Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0118a.3
         (328 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78906 similar to GP|18377616|gb|AAL66958.1 unknown protein {Ar...   118  4e-27
TC90645 weakly similar to GP|15289850|dbj|BAB63547. contains EST...   103  9e-23
TC87532 similar to GP|21537285|gb|AAM61626.1 unknown {Arabidopsi...    80  1e-15
TC89538 weakly similar to GP|21689895|gb|AAM67508.1 unknown prot...    67  9e-12
TC90509 similar to GP|21537285|gb|AAM61626.1 unknown {Arabidopsi...    49  3e-06
TC79215 similar to GP|20259431|gb|AAM14036.1 unknown protein {Ar...    32  0.26
TC88517 similar to GP|19386853|dbj|BAB86231. hypothetical protei...    32  0.34
TC88831 similar to GP|9758871|dbj|BAB09425.1 gb|AAD20092.1~gene_...    31  0.75
TC79235 weakly similar to GP|7297741|gb|AAF52992.1| CG17108 gene...    29  2.9
TC81648 similar to PIR|T00840|T00840 probable senescence-related...    29  2.9
BG647894 similar to GP|17381274|gb AT5g11700/T22P22_90 {Arabidop...    28  3.7
TC84643 similar to GP|21689887|gb|AAM67504.1 unknown protein {Ar...    28  3.7
TC85277 similar to GP|15293299|gb|AAK93760.1 unknown protein {Ar...    28  6.4
TC88091 homologue to SP|P51819|HS83_PHANI Heat shock protein 83....    28  6.4
BE320311 similar to PIR|G84781|G847 hypothetical protein At2g365...    28  6.4
BI308024                                                               28  6.4
TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-...    27  8.3
AJ504066 weakly similar to PIR|T37811|T378 very hypothetical pro...    27  8.3

>TC78906 similar to GP|18377616|gb|AAL66958.1 unknown protein {Arabidopsis
            thaliana}, partial (43%)
          Length = 1746

 Score =  118 bits (295), Expect = 4e-27
 Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
 Frame = +2

Query: 144  PLLPPSISHRR---TVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVD 200
            P L P  S RR   T+ LDLDETLVHS T    +  DF      +      YVK+RP + 
Sbjct: 1013 PTLAPKQSPRRKSVTLVLDLDETLVHS-TLEHCDDADFTFNIFFNMKDYIVYVKQRPFLH 1189

Query: 201  EFLEALAAKFEVVVFTAALREYASLVLDRVDRN-RLVSHRLYRDSCKQEDGKLVKDLSLA 259
            +FLE ++  FEVV+FTA+   YA+ +LD +D + + +S RLYR+SC   DG   KDL++ 
Sbjct: 1190 KFLERVSDMFEVVIFTASQSIYANQLLDILDPDEKFISRRLYRESCMFSDGNYTKDLTIL 1369

Query: 260  GRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAV 318
            G DL +VVI+D++P  F  Q  N I I+ + DD  D  L  L  F + +   DD+R  +
Sbjct: 1370 GIDLAKVVIIDNSPQVFRLQVNNGIPIKSWFDDPSDCALMSLLPFLETLADADDVRPII 1546


>TC90645 weakly similar to GP|15289850|dbj|BAB63547. contains ESTs
           AU092190(C11346) AU062476(C11346)
           AU063421(C61571)~unknown protein, partial (25%)
          Length = 683

 Score =  103 bits (257), Expect = 9e-23
 Identities = 59/142 (41%), Positives = 84/142 (58%), Gaps = 1/142 (0%)
 Frame = +3

Query: 182 PVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNR-LVSHRL 240
           PV+       YV+KRP + EFLE ++  FE+V+FTA+ + YA  +LD +D ++ L S RL
Sbjct: 6   PVLLDKEYTVYVRKRPFLHEFLERVSKMFEIVIFTASKKIYAEKLLDVLDPDKKLFSRRL 185

Query: 241 YRDSCKQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWK 300
           YRDSC  +DG   KDL++ G DL +V IVD++P  F  Q  N I I  + DD  D  L  
Sbjct: 186 YRDSCIYQDGTFTKDLTVLGIDLAKVAIVDNSPQVFRLQVNNGIPIESWFDDPSDSALIS 365

Query: 301 LRMFFDGVDCCDDMRDAVKQFF 322
           L  F + +   DD+R  + + F
Sbjct: 366 LLPFLEKLVDVDDVRPIIAEKF 431


>TC87532 similar to GP|21537285|gb|AAM61626.1 unknown {Arabidopsis
           thaliana}, partial (84%)
          Length = 1411

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 58/154 (37%), Positives = 79/154 (50%), Gaps = 19/154 (12%)
 Frame = +3

Query: 155 TVFLDLDETLV--HSNTAPPPESFDFVVRPVIDGVPMEFY----------------VKKR 196
           TV LDLDETLV  +  ++ P       +   ++   ME                  V +R
Sbjct: 528 TVVLDLDETLVCAYETSSLPAALRSQAIEAGLNWFDMECVSSDKEGEGRPKINYVTVFER 707

Query: 197 PGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDS-CKQEDGKLVKD 255
           PG+ EFL  L+   ++V+FTA L  YA  ++D +D+    S RLYR S    E  + VKD
Sbjct: 708 PGLKEFLTKLSEFADLVLFTAGLEGYARPLVDIIDKENRFSLRLYRPSTISTEHREHVKD 887

Query: 256 LSLAGRDLKRVVIVDDNPNSFANQPENAILIRPF 289
           L+   +DL R+VIVD+NP SF  QP N I   PF
Sbjct: 888 LTCISKDLDRIVIVDNNPFSFVLQPVNGIPCIPF 989


>TC89538 weakly similar to GP|21689895|gb|AAM67508.1 unknown protein
           {Arabidopsis thaliana}, partial (37%)
          Length = 990

 Score = 67.0 bits (162), Expect = 9e-12
 Identities = 44/125 (35%), Positives = 62/125 (49%)
 Frame = +3

Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
           LP L P   H  T+ LDL+ETL+H                 I      +   KRPGVD F
Sbjct: 630 LPDLLPQEQHVFTLVLDLNETLIH----------------YIWTRDTSWQTFKRPGVDAF 761

Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
           LE LA  FE+ V+T     +   V++R+D    + +RL R + K +DGK  +DLS   R+
Sbjct: 762 LEHLAQFFEIXVYTDEQNMFVDPVIERLDPKHCIXYRLSRPATKYQDGKHYRDLSKLNRN 941

Query: 263 LKRVV 267
             +V+
Sbjct: 942 PAKVM 956


>TC90509 similar to GP|21537285|gb|AAM61626.1 unknown {Arabidopsis
           thaliana}, partial (62%)
          Length = 1317

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +3

Query: 185 DGVPMEFYVK--KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYR 242
           DG P+  YV   +RPG+ EFL+ L+   ++V+FTA +  YA  ++DR+D     S RLYR
Sbjct: 303 DGEPIINYVTVFERPGLKEFLKQLSEFADLVLFTAGVEGYARPLVDRIDTENWFSLRLYR 482

Query: 243 DS 244
            S
Sbjct: 483 PS 488



 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +2

Query: 248 EDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPF 289
           E  + VKDL+   +DL  +VIVD+NP SF  QP+N I   PF
Sbjct: 674 EHREYVKDLTCISKDLCNIVIVDNNPYSFLLQPDNGIPCVPF 799


>TC79215 similar to GP|20259431|gb|AAM14036.1 unknown protein {Arabidopsis
           thaliana}, partial (43%)
          Length = 1240

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
 Frame = +1

Query: 162 ETLVHSNTAPPPESFDFVVRPVIDGVPMEF--YVKKRPGVDEFLEALAAKFEVVVFTAAL 219
           + L ++   P P+ F     P + G P     Y++ R  +D  L  LA +    ++    
Sbjct: 304 QALGNNTNVPVPKVFCLCNDPAVIGTPFYIMEYLEGRIFIDPKLPGLAPQSRSTIYRETA 483

Query: 220 REYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFA 277
           +  ASL    VD   L ++    D CK++  +  K    +  D K       NP  FA
Sbjct: 484 KTLASLHSANVDSIGLGNYGRRNDYCKRQIERWAKQYVSSTSDGKPA----SNPKMFA 645


>TC88517 similar to GP|19386853|dbj|BAB86231. hypothetical protein~similar
           to Homo sapiens chromosome 5  LOC134510, partial (70%)
          Length = 1396

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 23/190 (12%)
 Frame = +3

Query: 148 PSISHRRTVFLDLDETLV-HSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEAL 206
           P    ++ + LD+D TL  H +TA  P                      RP + EFL A 
Sbjct: 423 PCRQGKKLLVLDIDYTLFDHRSTAENPLQL------------------MRPYLHEFLTAA 548

Query: 207 AAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLV------------K 254
            A++++++++A   ++ +L + ++    ++ +  Y+ +   +   ++            K
Sbjct: 549 YAEYDIMIWSATSMKWITLKMSQLG---VLDNPNYKITALLDHMGMITVQTPSRGVFDCK 719

Query: 255 DLSLAGRDL------KRVVIVDDNPNSFANQPENAILIRPF----VDDVFDRELWKLRMF 304
            L L              ++ DD   +F   P+N + I+PF     +   D+EL KL  +
Sbjct: 720 PLGLIWAQFPEFYSASNTIMFDDLRRNFVMNPQNGLTIKPFKKAHANRDTDQELVKLTQY 899

Query: 305 FDGVDCCDDM 314
              +   DD+
Sbjct: 900 LLAIAELDDL 929


>TC88831 similar to GP|9758871|dbj|BAB09425.1
           gb|AAD20092.1~gene_id:K24G6.5~similar to unknown protein
           {Arabidopsis thaliana}, partial (7%)
          Length = 880

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = -2

Query: 30  IFSSLRFLPYPNTKNQAMVSRVKRVP----TKSIKD-IRRNNNRRWRRKTPI 76
           +  ++ FLP P  ++   V  V  +     T S K+ + RNNN R+RR+TPI
Sbjct: 195 LLETITFLPMPIPRSLVFVIVVVVIHLCGNTASTKEALMRNNNNRYRRETPI 40


>TC79235 weakly similar to GP|7297741|gb|AAF52992.1| CG17108 gene product
           {Drosophila melanogaster}, partial (21%)
          Length = 648

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
           P PP P  PP + H          T +H++ APPP
Sbjct: 368 PPPPNPYAPPPVVHHH-------HTPLHAHPAPPP 285


>TC81648 similar to PIR|T00840|T00840 probable senescence-related protein
           [imported] - Arabidopsis thaliana, partial (36%)
          Length = 854

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
           PS PL LLP  IS  +++ +      + S T PPP
Sbjct: 62  PSQPLLLLPNQISTLQSITISTTSLKISSLTPPPP 166


>BG647894 similar to GP|17381274|gb AT5g11700/T22P22_90 {Arabidopsis
           thaliana}, partial (43%)
          Length = 604

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 139 PSPPLPLLPPS--ISHRRTVFLDLDETLVHSNTAPPPE--SFDFVVRPVI 184
           P PP PL+PPS  ++ R      +  T  H    PPP   SF  VV P++
Sbjct: 425 PEPPPPLIPPSPPLAKRSPETSTVSTTSNHILPPPPPP*LSFLTVVPPLL 276


>TC84643 similar to GP|21689887|gb|AAM67504.1 unknown protein {Arabidopsis
           thaliana}, partial (4%)
          Length = 491

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 15/35 (42%), Positives = 21/35 (59%)
 Frame = -3

Query: 33  SLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNN 67
           S++FL  PN K ++     KRVP   I+D+  NNN
Sbjct: 291 SIQFLNTPNLKTESF--HQKRVPI*RIRDLNCNNN 193


>TC85277 similar to GP|15293299|gb|AAK93760.1 unknown protein {Arabidopsis
            thaliana}, partial (40%)
          Length = 1976

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 17/55 (30%), Positives = 25/55 (44%)
 Frame = +1

Query: 113  YKILKKTSPQDDSICRTLVFDGGDNDPSPPLPLLPPSISHRRTVFLDLDETLVHS 167
            + +L KT  Q+  +   LV+    N     LPLLPP     R   L  + + +HS
Sbjct: 1297 FYVLVKTWQQNKQLAEWLVYSDSSNKHYRLLPLLPPGHLCSRNNSLLYNPSFLHS 1461


>TC88091 homologue to SP|P51819|HS83_PHANI Heat shock protein 83. [Violet
           Japanese morning glory] {Pharbitis nil}, partial (77%)
          Length = 1813

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
 Frame = +1

Query: 177 DFVVRPVIDGVPMEFYV----KKRPGVDEFLEALAAK-FEVVVFTAALREYASLVLDRVD 231
           D+V R + +G    +Y+    KK      FLE L  K +EV+    A+ EYA   L   D
Sbjct: 889 DYVTR-MKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYD 1065

Query: 232 RNRLVS---HRLYRDSCKQEDGKLVKDLSLAGRDLKRVV 267
             +LVS     L  D   +E+ K  ++   +  DL RV+
Sbjct: 1066GKKLVSATKEGLKLDDETEEEKKKKEEKKKSFEDLCRVM 1182


>BE320311 similar to PIR|G84781|G847 hypothetical protein At2g36540
           [imported] - Arabidopsis thaliana, partial (11%)
          Length = 424

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
 Frame = +1

Query: 191 FYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRV---DRNRLV----SHRLYRD 243
           F + KRP  +EF++    +FEV V+++A+       L       +N+L+     H+    
Sbjct: 13  FLLYKRPFSEEFMKFCLERFEVGVWSSAMEHNVDGALACAIGDSKNKLLFVWDQHKCRDS 192

Query: 244 SCKQ-EDGK---LVKDLSLAGRDLKR--------VVIVDDNP-NSFANQPENAIL 285
             K  E+ K     K+L      +K+         +++DD P  SF N P  +I+
Sbjct: 193 GFKSLENNKKPLFFKELKKVWDTIKKGGPYSASNTLLIDDKPYKSFLNPPNTSII 357


>BI308024 
          Length = 683

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = +1

Query: 147 PPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVI 184
           PP   + R+ F    +T+VH  ++ PP S  F    V+
Sbjct: 196 PPFFINTRSSFFTTGDTVVHYTSSSPPPSSPFTSNTVV 309


>TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-like
           protein - Arabidopsis thaliana, partial (33%)
          Length = 1185

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 51  VKRVPTKSIKDIRRNNNRRWRRK 73
           VKR+ T S++ ++R N  RW+R+
Sbjct: 453 VKRLKTASLRILKRMNRYRWKRR 521


>AJ504066 weakly similar to PIR|T37811|T378 very hypothetical protein
           SPAC17A2.10c - fission yeast (Schizosaccharomyces
           pombe), partial (9%)
          Length = 580

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 23/37 (61%)
 Frame = +2

Query: 167 SNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFL 203
           S+T PPP + DF++RP +   P    + + P VD++L
Sbjct: 170 SSTRPPPSAVDFLLRPPL*LSPSS-CLFRFPAVDQWL 277


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,880,883
Number of Sequences: 36976
Number of extensions: 171805
Number of successful extensions: 1150
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of query: 328
length of database: 9,014,727
effective HSP length: 96
effective length of query: 232
effective length of database: 5,465,031
effective search space: 1267887192
effective search space used: 1267887192
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)


Lotus: description of TM0118a.3