TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0117b.7
         (281 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87106 similar to GP|22655230|gb|AAM98205.1 putative protein {A...   412  e-115
BQ751250 similar to PIR|H84514|H845 hypothetical protein At2g141...    31  0.61
TC76916 MtN4                                                           30  1.0
TC86258 similar to GP|16930433|gb|AAL31902.1 AT4g17230/dl4650c {...    29  1.8
TC92013 homologue to GP|11595557|emb|CAC18142. related to c-modu...    29  1.8
TC77641 similar to GP|21595125|gb|AAM66074.1 endosperm-specific ...    29  2.3
BQ144031 similar to GP|3132295|dbj| long ORF {TT virus}, partial...    28  3.0
TC92602 similar to SP|P57997|IF2C_PHAVU Translation initiation f...    28  5.1
TC77763 similar to GP|15215674|gb|AAK91382.1 AT4g27500/F27G19_10...    27  6.7
TC78544 weakly similar to PIR|T03747|T03747 glucosyltransferase ...    27  6.7
AW695994                                                               27  8.8
TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli...    27  8.8
BG587146                                                               27  8.8
TC92081 weakly similar to GP|14587312|dbj|BAB61223. contains EST...    27  8.8

>TC87106 similar to GP|22655230|gb|AAM98205.1 putative protein {Arabidopsis
           thaliana}, partial (40%)
          Length = 1131

 Score =  412 bits (1058), Expect = e-115
 Identities = 212/281 (75%), Positives = 233/281 (82%)
 Frame = +3

Query: 1   MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS 60
           MDLPN DKQ  + +KKT+ +DLQNDNK M  TSVG+SS LKDKDP TDSNR +GTKRP S
Sbjct: 204 MDLPNGDKQLVI-LKKTSLKDLQNDNKNMVPTSVGNSSFLKDKDPGTDSNRATGTKRPSS 380

Query: 61  DYPVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPPRQLCSEEETA 120
           DYPV HHLQQSPGN+ ANGHLVYVRRKSE E+ K  AFEN + N  C   RQL  EEETA
Sbjct: 381 DYPVIHHLQQSPGNNAANGHLVYVRRKSEGEMSKSTAFENTSINGCCPHSRQLYCEEETA 560

Query: 121 LPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPT 180
            PKPQ+KEP VSC PAF+PFP+ SSIS+SG+PS+PIS G+S M L PVESN V  SSG T
Sbjct: 561 QPKPQIKEPKVSCLPAFSPFPMASSISTSGKPSIPISLGRSGMMLTPVESNYVAASSGHT 740

Query: 181 IGNPKGLIDMQWEERYQQLQMLLRKLDQSDQVEYVQMLQSLSSVELSRHAVELEKRAIQL 240
           IGNPK   ++ WEE+YQ LQMLLRKLDQSDQ EY+QMLQSLSSVELSRHAVELEKR+IQL
Sbjct: 741 IGNPKVFKNVHWEEQYQHLQMLLRKLDQSDQAEYIQMLQSLSSVELSRHAVELEKRSIQL 920

Query: 241 SLEEAKELQRVAVLNVLGKSAKKFKAPADHDECSDKLKTSS 281
           SLEEAKELQRVAVLNVLGKSAK FKAPADHDE SDKLKT S
Sbjct: 921 SLEEAKELQRVAVLNVLGKSAKNFKAPADHDEYSDKLKTLS 1043


>BQ751250 similar to PIR|H84514|H845 hypothetical protein At2g14170
           [imported] - Arabidopsis thaliana, partial (10%)
          Length = 573

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 4/72 (5%)
 Frame = -2

Query: 96  AAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLT----SSISSSGR 151
           AA   P  +A   P   LC       P P  + P     PA  P P T    S+ + S R
Sbjct: 464 AATSRPARSASTSPSPSLCP----CSPSPATRSP----LPAAVPTPSTAGPASTFTLSRR 309

Query: 152 PSVPISCGKSTM 163
           PS+P  CG++ M
Sbjct: 308 PSLP--CGRAPM 279


>TC76916 MtN4
          Length = 1850

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 1/44 (2%)
 Frame = +3

Query: 139 PFPLTSSISSSGRPS-VPISCGKSTMKLAPVESNCVTTSSGPTI 181
           P   T + SSS  PS  P +C K+T  L    +NC T++S  T+
Sbjct: 651 PIINTKTTSSSQTPSSTPTTCSKTTSTLCSKTTNC*TSNSTSTL 782


>TC86258 similar to GP|16930433|gb|AAL31902.1 AT4g17230/dl4650c {Arabidopsis
            thaliana}, partial (62%)
          Length = 2237

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 15/47 (31%), Positives = 22/47 (45%)
 Frame = +3

Query: 127  KEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCV 173
            +E N +  P F  F  T    ++   S+ ++C K   K   VE NCV
Sbjct: 1587 QESNTNTSPFFQRFVETMDFYTAMFESIDVACTKDDKKRISVEQNCV 1727


>TC92013 homologue to GP|11595557|emb|CAC18142. related to c-module-binding
           factor {Neurospora crassa}, partial (2%)
          Length = 1437

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +1

Query: 88  SEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSIS 147
           S  +L + A   + + +A  Q PR         LP+P+ + P     P   P PL     
Sbjct: 124 STTQLSQSARGMSDSPSATDQLPRP--RPRPRPLPRPRPRPPPR---PRPPPLPLIDGPL 288

Query: 148 SSGRPSVPISCGKSTMKLAPVESNCVT-TSSGPTIGNPK 185
            +G P +P+S     + L+  +S+  + T+ GP  G P+
Sbjct: 289 MAGEPPIPLSDSDEEISLSDSKSDSPSRTTVGPAGGLPR 405


>TC77641 similar to GP|21595125|gb|AAM66074.1 endosperm-specific
           protein-like protein {Arabidopsis thaliana}, partial
           (82%)
          Length = 1488

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 24/77 (31%), Positives = 34/77 (43%)
 Frame = +3

Query: 101 PTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGK 160
           PT +    PP        T+ PKP    P  S  PA  P P  SS +    PS P +   
Sbjct: 84  PTTSPKSSPPTLTTPNTTTSFPKP--NSPTKST-PA-KPSPS*SSTTPHSLPSPPPTLSP 251

Query: 161 STMKLAPVESNCVTTSS 177
           S+ K +P  S+  T+++
Sbjct: 252 SSKKSSPS*SSSTTSTT 302


>BQ144031 similar to GP|3132295|dbj| long ORF {TT virus}, partial (20%)
          Length = 1411

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 6/83 (7%)
 Frame = +2

Query: 110 PRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLA--- 166
           P   C   + A P P      V   P+  PFP   SI  + +P  P+S    T+ L    
Sbjct: 248 PAPACRLADRASPAPH----TVPALPSHIPFPSAFSIPFANQPPPPVSRVGFTLPLQYHN 415

Query: 167 ---PVESNCVTTSSGPTIGNPKG 186
               ++S+ ++  +G +   P+G
Sbjct: 416 IPFILQSSSLSGGAGESPQGPRG 484


>TC92602 similar to SP|P57997|IF2C_PHAVU Translation initiation factor IF-2 
           chloroplast precursor (PvIF2cp). [Kidney bean  French
           bean], partial (17%)
          Length = 912

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 119 TALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRP 152
           T +P+P +  P+V+  PA  P PL ++   S  P
Sbjct: 316 TRMPQPFVTFPSVTIHPAARPLPLLNTARISAEP 215


>TC77763 similar to GP|15215674|gb|AAK91382.1 AT4g27500/F27G19_100
           {Arabidopsis thaliana}, partial (38%)
          Length = 2297

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 128 EPNVSCFPA---FAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTS 176
           +PN+   PA   F+ FP + S ++   PS P+S G  T+    + ++   T+
Sbjct: 344 DPNLMVSPAPTSFSSFPFSFSRATGLSPSTPLSIGP*TISNPTISTDIAPTT 189



 Score = 26.9 bits (58), Expect = 8.8
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 4/145 (2%)
 Frame = +1

Query: 123  KPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPTIG 182
            KP L+EP  +  P   P P+      + +PS             PVE+         + G
Sbjct: 1363 KPLLEEPKPAAEPEALPKPVAKQPKEAPKPS-------------PVET-LPAQKETKSKG 1500

Query: 183  NPKGLIDMQWEERYQQLQMLLRKLDQSDQVEYVQMLQ----SLSSVELSRHAVELEKRAI 238
                 ID  +E      +    K  + D  +  +M +    + + +   R     EK A 
Sbjct: 1501 RDLAAIDDDYEFENPHKEAPAAKEPEIDPAKLKEMKREEEIAKAKLAAERKKKMAEKAAA 1680

Query: 239  QLSLEEAKELQRVAVLNVLGKSAKK 263
            + +L+  KE ++   L VL K AKK
Sbjct: 1681 KAALKAQKEAEK--KLKVLEKKAKK 1749


>TC78544 weakly similar to PIR|T03747|T03747 glucosyltransferase IS5a (EC
            2.4.1.-)  salicylate-induced - common tobacco, partial
            (26%)
          Length = 1248

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 109  PPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLT 143
            PP Q CS  E   P P L  P+  CF    P   T
Sbjct: 1155 PPPQGCSISELVGPNP*L*NPSFQCFSPQIPLAAT 1051


>AW695994 
          Length = 509

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 128 EPNVSCFPA---FAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTT 175
           +PN+   PA   F+ FP + S ++   PS P+S G  T+    + ++   T
Sbjct: 339 DPNLMVSPAPTSFSSFPFSFSRATGLSPSTPLSIGP*TISNPTISTDIAPT 187


>TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
           glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
           partial (15%)
          Length = 984

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 15/32 (46%), Positives = 16/32 (49%)
 Frame = +1

Query: 136 AFAPFPLTSSISSSGRPSVPISCGKSTMKLAP 167
           A    PL SS+SSS RPS   S   ST    P
Sbjct: 871 AVVVLPLLSSVSSSPRPSASPSTSASTAPSVP 966


>BG587146 
          Length = 734

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 90  AELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSC-FPAFAPFPLTSSISS 148
           A++G+C A E PT++     P    S+   A  +P   + +V+   P+  P    + +  
Sbjct: 191 ADIGRCIATERPTHSVAT*RPSS--SQSSVAT*RPSSSQSSVAT*RPSVRP----ARLLR 352

Query: 149 SGRPSVPISCGKSTMKLAPVESNCV 173
           S R  VP+ C    + L P   +CV
Sbjct: 353 SDRAFVPLGC-YVAIGLEPKFGSCV 424


>TC92081 weakly similar to GP|14587312|dbj|BAB61223. contains EST
           AU057376(S21389)~similar to Arabidopsis thaliana
           chromosome 5  F8F6.250~unknown, partial (5%)
          Length = 650

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 4/61 (6%)
 Frame = -3

Query: 120 ALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPIS----CGKSTMKLAPVESNCVTT 175
           AL  P+  +PNV+      P+   +   +  R S+  S    CG+S    + + SNCVTT
Sbjct: 309 ALTTPK*YKPNVA-----PPYNTKAVQPND*RVSLKNSSFEYCGRSIKSFSDIYSNCVTT 145

Query: 176 S 176
           S
Sbjct: 144 S 142


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.310    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,386,134
Number of Sequences: 36976
Number of extensions: 126908
Number of successful extensions: 579
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of query: 281
length of database: 9,014,727
effective HSP length: 95
effective length of query: 186
effective length of database: 5,502,007
effective search space: 1023373302
effective search space used: 1023373302
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)