Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0125.16
         (229 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d...    33  0.12
TC77148 ENOD20                                                         32  0.20
TC80891 similar to GP|21622328|emb|CAD36969. probable isoamyl al...    31  0.34
BQ141734 homologue to PIR|T49109|T491 glycine-rich protein - Ara...    31  0.45
TC89100 similar to GP|21553849|gb|AAM62942.1 putative RING zinc ...    30  0.77
AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapi...    30  1.0
TC79555 homologue to GP|10567859|gb|AAG18593.1 L8019.5 {Leishman...    29  1.3
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ...    29  1.7
CB891518 similar to GP|12643044|gb putative AT-Hook DNA-binding ...    28  2.2
TC89939 similar to GP|15289911|dbj|BAB63606. hypothetical protei...    28  2.2
TC79235 weakly similar to GP|7297741|gb|AAF52992.1| CG17108 gene...    28  2.2
CB894389 similar to SP|P27879|HS11_ 18.1 kDa class I heat shock ...    28  2.2
TC79359 weakly similar to PIR|S49915|S49915 extensin-like protei...    28  2.2
TC84806 similar to GP|13676415|dbj|BAB41198. hypothetical protei...    28  2.2
BQ750979 similar to GP|13883467|gb PE_PGRS family protein {Mycob...    28  2.9
TC90148 similar to GP|6403503|gb|AAF07843.1| putative DnaJ prote...    28  2.9
BG456045                                                               28  2.9
TC88788 weakly similar to SP|P05790|FBOH_BOMMO Fibroin heavy cha...    28  2.9
BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xy...    28  2.9
TC90933 similar to SP|P27484|GRP2_NICSY Glycine-rich protein 2. ...    28  2.9

>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
           HD2-P39 {Glycine max}, partial (47%)
          Length = 1233

 Score = 32.7 bits (73), Expect = 0.12
 Identities = 33/130 (25%), Positives = 56/130 (42%), Gaps = 4/130 (3%)
 Frame = +2

Query: 103 DEEDPSEIEADVDAPVAPLPATAVDLTDV----ASSSRLVEPKREPVVPSASRRFSFTPS 158
           ++ D SE E + D+    +P    +        A   ++ EPK+     +A  + + T  
Sbjct: 365 EDNDDSEEEGETDSEDEDIPLITTEQNGKPEPKAEELKVSEPKKADAKNAAPAKNAATAK 544

Query: 159 RGYRVELLVRVVEEDVLSEEVDVEMGSTRVVRRIVRKEVMDLDTEMITVDSDSDTDVDNY 218
               V+++    E+    +E D E+GS+              D EM   DSDS+ + D  
Sbjct: 545 H---VKVVDPKDEDSDDDDESDDEIGSS--------------DDEMENADSDSEDEDD-- 667

Query: 219 SPSDEEEEEE 228
             SDE++EEE
Sbjct: 668 --SDEDDEEE 691


>TC77148 ENOD20
          Length = 1108

 Score = 32.0 bits (71), Expect = 0.20
 Identities = 22/68 (32%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
 Frame = +3

Query: 94  PPSPPSSSSDEEDPSEIEADVDAPVAPLPATAVDLTDVAS--SSRLVEP-KREPVVPSAS 150
           PPSPP+  S    P      + +P +P P+ +   +   S  S+ +  P KR P  PS S
Sbjct: 435 PPSPPTPRSSTPIPHPPRRSLPSPPSPSPSPSPSPSPSPSPRSTPIPHPRKRSPASPSPS 614

Query: 151 RRFSFTPS 158
              S +PS
Sbjct: 615 PSLSKSPS 638


>TC80891 similar to GP|21622328|emb|CAD36969. probable isoamyl alcohol
           oxidase {Neurospora crassa}, partial (12%)
          Length = 766

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 24/76 (31%), Positives = 31/76 (40%)
 Frame = +1

Query: 82  PSVRCGPGTGRGPPSPPSSSSDEEDPSEIEADVDAPVAPLPATAVDLTDVASSSRLVEPK 141
           P+   GP    GPPS P S++    PS        P AP   TA     +A  +R   P+
Sbjct: 352 PATPAGPPRPSGPPSTPPSAAVSSPPS--------PSAPSATTA----PLAPLTRQSAPR 495

Query: 142 REPVVPSASRRFSFTP 157
             P  P+  R  S  P
Sbjct: 496 SRPRGPAPRRTSSRRP 543


>BQ141734 homologue to PIR|T49109|T491 glycine-rich protein - Arabidopsis
           thaliana, partial (4%)
          Length = 1181

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = -3

Query: 81  PPSVRCGPGTGRGPPSPPSSSSDEEDPSEIE 111
           P   +C   TGRGP  PP  ++ +  P  IE
Sbjct: 240 PSDNKCSDATGRGPSHPPRPAASDRGPHGIE 148


>TC89100 similar to GP|21553849|gb|AAM62942.1 putative RING zinc finger
           protein {Arabidopsis thaliana}, partial (44%)
          Length = 1047

 Score = 30.0 bits (66), Expect = 0.77
 Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
 Frame = -2

Query: 91  GRGPPSPPSSSSDEEDPS-EIEADVDAPVAPLPATAVDL 128
           G  PP+PP    +E+ P+  +   ++ P++P+PA    L
Sbjct: 752 GINPPNPPKPGENEKFPNLAVAVGINPPISPIPAVKFPL 636


>AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapiens},
           partial (2%)
          Length = 466

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 33/133 (24%), Positives = 48/133 (35%)
 Frame = +1

Query: 96  SPPSSSSDEEDPSEIEADVDAPVAPLPATAVDLTDVASSSRLVEPKREPVVPSASRRFSF 155
           S  SSSSD +  SE EA     V  +  TA      ASS   V+   +    S+S   + 
Sbjct: 28  SSSSSSSDSDSDSESEAPAKKAVPVVTKTAPTHAKSASSKMEVDSDSDSDSDSSSSSSTS 207

Query: 156 TPSRGYRVELLVRVVEEDVLSEEVDVEMGSTRVVRRIVRKEVMDLDTEMITVDSDSDTDV 215
           +     +   +          EE D +  S                +   +  S S +  
Sbjct: 208 SSVSSVKKPAVSAAKATPAKKEESDSDSDSDS------SSSSSSSSSSSSSSSSSSSSSS 369

Query: 216 DNYSPSDEEEEEE 228
            + S SD+EEEEE
Sbjct: 370 SSSSNSDDEEEEE 408


>TC79555 homologue to GP|10567859|gb|AAG18593.1 L8019.5 {Leishmania major},
            partial (1%)
          Length = 1410

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = +2

Query: 64   GRLTRGVLRRMELSFNLPPSVRCGPGTGRGPPSPPSSSSDEEDPSEIEADVDAPVAPLPA 123
            GRL          + N PP     P +   P  PP+S S    P+ + +    P +  P 
Sbjct: 1061 GRLPAATTSSPATNANSPPFPPASPSSSVPPAKPPTSKS-ARSPAPV*SRPSPPPSSSPG 1237

Query: 124  TAVDLTDVASSSRLVEPKREPVVPSASRRFSFTPS 158
            +A      ++SSR     R     + SRR   T S
Sbjct: 1238 SA-----ASASSRCSASSRARPTSAGSRRTRTTAS 1327


>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
           partial (69%)
          Length = 1615

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 94  PPSPPSSSSDEEDPSEIEADVDAPVAPLPATAVDLTDVASS 134
           P   P+SSSDEE   E + D DA     PA     +   SS
Sbjct: 144 PQRKPASSSDEESDEESDEDEDAKPVSKPAAVAKKSKKDSS 266


>CB891518 similar to GP|12643044|gb putative AT-Hook DNA-binding protein
           {Oryza sativa}, partial (27%)
          Length = 691

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = -3

Query: 62  ERGRLTRGVLRRMELSFNL---PPSVRCGPGTGRGPPSPPSSSSDEEDPSEIEADVDAPV 118
           ER +  RG +    ++F++   P S +   G    PP+P +S+    +P  +        
Sbjct: 494 ERIQTVRGPV*EKAITFSVMSSPDSTKITCGVNPVPPAPSASNCFFPEPGGLPLCFLGGA 315

Query: 119 APLPATAVDLTDVASSSRLVEPKREPVVPS 148
           +  P +  +  DVA++      K   ++PS
Sbjct: 314 SAFPESPAEAADVAATGEETGAKPRAMLPS 225


>TC89939 similar to GP|15289911|dbj|BAB63606. hypothetical protein~similar
           to Arabidopsis thaliana chromosome 1  F18O14.3, partial
           (23%)
          Length = 978

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 84  VRCGPGTGRGPPSPP-SSSSDEEDPSEIEADVDAPVAPLP 122
           V  G  T R PPSPP SS+++  D    E ++   +A  P
Sbjct: 59  VGLGESTSRSPPSPPYSSNNNNSDAGNFECNICFDLAQDP 178


>TC79235 weakly similar to GP|7297741|gb|AAF52992.1| CG17108 gene product
           {Drosophila melanogaster}, partial (21%)
          Length = 648

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 81  PPSVRCGPGTGRGPPSPPSSSSDEEDPSEIEADVDAPVAPL 121
           PP +  GP  G GPP PP   S    P     D  AP  P+
Sbjct: 494 PPIMGRGPPLGPGPPPPPMPHSHHPPPPH---DPFAPPPPV 381


>CB894389 similar to SP|P27879|HS11_ 18.1 kDa class I heat shock protein
           (Fragment). [Alfalfa] {Medicago sativa}, partial (41%)
          Length = 189

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 87  GPGTGRGPPSPPSSSSDEEDP 107
           GP   R PPSPP SS  E+ P
Sbjct: 169 GPYHRRSPPSPPPSSVQEDQP 107


>TC79359 weakly similar to PIR|S49915|S49915 extensin-like protein - maize,
           partial (3%)
          Length = 1170

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 22/60 (36%), Positives = 26/60 (42%), Gaps = 5/60 (8%)
 Frame = +3

Query: 81  PPSVRCGPGTGRGPPSPPSSSSDEED-----PSEIEADVDAPVAPLPATAVDLTDVASSS 135
           PP+    P +   P   PS SS  E      PS      DAP A LP++    T  ASSS
Sbjct: 507 PPTAAVSPVSS--PVEAPSVSSPPEASSAGIPSSSATPADAPAATLPSSKSPGTSPASSS 680


>TC84806 similar to GP|13676415|dbj|BAB41198. hypothetical protein {Glycine
           max}, partial (10%)
          Length = 803

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 199 DLDTEMITVDSDSDTDVDNYSPSDEE 224
           DLD  M++  SD+  +VD  SPSD E
Sbjct: 402 DLDKNMVSFTSDNQQEVDVKSPSDLE 479


>BQ750979 similar to GP|13883467|gb PE_PGRS family protein {Mycobacterium
           tuberculosis CDC1551}, partial (1%)
          Length = 728

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 20/67 (29%), Positives = 24/67 (34%), Gaps = 8/67 (11%)
 Frame = +3

Query: 94  PPSPPSSSSDEEDPSEIEADVDAPVAPLPATAVDLTDVASSSRLV--------EPKREPV 145
           PPSPPS       P        A  AP PA A     +     ++        E  R  V
Sbjct: 66  PPSPPSPPQQPTMPPRRSGRTAAAAAPAPAPAPAAPSLPLKGCIICHQWHVRPEAHRHRV 245

Query: 146 VPSASRR 152
           VP  +RR
Sbjct: 246 VPGLTRR 266


>TC90148 similar to GP|6403503|gb|AAF07843.1| putative DnaJ protein
           {Arabidopsis thaliana}, partial (36%)
          Length = 894

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = -1

Query: 95  PSPPSSSSDEEDPSEIEADVDAPVAPLP 122
           P+P    S E  P E E D++ P +PLP
Sbjct: 519 PNPKEFESPEPPPKEKENDLEPPWSPLP 436


>BG456045 
          Length = 656

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 19/65 (29%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67  TRGVLRRMELSFNLPPSVRCG--PGTGRGPPSPPSSSSDEEDPSEIEADVDAPVAPLPAT 124
           T   +RRM    +   ++R    PG G  P SPP+S +    PS  +A +    +  P+ 
Sbjct: 118 TTPFVRRMSFGTSNMRNIRPNGSPGNGNSPSSPPTSQNGRPVPSGRKASLVGSPSQGPSL 297

Query: 125 AVDLT 129
           A  L+
Sbjct: 298 AAVLS 312


>TC88788 weakly similar to SP|P05790|FBOH_BOMMO Fibroin heavy chain
           precursor (Fib-H) (H-fibroin). [Silk moth] {Bombyx
           mori}, partial (2%)
          Length = 782

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 22/76 (28%), Positives = 28/76 (35%), Gaps = 5/76 (6%)
 Frame = -2

Query: 82  PSVRCGPGTGRGPPSPPSSSSDEEDPS-----EIEADVDAPVAPLPATAVDLTDVASSSR 136
           P+    P   R P   P+S    EDP      E+EA+ D    P PA         S S 
Sbjct: 373 PAPDPAPDPARDPAWEPASEPAPEDPDPDPDPEVEAEPDPEPDPAPAPEPAPPPPPSPSP 194

Query: 137 LVEPKREPVVPSASRR 152
              P   P  P ++ R
Sbjct: 193 KPAPNPIPTPPKSNPR 146


>BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xylostella
           granulovirus}, partial (42%)
          Length = 909

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
 Frame = +1

Query: 81  PPSVRCGPGTGRGPPSPPSSSSDEEDPSEIEADVDAPVAP-LPATAVDLTDVASSSRLVE 139
           PP     P   + PP PP     E+ P   E     P  P  P  A   T     +R   
Sbjct: 229 PPHTPPDPTPPQPPPQPPKPPHHEKRPRTPEPPGGRPPPPTTPKQARPTTQERGGARGAR 408

Query: 140 PKREPVVPSAS 150
           P+  P  P  +
Sbjct: 409 PRPPPAPPQGT 441



 Score = 27.3 bits (59), Expect = 5.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 81  PPSVRCGPGTGRGPPSPPSSSSDEE 105
           PP+ R G G  RG P+PP      E
Sbjct: 607 PPTPRPGGGGARGAPAPPPQKKQRE 681


>TC90933 similar to SP|P27484|GRP2_NICSY Glycine-rich protein 2. [Wood
           tobacco] {Nicotiana sylvestris}, partial (44%)
          Length = 368

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (49%)
 Frame = -2

Query: 95  PSPPSSSSDEEDPSEIEADVDAPVAPLPATAVDLTDVASS 134
           P PP S      P  ++   +AP  P+  TA+DL  ++ S
Sbjct: 343 PPPPRS*PPPPPPPRLDP*TEAPSGPVTLTALDLPSLSDS 224


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,030,771
Number of Sequences: 36976
Number of extensions: 86094
Number of successful extensions: 802
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of query: 229
length of database: 9,014,727
effective HSP length: 93
effective length of query: 136
effective length of database: 5,575,959
effective search space: 758330424
effective search space used: 758330424
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)


Lotus: description of TM0125.16