TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0117b.14
         (458 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC92009                                                                42  6e-04
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch...    38  0.007
TC85918 similar to GP|13562014|gb|AAK30610.1 fibroin 1 {Plectreu...    36  0.035
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO...    35  0.079
TC87274 similar to PIR|S51232|S51232 gibberellin-responsive ovar...    32  0.51
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir...    32  0.51
TC87342 PIR|S41431|S41431 GTP-binding protein  ras-like - fava b...    30  1.5
TC78742 similar to GP|3819164|emb|CAA09989.1 cytosolic chaperoni...    29  4.3
BF636819                                                               29  4.3
TC91012 similar to GP|13605698|gb|AAK32842.1 AT5g64940/MXK3_17 {...    28  7.4
TC89831 similar to PIR|H96569|H96569 unknown protein  54928-5675...    28  9.7
TC79241 similar to GP|21740501|emb|CAD40825. OSJNBa0006B20.16 {O...    28  9.7
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati...    28  9.7
AW697235                                                               28  9.7
TC87303 homologue to GP|4586449|dbj|BAA76393.1 cytochrome c oxid...    28  9.7

>TC92009 
          Length = 974

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +2

Query: 4   EFDGREAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGE-AFMWWFCWRRRNQKATWWEF 62
           +F G +  GW+   E       +   +K   A  ++  E A +W++ W + N  A W  F
Sbjct: 695 QFTGTDPAGWITRAEMFFADNEIHSCDKLQWAFMSMEDEKALLWFYSWCQENPDADWKSF 874

Query: 63  VEALLRKFEPELEPYM-PEPVQDSEEEEIP 91
             A++R+F   +E     + VQ+ ++E  P
Sbjct: 875 SMAMIREFGARMEHRTDKQMVQNHDQESEP 964


>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
           partial (7%)
          Length = 2304

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
 Frame = +2

Query: 3   PEFDGR----EAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWWFCWRRRNQK-- 56
           P+F+G     +   WL  +E+  E K V EE+K       L   A +WW   +RR ++  
Sbjct: 629 PDFEGNLQLDDFLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREG 808

Query: 57  ----ATWWEFVEALLRKFEP 72
                TW +  + L RK+ P
Sbjct: 809 KSKIKTWDKMRQKLTRKYLP 868


>TC85918 similar to GP|13562014|gb|AAK30610.1 fibroin 1 {Plectreurys tristis},
            partial (8%)
          Length = 4117

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
 Frame = -1

Query: 71   EPELEPYMPE--PVQDSEEEEIPGKQEVLEAERRTVVVEAKPEANSVLLAKSEIKPYSPE 128
            +PELEP   E   V    E+E   K E  E  +   +VE+  EAN    A +     S E
Sbjct: 2638 KPELEPLATEEPKVTKEPEKESQEKSEEAEQPKAIAIVESTVEANEEKTAAA----ISEE 2471

Query: 129  NS--EMEASRKDSEFAMAAE-QTAEVSRCQPVTVVDYIDCTLTAKGEKIDAEGE 179
                E+E +    E  M  E  TAE+ + +P  VV  ++ T T K E +  E E
Sbjct: 2470 TKIIEVEPTETVKEEPMVTEVATAEIVKEEP--VVTEVEATETLKEELVATEVE 2315


>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
           {Encephalitozoon cuniculi}, partial (0%)
          Length = 1247

 Score = 34.7 bits (78), Expect = 0.079
 Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 10/80 (12%)
 Frame = -2

Query: 3   PEFDGR----EAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWWFCWRRRNQK-- 56
           P+F+G     +   WL ++E+  + K V EE+K       L   A +WW   +RR ++  
Sbjct: 724 PDFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKREG 545

Query: 57  ----ATWWEFVEALLRKFEP 72
                TW +  + L RK+ P
Sbjct: 544 KSKIKTWEKMRQKLTRKYLP 485


>TC87274 similar to PIR|S51232|S51232 gibberellin-responsive ovarian protein
           G14 - garden pea (fragment), partial (45%)
          Length = 734

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
 Frame = +1

Query: 72  PELEPYMPEPVQ--DSEEEEIPGKQEVLEAERRTVVVEAKPEANSVLLAKSEIK-----P 124
           P  EP   E V   ++EE E+P     +EAE   V  EAKPE  +    K E+K      
Sbjct: 184 PASEPATTEEVVAVENEETEVP-----VEAESTQVTQEAKPEVENPEPEKVEVKEEVSAE 348

Query: 125 YSPENSEMEAS--RKDSEFAMAAEQTAEVSRCQPVTVVDYIDCTLTAKGEKI 174
            + E +E E++  + +++  ++ E+  E +  +   +   ++   T +  K+
Sbjct: 349 EAKETTETESAPEKVEAKEEVSTEEAKETTEIESAAIAAPVEEVTTTEA*KV 504



 Score = 28.1 bits (61), Expect = 7.4
 Identities = 16/44 (36%), Positives = 22/44 (49%)
 Frame = +1

Query: 71  EPELEPYMPEPVQDSEEEEIPGKQEVLEAERRTVVVEAKPEANS 114
           +PE+E   PE V+  EE      +E  E E     VEAK E ++
Sbjct: 286 KPEVENPEPEKVEVKEEVSAEEAKETTETESAPEKVEAKEEVST 417


>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
           (1%)
          Length = 726

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
 Frame = +2

Query: 3   PEFDGR----EAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWWFCWRR------ 52
           P+F G+    E   WL  +E+  + K V+EE+K       L   A +WW   +R      
Sbjct: 347 PDF*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNLKRKRNCEG 526

Query: 53  RNQKATWWEFVEALLRKF 70
           +++  TW +  + L RK+
Sbjct: 527 KSKIKTWDKMRQKLTRKY 580


>TC87342 PIR|S41431|S41431 GTP-binding protein  ras-like - fava bean,
           complete
          Length = 995

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 125 YSPENSEMEASRKDSEFAMAAEQTAEVSRCQPVTVVDYIDCTLTAKGEKIDAEGEIK-IK 183
           Y  E S +EA+  ++ FA    Q   +   + V   +  + ++ AKGEKID + ++  +K
Sbjct: 525 YFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGAENGNASVPAKGEKIDLKNDVSALK 704

Query: 184 RL 185
           R+
Sbjct: 705 RV 710


>TC78742 similar to GP|3819164|emb|CAA09989.1 cytosolic chaperonin
           delta-subunit {Glycine max}, partial (38%)
          Length = 755

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 12/35 (34%), Positives = 21/35 (59%)
 Frame = +3

Query: 361 VVFPLSSHIHAFTRSRARLAQLDFSELGQSLTTRP 395
           V+ PL +HIH+F +SR  +    F  +  S+ ++P
Sbjct: 9   VLLPLITHIHSFPKSRVFIFTFLFVRVSHSILSQP 113


>BF636819 
          Length = 635

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 45  MWWFCWRRRNQKATWWEFVEALL 67
           +WWF WRR +Q  T  EF   LL
Sbjct: 409 VWWFWWRRCHQPVTR*EFQTKLL 341


>TC91012 similar to GP|13605698|gb|AAK32842.1 AT5g64940/MXK3_17 {Arabidopsis
           thaliana}, partial (8%)
          Length = 616

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 13/44 (29%), Positives = 20/44 (44%)
 Frame = -3

Query: 22  EAKGVSEEEKFSGAEKALTGEAFMWWFCWRRRNQKATWWEFVEA 65
           E + +   EK     + + GE    W  WRR    A  W+F+E+
Sbjct: 200 EKREMERVEKEKRLRRVICGERKWSWDSWRREEVVAINWKFLES 69


>TC89831 similar to PIR|H96569|H96569 unknown protein  54928-56750
           [imported] - Arabidopsis thaliana, partial (39%)
          Length = 897

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 231 SCLCTAVTANRLPDTFFCWTEVFIQ 255
           S LCTA+T+N   DTF   T  F++
Sbjct: 317 SLLCTAITSNSSVDTFVATTARFVK 243


>TC79241 similar to GP|21740501|emb|CAD40825. OSJNBa0006B20.16 {Oryza
           sativa}, partial (77%)
          Length = 1285

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 70  FEPELEPYMPEPVQDSEEEEIPGKQEVLEAE 100
           FEP LEP + + + + EE E+  +++V + E
Sbjct: 303 FEPFLEPTIAQEISEDEEVEVEEEEDVDDVE 395


>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
           1 {Arabidopsis thaliana}, partial (37%)
          Length = 1760

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 26/82 (31%), Positives = 44/82 (52%), Gaps = 13/82 (15%)
 Frame = -2

Query: 354 FRRRWLGVVFPL--SSHIHAFTRSRA------RLAQLDFSEL-----GQSLTTRPKPIML 400
           FRRR+L + FPL  SS ++ F  SRA      RL +L++ +L     GQ +  R   I++
Sbjct: 958 FRRRFLDI*FPLLYSSFLNLFISSRAQLQLFIRLFKLNYIKLETYISGQLVVYR---IVI 788

Query: 401 NRRNGPKRNFSFSIIYRPVHSL 422
           + R+ P     ++I +R +  +
Sbjct: 787 SGRSIPTFTPVYAIKFRSIKQI 722


>AW697235 
          Length = 846

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 231 SCLCTAVTANRLPDTFFCWTEVFIQ 255
           S LCTA+T+N   DTF   T  F++
Sbjct: 286 SLLCTAITSNSSVDTFVATTARFVK 212


>TC87303 homologue to GP|4586449|dbj|BAA76393.1 cytochrome c oxidase subunit
           6b-1 {Oryza sativa (japonica cultivar-group)}, partial
           (48%)
          Length = 905

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 63  VEALLRKFEPELEPYMPEPVQDSEEEEIPGKQEVLEAERRTVVVEAKPEANSVLLAKSEI 122
           VEA++ K   E  P  P   ++S E   P  +E  + E    VVE           K EI
Sbjct: 250 VEAVVEKTVEETIPAAPVVAEESSEVTPPAAEENAQEESSETVVEENSGDQEEAEEKPEI 429

Query: 123 K 123
           K
Sbjct: 430 K 432


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,441,964
Number of Sequences: 36976
Number of extensions: 240715
Number of successful extensions: 1522
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of query: 458
length of database: 9,014,727
effective HSP length: 99
effective length of query: 359
effective length of database: 5,354,103
effective search space: 1922122977
effective search space used: 1922122977
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)