BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.9
(1105 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI974280 weakly similar to GP|20279447|g putative TNP2-like tran... 140 4e-33
BF650639 weakly similar to GP|22748425|g putative transposon pro... 130 4e-30
BG452205 weakly similar to GP|1345502|emb TNP2 {Antirrhinum maju... 125 7e-29
AW257182 weakly similar to GP|20279447|g putative TNP2-like tran... 112 1e-24
TC82803 similar to PIR|D85049|D85049 probable transposon protein... 60 2e-11
TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP... 68 2e-11
BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassic... 65 1e-10
BF631908 weakly similar to GP|21450441|gb| putative transposon p... 41 0.002
TC82397 similar to GP|18377877|gb|AAL67124.1 AT3g53630/F4P12_330... 32 1.0
BQ752123 30 5.2
BF635476 30 5.2
TC79084 similar to GP|3818579|gb|AAC69570.1| cytidine deaminase ... 30 6.7
>AI974280 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (8%)
Length = 457
Score = 140 bits (352), Expect = 4e-33
Identities = 72/139 (51%), Positives = 91/139 (64%)
Frame = +1
Query: 367 LTIMIPGPSAPKKSIDVYLRPLIDELKMLWEDGVMTYDVSLKQNFLMKAAVMWTINDFPA 426
L+++IPGPS+PK++IDVYL PLIDELK LWE G YD S KQ F AA++WTI+D PA
Sbjct: 16 LSLLIPGPSSPKRNIDVYLEPLIDELKELWERGFEVYDASSKQLFEAHAALLWTISDLPA 195
Query: 427 YGMLSGWMTMGKLACPVCMERSKAFSLAYSRKVSWFDCHRQFLSEDHEYRKCPKKFTKGK 486
Y MLSGW T GKLACPVC + + L +SRK + HR+FL H +RK K F GK
Sbjct: 196 YTMLSGWSTSGKLACPVCSYDTCSMYLKHSRKTCYMS-HRRFLDPKHRWRKDKKGF-DGK 369
Query: 487 GETSTKPRRLNGEEVWERI 505
E P L+G + ++
Sbjct: 370 KEIRVAPFPLSGSAILRKL 426
>BF650639 weakly similar to GP|22748425|g putative transposon protein {Oryza
sativa (japonica cultivar-group)}, partial (6%)
Length = 568
Score = 130 bits (326), Expect = 4e-30
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Frame = +2
Query: 218 KIDCCPGGCMLYYKEDEMLQSC---------SPEKRYKEVRKQGKEKFVPQQKMWYFPLV 268
KID C CMLY+K+ + SC ++ + KE V + + +FPL+
Sbjct: 71 KIDACXNDCMLYWKDHKNDISCHVCGASRXIESTTEXGQIEENKKEHKVSTKILRHFPLI 250
Query: 269 PRLQRLYSSMQTASHMRWHHEHYKEPDFLSHPSDAEAWMKFDEAWGTFADEPRNVRLGLC 328
P LQR + +TA+ +RWHH+ + L HP+D +AW F+ FA + RN+ LGL
Sbjct: 251 PXLQRXFMCSETATSLRWHHDDXSKDGKLRHPADGQAWKDFNGHHPEFARDSRNIXLGLA 430
Query: 329 SDGFAPFDISGKKYSCWPVIVTPYNLPPWMCMRREF 364
SDGF PF KYS WP I+ PYN PPW+CM+ +
Sbjct: 431 SDGFNPFRAMNLKYSAWPXILIPYNFPPWLCMKAXY 538
>BG452205 weakly similar to GP|1345502|emb TNP2 {Antirrhinum majus}, partial
(16%)
Length = 619
Score = 125 bits (315), Expect = 7e-29
Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 9/165 (5%)
Frame = +1
Query: 198 MPKNLYHAKKTVAELGLACVKIDCCPGGCMLYYKEDEMLQSC---------SPEKRYKEV 248
+P + + + +LGL KID CP CMLY+K+ + SC ++
Sbjct: 121 VPDSYNKTR*MIRDLGLDYSKIDACPNDCMLYWKDHKNDISCHVCGASRWIESTTESGQI 300
Query: 249 RKQGKEKFVPQQKMWYFPLVPRLQRLYSSMQTASHMRWHHEHYKEPDFLSHPSDAEAWMK 308
+ KE V + + +FPL+PRLQRL+ +TA+ +RWHH+ + L HP+D +AW
Sbjct: 301 EENKKEHKVSTKILRHFPLIPRLQRLFMCSETATSLRWHHDDCSKDGKLRHPADGQAWKD 480
Query: 309 FDEAWGTFADEPRNVRLGLCSDGFAPFDISGKKYSCWPVIVTPYN 353
F+ FA + RN+RLGL SDGF PF KY WPV + PYN
Sbjct: 481 FNGHHPEFARDSRNIRLGLASDGFNPFRAMNLKYXAWPVXLIPYN 615
>AW257182 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (6%)
Length = 387
Score = 112 bits (279), Expect = 1e-24
Identities = 54/98 (55%), Positives = 67/98 (68%)
Frame = +1
Query: 389 IDELKMLWEDGVMTYDVSLKQNFLMKAAVMWTINDFPAYGMLSGWMTMGKLACPVCMERS 448
I+ELK+LWE GV TYD S Q F M+AA++WTI+DFPAY MLSGW T GKLACP C +
Sbjct: 7 IEELKVLWESGVETYDASKNQMFRMRAALLWTISDFPAYAMLSGWSTKGKLACPCCNNNT 186
Query: 449 KAFSLAYSRKVSWFDCHRQFLSEDHEYRKCPKKFTKGK 486
+ L +SRK+ + D HR FL DH +R+ K F K
Sbjct: 187 SSTYLKHSRKMCYMD-HRTFLPMDHAWRENRKSFNGKK 297
>TC82803 similar to PIR|D85049|D85049 probable transposon protein [imported]
- Arabidopsis thaliana, partial (5%)
Length = 755
Score = 60.1 bits (144), Expect(2) = 2e-11
Identities = 31/52 (59%), Positives = 37/52 (70%), Gaps = 7/52 (13%)
Frame = +1
Query: 682 FFHF-------LNRFIRTLKQKVTNKAHVEGSICKAYLLEEMSTFASYYYPP 726
F HF + RFIRT KQ VTN+A+VEGSI K Y+LE +ST ASYY+PP
Sbjct: 427 FLHFSKLNLDLVYRFIRTSKQNVTNQAYVEGSIWKDYILEVVSTLASYYHPP 582
Score = 46.6 bits (109), Expect = 5e-05
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Frame = +3
Query: 704 EGSICKAYLLEEMSTFASYYYP-----PDVPSRRTRVPRND--GECSSQNPPLSIFNHAG 756
+ +C + LE + T Y PD+PSRRTRVP ND GE NP LSIFN+ G
Sbjct: 498 KSGLCGRFDLERLYTRGGVYISFLLSSPDIPSRRTRVPHNDDGGEDFLVNPTLSIFNYLG 677
Score = 28.1 bits (61), Expect(2) = 2e-11
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +2
Query: 632 *LNGTPPNSFTV*SKSRRSCPL*MDVSV*EVS 663
*LNGT SF++*SKS +S +*M+VS+ +V+
Sbjct: 290 *LNGTSFYSFSL*SKSWQSRTI*MNVSIRKVN 385
>TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP2-like
transposon protein {Oryza sativa (japonica
cultivar-group)}, partial (10%)
Length = 2433
Score = 67.8 bits (164), Expect = 2e-11
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = +1
Query: 536 ELPYWKTLLLPHNIDVMHTERNVFLNILFTVMDTKGKTKDTFKSRKDLEEYCLRGGLEVQ 595
ELPYW + L HN+DVMH E+N+F NI+ T++D GKTKD + R DLEE +R L +
Sbjct: 1 ELPYWASNTLHHNLDVMHIEKNIFDNIIGTLLDIPGKTKDHVRGRYDLEEMGIRKNLHPR 180
Query: 596 QSENG 600
G
Sbjct: 181 DVGGG 195
Score = 49.7 bits (117), Expect = 6e-06
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Frame = +1
Query: 666 IHLISLKFINSFPLRSFFHFLNRFIRTLKQKVTNKAHVEGSICKAYLLEEMSTFASYYYP 725
I + L ++ F R + + + R++ LK V N++ EGSI + Y+ EE T S Y
Sbjct: 589 IFRMRLDWVAQFNFR-WMYPVERYLCKLKGYVRNRSRPEGSIAEGYVAEEGITICSRYMH 765
Query: 726 PDVPSRRTRVPRN-DGECSSQNPPLSIFNHAGRGYGKCITTT---LDGMEVKSAHLYILL 781
V +R R +N D + + F+ GR G LD + AH Y+L
Sbjct: 766 KGVDTRSNRKNQNYDDSDLLEVDEIDYFSSIGRPLGGKKNGKPFYLDFDSLAQAHRYLLF 945
Query: 782 NCPEVTPYIK 791
NC E+ YI+
Sbjct: 946 NCGEIEVYIR 975
>BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassica rapa},
partial (11%)
Length = 267
Score = 65.1 bits (157), Expect = 1e-10
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +3
Query: 540 WKTLLLPHNIDVMHTERNVFLNILFTVMDTKGKTKDTFKSRKDLEEYCLRGGLEVQQSEN 599
W+ LL HN+DVMH E+N F N++ T+++ +GKTKD KSR DL + C R L V ++
Sbjct: 3 WEDHLLRHNLDVMHIEKNFFDNLMNTILNVQGKTKDNLKSRLDLVDICARSELHVDENGR 182
Query: 600 GNF 602
F
Sbjct: 183 APF 191
>BF631908 weakly similar to GP|21450441|gb| putative transposon protein
5'-partial {Oryza sativa (japonica cultivar-group)},
partial (17%)
Length = 681
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +3
Query: 686 LNRFIRTLKQKVTNKAHVEGSICKAYLLEEMSTFASYYYPPDVPSRRTRVPRN 738
+ RFI TLK V N+ + EGSI + Y+ E T S Y V ++ + PRN
Sbjct: 480 IERFILTLKNYVRNRNYPEGSIAEGYVANECLTHCSRYMSDGVQTKFNKPPRN 638
>TC82397 similar to GP|18377877|gb|AAL67124.1 AT3g53630/F4P12_330
{Arabidopsis thaliana}, partial (9%)
Length = 716
Score = 32.3 bits (72), Expect = 1.0
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +3
Query: 466 RQFLSEDHEYRKCPKKFTKGKGETSTKPRRLNGEEVW 502
R+FL E E+++ +F+ GKGE R L E +W
Sbjct: 555 REFLKEKEEWKRKEFEFSSGKGECCCGERELELEAIW 665
>BQ752123
Length = 730
Score = 30.0 bits (66), Expect = 5.2
Identities = 16/43 (37%), Positives = 22/43 (50%)
Frame = +2
Query: 518 PSQGYGVKHHWTSRSIFWELPYWKTLLLPHNIDVMHTERNVFL 560
PS +HH S FW L Y+ TL +P I +H E +F+
Sbjct: 44 PSPLCDTQHHAVFFSYFWSL-YYTTLPIPITIITIHNEPRLFI 169
>BF635476
Length = 676
Score = 30.0 bits (66), Expect = 5.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 887 CF*RVWHGALLEMSTNGIVMLLMDTSLLQKHKIK 920
C *R+WH ++LE +TN I L SLL + + K
Sbjct: 280 C**RIWHSSVLEGATNVISQLSGSISLLSRTREK 179
>TC79084 similar to GP|3818579|gb|AAC69570.1| cytidine deaminase 4
{Arabidopsis thaliana}, partial (27%)
Length = 769
Score = 29.6 bits (65), Expect = 6.7
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = -2
Query: 950 LLSWSTLVVLQRSWFYLSVIG 970
LLSW+ ++VL R+W Y ++G
Sbjct: 531 LLSWTIMIVLTRTWIYHPLVG 469
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.348 0.152 0.547
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,399,339
Number of Sequences: 36976
Number of extensions: 675726
Number of successful extensions: 6310
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 3622
Number of HSP's gapped (non-prelim): 3168
length of query: 1105
length of database: 9,014,727
effective HSP length: 106
effective length of query: 999
effective length of database: 5,095,271
effective search space: 5090175729
effective search space used: 5090175729
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0112.9