLDFSQQPPAQELI--ARDLHGNEWKFQTYLPRP--AQKTSTYNWMECFCE 1119
>AJ499725 similar to PIR|T47993|T4 hypothetical protein F21F14.180 -
Arabidopsis thaliana, partial (12%)
Length = 510
Score = 27.3 bits (59), Expect = 3.0
Identities = 19/51 (37%), Positives = 24/51 (46%)
Frame = -1
Query: 34 AKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEIDGIRSVL 84
AK P+ +V G P PG+PV A+P IDGIRSV+
Sbjct: 132 AKNPSLPE-RVDGAPNFRKVPGFPVFGV-----------ANPTIDGIRSVI 16
>TC83868
Length = 828
Score = 26.9 bits (58), Expect = 3.9
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 10/118 (8%)
Frame = +3
Query: 23 KKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWP-VQSPLFLPAKPPVQPADPEIDGIR 81
K I + +K+ + + P+ ++ PEN P V+ +L +I+ +
Sbjct: 75 KMGIDDHHKKMPSKRDLPEGEMVDVPENKKVKMDPEVEKDAYLK----------QIEALN 224
Query: 82 SVLRESEKVLESLQKQEENMLQEVTQK---------AKDLHDKEYKLPNPKPEPCIAE 130
L+ESE +ESL++Q +V KD H KE + N + + AE
Sbjct: 225 QRLKESELEIESLREQLRKKDLQVDDSKEVKVDHEIEKDAHLKEIEALNQRLKESEAE 398
>TC76440 weakly similar to SP|Q9LD55|IF3A_ARATH Eukaryotic translation
initiation factor 3 subunit 10 (eIF-3 theta), partial
(41%)
Length = 1953
Score = 26.9 bits (58), Expect = 3.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 19 DPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADP 75
D + +K+ +R R K + + + G+P P P +PPV+P DP
Sbjct: 1219 DEIAEKQKQRLREIEEKAEREKREALLGRPAE----------PALRPYEPPVRPVDP 1359
>TC88185 homologue to PIR|T09368|T09368 GTP-binding protein F23K16.150 -
Arabidopsis thaliana, complete
Length = 1734
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 60 SPLFLPAKPPVQPADPEIDGIRSVLR 85
SPL + +KP P P + G+RS LR
Sbjct: 340 SPLLVTSKPSPAPPPPLVVGVRSSLR 263
>TC81541 similar to GP|22597168|gb|AAN03471.1 unknown protein {Glycine max},
partial (36%)
Length = 927
Score = 26.9 bits (58), Expect = 3.9
Identities = 20/73 (27%), Positives = 30/73 (40%), Gaps = 25/73 (34%)
Frame = +3
Query: 22 PKKKIRRNRRKVAKETEKPQS-------------KVTGKPENAAAP------------GW 56
P+KK ++ K AKE EKP++ K + KP++A P
Sbjct: 630 PEKKKEGDKPKPAKEAEKPKAADPEKKVTFVSVVKDSDKPKDAEKPKPKPEAEKPKDKPA 809
Query: 57 PVQSPLFLPAKPP 69
P P+ +P PP
Sbjct: 810 PTAMPMMIPQMPP 848
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,706,874
Number of Sequences: 36976
Number of extensions: 60011
Number of successful extensions: 390
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of query: 168
length of database: 9,014,727
effective HSP length: 89
effective length of query: 79
effective length of database: 5,723,863
effective search space: 452185177
effective search space used: 452185177
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0126.13