TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0121b.2
         (253 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF004903 similar to PIR|B96789|B96 protein T23E18.4 [imported] -...   182  1e-46
TC92211 similar to PIR|B86182|B86182 hypothetical protein [impor...   159  7e-40
TC81814 weakly similar to GP|9294541|dbj|BAB02804.1 high mobilit...   140  4e-34
TC88101 similar to PIR|B86182|B86182 hypothetical protein [impor...    41  4e-04
TC80444 similar to GP|15450515|gb|AAK96550.1 At2g17400 {Arabidop...    41  4e-04
TC81713                                                                29  2.0
BE203579 similar to PIR|F96585|F96 hypothetical protein F20D21.2...    28  2.6
BF633214 similar to GP|14495224|db contains EST C72594(E1889)~si...    28  4.4
TC81951                                                                28  4.4
TC85798 similar to PIR|T51979|T51979 multicatalytic endopeptidas...    27  7.5
TC92926 similar to GP|11139266|gb|AAG31651.1 PRLI-interacting fa...    27  9.9
CB894342 similar to GP|20197988|gb expressed protein {Arabidopsi...    27  9.9
TC88019 similar to GP|21539559|gb|AAM53332.1 unknown protein {Ar...    27  9.9

>BF004903 similar to PIR|B96789|B96 protein T23E18.4 [imported] - Arabidopsis
           thaliana, partial (30%)
          Length = 709

 Score =  182 bits (462), Expect = 1e-46
 Identities = 89/118 (75%), Positives = 101/118 (85%), Gaps = 1/118 (0%)
 Frame = +2

Query: 3   SAARTIRSGGDD-GKFYPPPLASHEVIVNDAKLFLDTLRQFHFHMGSKYMIPVIGGRKLD 61
           SA R+  SG DD  K YPPPLASH  +VND  LF DTLR+FHF M +K+MIPVIGG++LD
Sbjct: 356 SAVRSKNSGNDDEAKHYPPPLASHNDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELD 535

Query: 62  LHTLYVEVTRRSGYEKVVAEKKWREVGSVFNFSTTTTSASYVLKKHYWNLLYNFEQVH 119
           LH LYVEVTRRSGYEKVVAEKKWREVGSVF FS+TTTSAS+VL+KHY NLLY++EQVH
Sbjct: 536 LHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVH 709


>TC92211 similar to PIR|B86182|B86182 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (31%)
          Length = 798

 Score =  159 bits (403), Expect = 7e-40
 Identities = 89/232 (38%), Positives = 135/232 (57%), Gaps = 1/232 (0%)
 Frame = +3

Query: 18  YPPPLASHEVIVNDAKLFLDTLRQFHFHMGSKYMIPVIGGRKLDLHTLYVEVTRRSGYEK 77
           YPPP+A++E +V++ KLF+  L + H  MG+K+MIPVIGGR+LDLH L+VEVT R G+EK
Sbjct: 126 YPPPMATYEEVVDNPKLFILCLEKLHTLMGTKFMIPVIGGRELDLHRLFVEVTSRGGFEK 305

Query: 78  VVAEKKWREVGSVFNFSTTTTSASYVLKKHYWNLLYNFEQVHFFKVQGPITPPAGTVLNS 137
           ++ ++KW+EV  VFNF +T T+AS+VL+K+Y +LLY++EQ+++FK +   T     VL S
Sbjct: 306 IIKDRKWKEVTLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKAR-DWTNTTSDVLQS 482

Query: 138 FTLCFMEMDSLQGMYPNIHAVTEFESICDVLSGSSSSGKPDLALVEYAPKHANNGPESNV 197
            +        +Q  +P+                      P +    +     N+ P   +
Sbjct: 483 QSSIPAPAPKMQFSHPS----------------------PQVQPAVFQQLKVNSAPPEAM 596

Query: 198 EAKGYPRYGEGRIEEKFDCGYLVSVKLGSEVLRGVIFH-PEETVPPPSSRVV 248
            +        G I+ KFD GYLV+V +GSE L+GV++  P+  V P S   V
Sbjct: 597 GSSSAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSV 752


>TC81814 weakly similar to GP|9294541|dbj|BAB02804.1 high mobility group
           protein-like {Arabidopsis thaliana}, partial (33%)
          Length = 867

 Score =  140 bits (354), Expect = 4e-34
 Identities = 87/231 (37%), Positives = 119/231 (50%), Gaps = 3/231 (1%)
 Frame = +1

Query: 18  YPPPLASHEVIVNDAKLFLDTLRQFHFHMGSKYMIPVIGGRKLDLHTLYVEVTRRSGYEK 77
           YPPP A +  +V D+ LF   L+ FH  +G+K  IP IGG+ LDLH L+VEVT R G EK
Sbjct: 181 YPPPTAPYSDLVRDSNLFQQKLQSFHDSLGTKLKIPTIGGKPLDLHHLFVEVTSRGGIEK 360

Query: 78  VVAEKKWREVGSVFNFSTTTTSASYVLKKHYWNLLYNFEQVHFFKVQGPITPP---AGTV 134
           V+ ++KW+EV   FNF  T TS S++++K Y +LLY+FEQ ++F  Q P + P   +G V
Sbjct: 361 VIVDRKWKEVIMSFNFRDTITSGSFMVRKTYLSLLYHFEQAYYFCKQVPPSTPDALSGNV 540

Query: 135 LNSFTLCFMEMDSLQGMYPNIHAVTEFESICDVLSGSSSSGKPDLALVEYAPKHANNGPE 194
            NSFT                                      D A +  +P   +  P 
Sbjct: 541 ANSFTT-----------------------------------NTDGAAINDSPVQVS--PI 609

Query: 195 SNVEAKGYPRYGEGRIEEKFDCGYLVSVKLGSEVLRGVIFHPEETVPPPSS 245
           S  +  G      G I+ KFD GY+V+V LGSE L+GV++H        SS
Sbjct: 610 SPAQTLG--SSVRGTIDMKFDDGYIVTVDLGSEQLKGVLYHVSSNASKGSS 756


>TC88101 similar to PIR|B86182|B86182 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 1362

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +3

Query: 208 GRIEEKFDCGYLVSVKLGSEVLRGVIFHPEETVPPPSS 245
           G I+ KFD GY+V+V LGSE L+GV++H        SS
Sbjct: 960 GTIDGKFDDGYIVTVDLGSEQLKGVLYHVSSNASKDSS 1073


>TC80444 similar to GP|15450515|gb|AAK96550.1 At2g17400 {Arabidopsis
           thaliana}, partial (31%)
          Length = 1118

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 23/65 (35%), Positives = 32/65 (48%)
 Frame = +1

Query: 53  PVIGGRKLDLHTLYVEVTRRSGYEKVVAEKKWREVGSVFNFSTTTTSASYVLKKHYWNLL 112
           P   G  L+   L+  V R  GYEKV + K WR VG  F    T T+ S+  +  Y   L
Sbjct: 43  PKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKAL 222

Query: 113 YNFEQ 117
            ++E+
Sbjct: 223 LDYER 237


>TC81713 
          Length = 736

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 105 KKHYWNLLYNFEQVHFFKVQGPITPPA 131
           KKHY + +Y+++    FKVQGPI  P+
Sbjct: 151 KKHYLSFIYHYQLR--FKVQGPIYTPS 225


>BE203579 similar to PIR|F96585|F96 hypothetical protein F20D21.21 [imported]
           - Arabidopsis thaliana, partial (20%)
          Length = 596

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 27/96 (28%), Positives = 40/96 (41%)
 Frame = +2

Query: 85  REVGSVFNFSTTTTSASYVLKKHYWNLLYNFEQVHFFKVQGPITPPAGTVLNSFTLCFME 144
           RE+ ++   + +  SA   LK +  +L  +F  +  F  Q   T   GTV   FT+   E
Sbjct: 62  RELENLDKDADSRKSAMRALKSYVKDL--DFRAIPMFLAQVSETKETGTVSGEFTISLYE 235

Query: 145 MDSLQGMYPNIHAVTEFESICDVLSGSSSSGKPDLA 180
           +  L    P         SIC  LS S +S    L+
Sbjct: 236 V--LDPTMPEDKKKHIIHSICKPLSDSLTSSLDSLS 337


>BF633214 similar to GP|14495224|db contains EST C72594(E1889)~similar to
          Arabidopsis thaliana chromosome 1  F25I16.5~unknown
          protein, partial (16%)
          Length = 502

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
 Frame = +2

Query: 39 LRQFHFHMGSKYMIPVIGGRKL---------------DLHTLYVEVTRRSGYEKV 78
          ++ +H H G   ++P++GG +L               DLH L +   R S + +V
Sbjct: 38 VKGYHLHQGKVTLLPLVGGERLVIFGGRGEGDANYLNDLHILDLRTMRWSSFPEV 202


>TC81951 
          Length = 653

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (49%)
 Frame = -1

Query: 91  FNFSTTTTSASYVLKKHYWNLLYNFEQVHFFK 122
           F+FS++ TS     KK  W     F  +H FK
Sbjct: 587 FSFSSSATSGGAXQKKLRWPSAKKFSHIHLFK 492


>TC85798 similar to PIR|T51979|T51979 multicatalytic endopeptidase complex
           (EC 3.4.99.46) chain PBB2 [imported] - Arabidopsis
           thaliana, partial (94%)
          Length = 1161

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 12/36 (33%), Positives = 17/36 (46%)
 Frame = -2

Query: 53  PVIGGRKLDLHTLYVEVTRRSGYEKVVAEKKWREVG 88
           P +GGR  DL  L + +   +   K+  E  W E G
Sbjct: 146 PPLGGRSTDLVILEIRINPENE*RKMEIELSWNEAG 39


>TC92926 similar to GP|11139266|gb|AAG31651.1 PRLI-interacting factor K
           {Arabidopsis thaliana}, partial (35%)
          Length = 1032

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 9/43 (20%), Positives = 22/43 (50%)
 Frame = +3

Query: 73  SGYEKVVAEKKWREVGSVFNFSTTTTSASYVLKKHYWNLLYNF 115
           +G  K+ + + W+ +   F    +  +  Y+ K+ +WN+ + F
Sbjct: 393 AGVVKLSSRQNWKSI*KFFTSHFSALAE*YLRKRKWWNIKHQF 521


>CB894342 similar to GP|20197988|gb expressed protein {Arabidopsis thaliana},
           partial (64%)
          Length = 838

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 148 LQGMYPNIHAVTEFE----SICDVLSGSSSSGKPDLALV 182
           +QG  P IH  T  +    +  DVLSGSS+    DL ++
Sbjct: 198 VQGYSPTIHPTTSTDLSSIATLDVLSGSSARQHTDLTML 314


>TC88019 similar to GP|21539559|gb|AAM53332.1 unknown protein {Arabidopsis
           thaliana}, partial (66%)
          Length = 1706

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 11/36 (30%), Positives = 22/36 (60%)
 Frame = -1

Query: 67  VEVTRRSGYEKVVAEKKWREVGSVFNFSTTTTSASY 102
           +E+++RSG+E +  E++WR    V +    T +A +
Sbjct: 293 LEISQRSGHESLQEERRWRSNCCVLSAKIQT*TARW 186


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,683,659
Number of Sequences: 36976
Number of extensions: 122900
Number of successful extensions: 652
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of query: 253
length of database: 9,014,727
effective HSP length: 94
effective length of query: 159
effective length of database: 5,538,983
effective search space: 880698297
effective search space used: 880698297
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)