TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0115.1
         (204 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (...    66  8e-12
TC84822 similar to GP|21554249|gb|AAM63324.1 unknown {Arabidopsi...    56  8e-09
TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18...    35  0.020
BQ750925 weakly similar to GP|3859711|emb| CBS domain protein {C...    30  0.49
TC87620 similar to GP|22138098|gb|AAM93429.1 ACR4 {Arabidopsis t...    28  1.9
BF004803 weakly similar to GP|21902013|dbj putative serine threo...    27  5.4
BG648474 similar to PIR|D86271|D862 protein F16A14.2 [imported] ...    27  7.0

>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
           cultivar-group)}, partial (13%)
          Length = 769

 Score = 66.2 bits (160), Expect = 8e-12
 Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +2

Query: 60  RRKIREDTAPRS-RKYLGRDHTAANQRLIGDYFANEPTYDDAMFRRRYRMQKHLFLRIVD 118
           + +    + PRS R+ + R+     +RL  DYF+  P Y D  FRRRYRM KH+FLRIV+
Sbjct: 440 QEEFASSSRPRSQRRNIERNREEGYKRLFNDYFSEAPVYMDE*FRRRYRMHKHVFLRIVE 619

Query: 119 DLSSSDNYFTQRVDA 133
            L   D YF   VDA
Sbjct: 620 ALGQHDEYFQLTVDA 664


>TC84822 similar to GP|21554249|gb|AAM63324.1 unknown {Arabidopsis
           thaliana}, partial (47%)
          Length = 636

 Score = 56.2 bits (134), Expect = 8e-09
 Identities = 35/100 (35%), Positives = 53/100 (53%)
 Frame = +1

Query: 29  MDPSECPFDLAAYIQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIG 88
           MDPS+  FD+ AY + S+IEE Y+LNRFRERR++I E   PR       + +   +R +G
Sbjct: 40  MDPSKFRFDIEAYKRKSEIEERYILNRFRERRKQIEEGYTPRR-----EEESVGRKRKMG 204

Query: 89  DYFANEPTYDDAMFRRRYRMQKHLFLRIVDDLSSSDNYFT 128
           +    E T D      + +   H+      DL +  N+F+
Sbjct: 205 E--RKETTTDPKWPSIKPKNNLHITRLRDFDLFTVQNFFS 318


>TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
           {Arabidopsis thaliana}, partial (23%)
          Length = 773

 Score = 35.0 bits (79), Expect = 0.020
 Identities = 26/103 (25%), Positives = 43/103 (41%)
 Frame = +2

Query: 93  NEPTYDDAMFRRRYRMQKHLFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRML 152
           N   + D  FRR +RM K  F  I ++L SS      + +   +  I    +    +  L
Sbjct: 431 NREDFPDDEFRRCFRMSKQTFNMICNELDSS----VTKKNTTLRDAIPVRQRVAVCIYRL 598

Query: 153 AYGVAADAVDEYIKIGGTTALECLRRFCKGIIQLYEQQYLRAP 195
           A G     V +   +G +T  + +   C  I  +  Q++LR P
Sbjct: 599 ATGEPLRLVSKKFGLGISTCHKLVLEVCAAIKSVLMQKFLRWP 727


>BQ750925 weakly similar to GP|3859711|emb| CBS domain protein {Candida
           albicans}, partial (3%)
          Length = 659

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 17/35 (48%), Positives = 20/35 (56%)
 Frame = -3

Query: 53  LNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLI 87
           L R R RRR +R  T+PR R   GRD  AA  R +
Sbjct: 645 LRRTRIRRRLLRYLTSPRKRATSGRDGVAAAVRAV 541


>TC87620 similar to GP|22138098|gb|AAM93429.1 ACR4 {Arabidopsis thaliana},
           partial (91%)
          Length = 1508

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 115 RIVDDLSSSDNYFTQRVDAANKQGI 139
           R+V D  +S N    RVD+ANKQGI
Sbjct: 44  RVVIDNGASQNATVIRVDSANKQGI 118


>BF004803 weakly similar to GP|21902013|dbj putative serine threonine kinase
           {Oryza sativa (japonica cultivar-group)}, partial (6%)
          Length = 387

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 23/89 (25%), Positives = 37/89 (40%)
 Frame = +2

Query: 39  AAYIQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYD 98
           A  + +  +EEA ++N   +R   +R+  A    KYL         +     FA E +Y+
Sbjct: 44  ALLLSSESLEEAKIINASLKREETLRKIAAEEKAKYLKVMKELEESK---SMFAKE-SYE 211

Query: 99  DAMFRRRYRMQKHLFLRIVDDLSSSDNYF 127
             M       +     RIVD L S+D  +
Sbjct: 212 RQMAELNVLRESIEKQRIVDTLLSNDRRY 298


>BG648474 similar to PIR|D86271|D862 protein F16A14.2 [imported] -
           Arabidopsis thaliana, partial (4%)
          Length = 791

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = +3

Query: 61  RKIREDTAPRSRKYLGRDHTAANQRLI 87
           + I  D  P+SRKY G++H    + LI
Sbjct: 345 KNIVTDFNPKSRKYYGKNHKQIKEELI 425


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,277
Number of Sequences: 36976
Number of extensions: 61375
Number of successful extensions: 353
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of query: 204
length of database: 9,014,727
effective HSP length: 92
effective length of query: 112
effective length of database: 5,612,935
effective search space: 628648720
effective search space used: 628648720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)