TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0111b.9
         (341 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ141123 homologue to GP|14488272|db Na+/H+ exchanger protein {I...    28  5.1
AW691011 similar to PIR|T01804|T018 Na+/H+-exchanging protein 3 ...    28  5.1
TC87386 similar to GP|3717239|emb|CAA03732.1 unnamed protein pro...    28  6.7
TC84016 similar to GP|11994521|dbj|BAB02585. gene_id:MUO10.12~un...    28  6.7
TC87374 similar to PIR|T52310|T52310 Lil3 protein [imported] - A...    27  8.7
TC85671 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 ...    27  8.7

>BQ141123 homologue to GP|14488272|db Na+/H+ exchanger protein {Ipomoea nil},
           partial (18%)
          Length = 655

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 252 STWLVKVIRGFLRAQCQPLPLKLAL 276
           ++WL+K++  F   QC PLP+ L L
Sbjct: 307 TSWLLKLLLLFQNYQCYPLPIMLLL 381


>AW691011 similar to PIR|T01804|T018 Na+/H+-exchanging protein 3 homolog
           A_TM021B04.4 - Arabidopsis thaliana, partial (21%)
          Length = 654

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 252 STWLVKVIRGFLRAQCQPLPLKLAL 276
           ++WL+K++  F   QC PLP+ L L
Sbjct: 301 TSWLLKLLLLFQNYQCYPLPIMLLL 375


>TC87386 similar to GP|3717239|emb|CAA03732.1 unnamed protein product
            {Cyamopsis tetragonoloba}, partial (89%)
          Length = 1868

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 72   SWISWLASSQVGHVGSFEAAWWSWY 96
            SWI +     +G +GSF   WW+ Y
Sbjct: 1474 SWIWFNGKEYLGSLGSFRDLWWAEY 1548


>TC84016 similar to GP|11994521|dbj|BAB02585. gene_id:MUO10.12~unknown
           protein {Arabidopsis thaliana}, partial (14%)
          Length = 626

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 15/30 (49%)
 Frame = +2

Query: 74  ISWLASSQVGHVGSFEAAWWSWYPRCDTRE 103
           ISW  S++        A+WW    RCDT +
Sbjct: 284 ISWDGSTRSSSFEQCYASWWGCISRCDTSD 373


>TC87374 similar to PIR|T52310|T52310 Lil3 protein [imported] - Arabidopsis
           thaliana, partial (44%)
          Length = 1119

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 18/47 (38%), Positives = 24/47 (50%)
 Frame = -2

Query: 6   ISVSLWIKFLVV*PHGRVGF*TLQVEFSFLSLSLPPFQLILLRSFGY 52
           +S+S+W  F V+       F  L++ F  LSLSL  F LIL     Y
Sbjct: 155 VSISVWFVFSVLSFQFLFMFMFLELSFYPLSLSLSHFYLILWNGHKY 15


>TC85671 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1).
           [Apricot] {Prunus armeniaca}, complete
          Length = 1508

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 75  SWLASSQVGHVGSFEA-AWWSWYPRCD 100
           SW    Q G V SFEA  WW++   CD
Sbjct: 743 SWC*DHQCGKVESFEACTWWAFGEICD 823


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.358    0.162    0.621 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,808,456
Number of Sequences: 36976
Number of extensions: 242597
Number of successful extensions: 2782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 2123
length of query: 341
length of database: 9,014,727
effective HSP length: 97
effective length of query: 244
effective length of database: 5,428,055
effective search space: 1324445420
effective search space used: 1324445420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 59 (27.3 bits)