TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0121b.6
         (378 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM814840 weakly similar to GP|15128241|db helicase-like protein ...   121  4e-28
TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein...    75  4e-14
CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    64  7e-11
TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG282...    37  0.013
TC80146                                                                36  0.028
CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    33  0.14
BE205322 similar to PIR|F86218|F86 protein F22O13.8 [imported] -...    28  7.6
TC90458 similar to GP|19343726|gb|AAH25494.1 Similar to N-acylam...    27  9.9

>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score =  121 bits (304), Expect = 4e-28
 Identities = 60/98 (61%), Positives = 77/98 (78%)
 Frame = +3

Query: 256 NGTRMIVNALTKYIIVAIVLNRNTMGETTFIPRMSLTPSNADIPFKFQRRQFPVILCFAM 315
           +GTR+I+ +L K +I A V+     GE ++IPRM+L PS A++   F+R QFP++L FAM
Sbjct: 27  HGTRLIIVSLGKNVICARVIGGTHAGEVSYIPRMNLIPSGANVSITFERCQFPLVLSFAM 206

Query: 316 TINKSQGQSSTHVGLYLPRPVFTHVQLYVALSRVKSRN 353
           TINKSQGQ+ T VGLYLPRPVFTH QLYVA+SRVKSR+
Sbjct: 207 TINKSQGQTLTSVGLYLPRPVFTHGQLYVAVSRVKSRS 320


>TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein T24M8.10 -
           Arabidopsis thaliana, partial (11%)
          Length = 701

 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 42/109 (38%), Positives = 63/109 (57%)
 Frame = +3

Query: 139 PCKDPLLEIVNFSYPKLLFNLEKNSFFQERAILAPTLESVEEINNFMLAMILGEEIEYLN 198
           P  DP+  IV  +YP L+       F Q RAIL  T E V++IN+++L +I GEE    +
Sbjct: 381 PPGDPIDAIVQSTYPNLVSQYNNEQFLQSRAILTSTDEVVDQINDYVLKLIPGEERVIYS 560

Query: 199 CDTPCKSDEDSGVNAEWVTSEFLNDYKCSGIPNHQIKLKVGVPIMLIRN 247
            +   +S+ +     + +  EFL   K S +PNH++ LKVG PIML+R+
Sbjct: 561 AN---RSEVNDVQAFDAIPPEFLQSLKTSDLPNHKLTLKVGTPIMLLRD 698


>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 31/40 (77%), Positives = 34/40 (84%)
 Frame = -2

Query: 313 FAMTINKSQGQSSTHVGLYLPRPVFTHVQLYVALSRVKSR 352
           FAMTINKSQGQS  H+G+YLP  VF+H QLYVALSRV SR
Sbjct: 358 FAMTINKSQGQSLKHIGVYLPSSVFSHGQLYVALSRVTSR 239


>TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (1%)
          Length = 1009

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 17/24 (70%), Positives = 20/24 (82%)
 Frame = +2

Query: 329 GLYLPRPVFTHVQLYVALSRVKSR 352
           G+YLP+P+F H  LYVALSRV SR
Sbjct: 83  GMYLPQPIF*HG*LYVALSRVTSR 154


>TC80146 
          Length = 476

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = -3

Query: 316 TINKSQGQSSTHVGLYLPRPVFTHVQLY 343
           TINKS+ QS +++ +YL RP+F+H ++Y
Sbjct: 450 TINKSR*QSLSYMKIYLSRPIFSHEEMY 367


>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -1

Query: 331 YLPRPVFTHVQLYVALSRVKSRN 353
           +  R VF+H QLYVA+SRV SRN
Sbjct: 289 FYDREVFSHGQLYVAISRVSSRN 221


>BE205322 similar to PIR|F86218|F86 protein F22O13.8 [imported] - Arabidopsis
           thaliana, partial (5%)
          Length = 456

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 4/72 (5%)
 Frame = +3

Query: 62  KEAVRRLW----VLLSILHIYGSIAR*WN*LLI*DCKMLTHILHQQK*KSLLIGCFKWET 117
           +E +R  W    VLL +L +     R    L++    +L ++  ++K*K+L + C KW  
Sbjct: 102 REYLRMKW*ILRVLLVVLQMTTHTMRDLRLLILMTNCILRNLYRRRK*KTLFLSC*KWRV 281

Query: 118 EQLQPLMKLNHS 129
              +P   L  S
Sbjct: 282 RLRRPKKLLKKS 317


>TC90458 similar to GP|19343726|gb|AAH25494.1 Similar to
           N-acylaminoacyl-peptide hydrolase {Mus musculus},
           partial (6%)
          Length = 987

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
 Frame = -2

Query: 126 LNHSFRFLLIFI-------EPC----KDPLLEIVNFSYPKLLFNLEKNSFFQERAILAPT 174
           L H    LL+F+       E C     DPLL+++  SYP   ++    S  QE  +  P+
Sbjct: 749 LGHLGETLLVFLPSRGVR*ETCYKIESDPLLKVLQLSYPFRWYHSSPQSTNQEYQLYQPS 570

Query: 175 LESVEE 180
            +  ++
Sbjct: 569 AQGYKQ 552


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.343    0.151    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,344,960
Number of Sequences: 36976
Number of extensions: 181219
Number of successful extensions: 1583
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of query: 378
length of database: 9,014,727
effective HSP length: 98
effective length of query: 280
effective length of database: 5,391,079
effective search space: 1509502120
effective search space used: 1509502120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 59 (27.3 bits)